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DNA-binding pseudobarrel domain superfamily domain assignments
in
Prunus persica v139

Assignment details

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Prunus persica v139 has 143 significant domains in 114 proteins.

     

Sequence ID   Evalue   Region   Family  
ppa000479m|PACid:17643750   2.22e-43   125-265   B3 DNA binding domain  
ppa000708m|PACid:17643475   1.2e-43   116-255   B3 DNA binding domain  
ppa000946m|PACid:17668069   3.27e-47   134-276   B3 DNA binding domain  
ppa001069m|PACid:17643542   8.11e-49   117-261   B3 DNA binding domain  
ppa001179m|PACid:17657874   1.31e-48   112-256   B3 DNA binding domain  
ppa001220m|PACid:17643025   6.28e-20   324-426   B3 DNA binding domain  
ppa001229m|PACid:17658652   1.83e-20   329-432   B3 DNA binding domain  
ppa001234m|PACid:17668147   9.03e-19   323-425   B3 DNA binding domain  
ppa001392m|PACid:17656823   7.98e-40   157-289   B3 DNA binding domain  
ppa001557m|PACid:17651056   3.92e-44   159-278   B3 DNA binding domain  
ppa001608m|PACid:17655223   1.16e-22   646-742   B3 DNA binding domain  
ppa002065m|PACid:17664997   2.22e-42   140-254   B3 DNA binding domain  
ppa002082m|PACid:17645207   8.5e-29   105-217   B3 DNA binding domain  
ppa002195m|PACid:17653376   6.28e-29   117-224   B3 DNA binding domain  
ppa002230m|PACid:17646101   1.19e-40   116-256   B3 DNA binding domain  
ppa002394m|PACid:17640565   4.97e-43   116-256   B3 DNA binding domain  
ppa002617m|PACid:17661639   2.09e-40   104-245   B3 DNA binding domain  
ppa002710m|PACid:17657536   2.09e-29   95-204   B3 DNA binding domain  
ppa003136m|PACid:17643333   1.03e-28   125-240   B3 DNA binding domain  
ppa003393m|PACid:17664998   3.92e-41   1-110   B3 DNA binding domain  
ppa003541m|PACid:17642604   4.12e-23   228-327   B3 DNA binding domain  
  1.51e-22   449-549   B3 DNA binding domain  
  2.75e-22   11-110   B3 DNA binding domain  
ppa005086m|PACid:17643935   1.55e-24   221-322   B3 DNA binding domain  
  2.16e-20   15-114   B3 DNA binding domain  
  1.77e-19   386-476   B3 DNA binding domain  
ppa006243m|PACid:17664074   7.19e-29   217-335   B3 DNA binding domain  
ppa006275m|PACid:17645023   7.32e-24   297-396   B3 DNA binding domain  
  5.1e-23   6-99   B3 DNA binding domain  
ppa006901m|PACid:17645024   6.41e-24   268-367   B3 DNA binding domain  
  4.51e-23   6-99   B3 DNA binding domain  
ppa008558m|PACid:17648865   0.00000000000161   1-59   B3 DNA binding domain  
ppa009186m|PACid:17652651   1.29e-23   9-103   B3 DNA binding domain  
  1.73e-16   178-280   B3 DNA binding domain  
ppa009270m|PACid:17668988   1.96e-19   200-296   B3 DNA binding domain  
  0.00000000000000216   6-88   B3 DNA binding domain  
ppa009916m|PACid:17663281   6.28e-17   179-271   B3 DNA binding domain  
  0.00000000000151   2-72   B3 DNA binding domain  
ppa011554m|PACid:17655125   0.00000000000000294   90-187   B3 DNA binding domain  
ppa012926m|PACid:17659376   9.29e-17   29-122   B3 DNA binding domain  
ppa013132m|PACid:17653860   0.00000000000000942   1-76   B3 DNA binding domain  
ppa013141m|PACid:17652302   1.96e-20   21-120   B3 DNA binding domain  
ppa013235m|PACid:17656256   0.000000000049   52-119   B3 DNA binding domain  
ppa013524m|PACid:17648161   0.00000000569   7-104   B3 DNA binding domain  
ppa015021m|PACid:17653343   1.1e-23   37-136   B3 DNA binding domain  
ppa015343m|PACid:17659936   1.49e-20   1-84   B3 DNA binding domain  
  0.00000124   104-173   B3 DNA binding domain  
ppa015369m|PACid:17643384   1.06e-17   26-113   B3 DNA binding domain  
ppa015816m|PACid:17656975   6.28e-16   115-210   B3 DNA binding domain  
ppa015999m|PACid:17648747   8.76e-30   112-220   B3 DNA binding domain  
ppa016306m|PACid:17657757   0.00000000000049   5-116   B3 DNA binding domain  
ppa016432m|PACid:17660119   1.04e-18   1-78   B3 DNA binding domain  
  0.00000000116   128-199   B3 DNA binding domain  
ppa016980m|PACid:17645763   0.000000000196   5-92   B3 DNA binding domain  
ppa017007m|PACid:17648182   0.000000000000235   104-217   B3 DNA binding domain  
ppa017199m|PACid:17640784   0.000000000188   159-240   B3 DNA binding domain  
  0.0000000177   6-56   B3 DNA binding domain  
ppa017317m|PACid:17666663   2.55e-19   6-85   B3 DNA binding domain  
ppa017456m|PACid:17658576   9.02e-21   1-83   B3 DNA binding domain  
  0.0000000000000902   104-185   B3 DNA binding domain  
ppa017553m|PACid:17650985   0.00000000000102   86-197   B3 DNA binding domain  
ppa017776m|PACid:17645578   6.8e-19   123-229   B3 DNA binding domain  
ppa017836m|PACid:17649036   1.39e-17   15-106   B3 DNA binding domain  
  0.000000000961   145-212   B3 DNA binding domain  
  0.0000000163   216-252   B3 DNA binding domain  
ppa017988m|PACid:17655995   3.14e-16   21-109   B3 DNA binding domain  
ppa018223m|PACid:17647527   7.06e-20   125-221   B3 DNA binding domain  
ppa018424m|PACid:17661137   0.0000000000294   3-67   B3 DNA binding domain  
ppa018532m|PACid:17645457   0.000000863   76-173   B3 DNA binding domain  
ppa018806m|PACid:17655528   1.24e-21   11-109   B3 DNA binding domain  
  3.92e-20   260-356   B3 DNA binding domain  
ppa018953m|PACid:17657284   1.06e-18   10-107   B3 DNA binding domain  
ppa019027m|PACid:17643817   0.0000000196   4-89   B3 DNA binding domain  
ppa019123m|PACid:17641021   0.0000706   13-125   B3 DNA binding domain  
ppa019131m|PACid:17653345   2.49e-29   101-208   B3 DNA binding domain  
ppa019311m|PACid:17660636   0.00000000000106   212-321   B3 DNA binding domain  
ppa019336m|PACid:17651302   0.00000000137   228-354   B3 DNA binding domain  
ppa019539m|PACid:17669296   1.7e-32   104-209   B3 DNA binding domain  
ppa019889m|PACid:17643758   3.53e-22   88-183   B3 DNA binding domain  
  0.0053   2-41   B3 DNA binding domain  
ppa019927m|PACid:17653507   0.00000000114   8-100   B3 DNA binding domain  
ppa020108m|PACid:17667096   0.000000000602   181-309   B3 DNA binding domain  
ppa020124m|PACid:17661264   0.000000000000353   119-194   B3 DNA binding domain  
  0.00143   2-42   B3 DNA binding domain  
ppa020952m|PACid:17657758   0.000000000000981   32-125   B3 DNA binding domain  
ppa021307m|PACid:17642289   1.16e-19   117-216   B3 DNA binding domain  
ppa021314m|PACid:17665683   2.55e-21   10-107   B3 DNA binding domain  
  0.00000000000432   126-193   B3 DNA binding domain  
ppa021390m|PACid:17653342   1.2e-22   40-139   B3 DNA binding domain  
ppa021660m|PACid:17668146   1.04e-21   13-112   B3 DNA binding domain  
ppa021764m|PACid:17647040   4.51e-21   6-104   B3 DNA binding domain  
  0.0000161   191-236   B3 DNA binding domain  
ppa021765m|PACid:17658710   0.00000000000235   205-314   B3 DNA binding domain  
ppa021867m|PACid:17662107   1.84e-17   2-79   B3 DNA binding domain  
ppa021899m|PACid:17641674   6.93e-25   169-264   B3 DNA binding domain  
ppa022139m|PACid:17662741   0.0000114   6-67   B3 DNA binding domain  
ppa022219m|PACid:17669363   3.14e-17   16-115   B3 DNA binding domain  
  0.000000147   155-228   B3 DNA binding domain  
ppa022314m|PACid:17648788   4.58e-36   134-269   B3 DNA binding domain  
ppa022411m|PACid:17642992   0.0000000000000432   91-205   B3 DNA binding domain  
ppa022488m|PACid:17665886   0.00000000000216   187-262   B3 DNA binding domain  
ppa022948m|PACid:17640869   8.24e-22   17-113   B3 DNA binding domain  
  1e-19   433-526   B3 DNA binding domain  
  8.44e-16   230-330   B3 DNA binding domain  
ppa023063m|PACid:17659399   0.00000314   5-89   B3 DNA binding domain  
ppa023244m|PACid:17640411   0.000000000353   7-89   B3 DNA binding domain  
ppa023442m|PACid:17641068   0.000000902   115-216   B3 DNA binding domain  
ppa023470m|PACid:17641324   4.12e-19   27-114   B3 DNA binding domain  
ppa023805m|PACid:17653712   5.89e-21   16-114   B3 DNA binding domain  
  0.00000000000294   182-262   B3 DNA binding domain  
ppa023842m|PACid:17665296   5.3e-16   114-219   B3 DNA binding domain  
ppa024354m|PACid:17645681   3.4e-30   114-188   B3 DNA binding domain  
ppa024498m|PACid:17654615   0.0000000116   43-129   B3 DNA binding domain  
ppa024666m|PACid:17643874   0.0000000569   195-296   B3 DNA binding domain  
ppa025002m|PACid:17660307   3.14e-16   107-206   B3 DNA binding domain  
  0.0000000000000145   3-74   B3 DNA binding domain  
ppa025156m|PACid:17641022   1.37e-21   157-257   B3 DNA binding domain  
  0.0000000000000128   2-86   B3 DNA binding domain  
ppa025238m|PACid:17650946   0.00000000000235   126-239   B3 DNA binding domain  
ppa025386m|PACid:17664742   1.15e-16   30-123   B3 DNA binding domain  
ppa025633m|PACid:17643918   6.28e-21   271-370   B3 DNA binding domain  
  1.1e-19   10-108   B3 DNA binding domain  
ppa025646m|PACid:17654142   0.0000000000000432   22-79   B3 DNA binding domain  
ppa025897m|PACid:17649510   2.16e-21   25-124   B3 DNA binding domain  
  0.000000000143   408-490   B3 DNA binding domain  
ppa026046m|PACid:17668883   1.26e-31   149-255   B3 DNA binding domain  
ppa026423m|PACid:17656016   0.0000000451   252-348   B3 DNA binding domain  
ppa026462m|PACid:17663156   0.000000000000647   2-73   B3 DNA binding domain  
  0.00000000000157   188-264   B3 DNA binding domain  
ppa026651m|PACid:17653097   1.44e-28   172-268   B3 DNA binding domain  
ppa026741m|PACid:17659740   1.33e-20   70-169   B3 DNA binding domain  
ppa026804m|PACid:17645238   1.16e-20   14-113   B3 DNA binding domain  
  2.35e-20   274-371   B3 DNA binding domain  
ppa027216m|PACid:17641394   0.00000235   103-206   B3 DNA binding domain  
ppb011178m|PACid:17645075   0.000000000726   8-98   B3 DNA binding domain  
ppb012714m|PACid:17661667   5.3e-17   29-122   B3 DNA binding domain  
ppb013756m|PACid:17654083   0.0000000000000149   51-149   B3 DNA binding domain  
ppb014811m|PACid:17641007   0.0000000000765   5-94   B3 DNA binding domain  
ppb015558m|PACid:17657857   0.00000000112   200-300   B3 DNA binding domain  
ppb018283m|PACid:17665952   0.000000432   151-263   B3 DNA binding domain  
ppb019942m|PACid:17656263   0.00000000000051   70-131   B3 DNA binding domain  
ppb024283m|PACid:17666892   5.49e-23   107-207   B3 DNA binding domain  
  1.71e-20   262-361   B3 DNA binding domain  
ppb024440m|PACid:17642731   1.14e-24   123-219   B3 DNA binding domain  
ppb025337m|PACid:17644184   8.83e-23   10-107   B3 DNA binding domain  
 
Weak hits:
ppa026355m|PACid:17665452   0.0628   275-329   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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