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RUN domain-like superfamily domain assignments
in
Homo sapiens

Assignment details

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Homo sapiens (NCBI version) has 39 significant domains in 37 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|109240552|ref|NP_001035882.1|   2.62e-30   9-139   RUN domain  
gi|109240556|ref|NP_060457.4|   1.7e-48   44-208   RUN domain  
gi|116292170|ref|NP_115543.2|   4.97e-43   8-184   RUN domain  
gi|122891862|ref|NP_659410.3|   9.02e-39   734-809,840-928   RUN domain  
  1.2e-28   1091-1268   RUN domain  
gi|148612795|ref|NP_055668.2|   2.35e-33   8-96,123-200   RUN domain  
gi|148612829|ref|NP_001091979.1|   2.22e-33   8-96,123-200   RUN domain  
gi|148612840|ref|NP_001091967.1|   7.72e-36   8-199   RUN domain  
gi|148612875|ref|NP_001091968.1|   7.06e-36   8-199   RUN domain  
gi|150456467|ref|NP_055502.1|   4.18e-31   22-187   RUN domain  
gi|157412245|ref|NP_001098673.1|   0.0000000123   487-663   RUN domain  
gi|157412247|ref|NP_001098674.1|   0.0000107   487-619   RUN domain  
gi|157412249|ref|NP_001098675.1|   0.00000000405   76-253   RUN domain  
gi|157738667|ref|NP_078789.2|   2.35e-40   10-172   RUN domain  
gi|171543850|ref|NP_775102.2|   0.0000000314   529-601   RUN domain  
gi|195220720|ref|NP_001124181.1|   5.62e-54   126-291   RUN domain  
gi|197304744|ref|NP_001127877.1|   9.15e-46   31-193   RUN domain  
gi|197304746|ref|NP_001127878.1|   7.06e-46   31-193   RUN domain  
gi|19923090|ref|NP_612147.1|   2.88e-43   31-210   RUN domain  
gi|209862765|ref|NP_001129471.1|   0.0000000235   995-1169   RUN domain  
gi|221139728|ref|NP_055979.2|   6.67e-31   5-161   RUN domain  
gi|221307578|ref|NP_001138297.1|   4.58e-43   26-193   RUN domain  
gi|221307580|ref|NP_001138298.1|   3.92e-45   26-188   RUN domain  
gi|224548938|ref|NP_001139114.1|   6.8e-22   1-127   RUN domain  
gi|282165733|ref|NP_940885.2|   3.53e-44   9-170   RUN domain  
gi|29648315|ref|NP_056520.2|   0.000000000000759   563-595,632-717   RUN domain  
gi|40538728|ref|NP_055613.1|   4.32e-42   18-187   RUN domain  
gi|42476123|ref|NP_055143.2|   0.00000000301   17-194   RUN domain  
gi|44889475|ref|NP_056028.2|   8.76e-36   748-824,858-947   RUN domain  
  2.35e-26   1107-1280   RUN domain  
gi|55741719|ref|NP_055621.1|   0.0000000235   995-1169   RUN domain  
gi|5730015|ref|NP_006686.1|   3.66e-43   26-193   RUN domain  
gi|7662352|ref|NP_055776.1|   4.71e-54   66-231   RUN domain  
gi|82697315|ref|NP_001032519.1|   8.24e-54   66-231   RUN domain  
gi|90577164|ref|NP_597711.1|   7.59e-36   8-199   RUN domain  
gi|90577167|ref|NP_001035037.1|   8.37e-36   8-199   RUN domain  
gi|94721330|ref|NP_001035542.1|   5.23e-51   1-167   RUN domain  
gi|94721332|ref|NP_001035541.1|   5.23e-51   1-167   RUN domain  
gi|94721336|ref|NP_079434.3|   6.93e-51   109-275   RUN domain  
 
Weak hits:
gi|153792112|ref|NP_001093322.1|   0.0314   78-170   RUN domain  
gi|153945800|ref|NP_001093584.1|   0.0314   78-170   RUN domain  
gi|223029414|ref|NP_001138567.1|   0.0353   457-523   RUN domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   29812 29812
No Yes Homo sapiens 76_38 Human 82 77
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 23 21
No Yes Gorilla gorilla 76_3.1 Western gorilla 30 28
No Yes Pongo abelii 76_2 Sumatran orangutan 23 20
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 22 19
No Yes Papio anubis 76 Olive baboon 22 20
No Yes Macaca mulatta 76_1 Rhesus monkey 27 24
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 46 43
No Yes Otolemur garnettii 76_3 Small-eared galago 21 19
No Yes Microcebus murinus 76_1 Gray mouse lemur 20 17
No Yes Rattus norvegicus 76_5.0 Norway rat 25 23
No Yes Mus musculus 76_38 House mouse 48 45
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 18 16
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 20 18
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 23 20
No Yes Cavia porcellus 76_3 Domestic guinea pig 19 18
No Yes Oryctolagus cuniculus 76_2 Rabbit 21 19
No Yes Ochotona princeps 76 American pika 19 17
No Yes Tupaia belangeri 76 Northern tree shrew 17 14
No Yes Sus scrofa 76_10.2 Pig 24 22
No Yes Bos taurus 76_3.1 Cattle 26 25
No Yes Ovis aries 76_3.1 Sheep 24 21
No Yes Vicugna pacos 76_1 Alpaca 12 10
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 21 19
No Yes Mustela putorius furo 76_1.0 Domestic ferret 19 17
No Yes Ailuropoda melanoleuca 76_1 Giant panda 21 19
No Yes Canis familiaris 76_3.1 Dog 34 30
No Yes Felis catus 76_6.2 Domestic cat 18 16
No Yes Equus caballus 76_2 Horse 24 22
No Yes Myotis lucifugus 76_2.0 Little brown bat 21 19
No Yes Pteropus vampyrus 76_1 Large flying fox 20 18
No Yes Sorex araneus 76_1 European shrew 13 13
No Yes Erinaceus europaeus 76 Western European hedgehog 13 12
No Yes Procavia capensis 76_1 Cape rock hyrax 20 18
No Yes Loxodonta africana 76_3 African savanna elephant 29 27
No Yes Echinops telfairi 76 Small Madagascar hedgehog 17 15
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 30 28
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 13 11
No Yes Macropus eugenii 76_1.0 Tammar wallaby 20 17
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 24 22
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 22 20
No Yes Ornithorhynchus anatinus 76_5 Platypus 25 24
No Yes Saccoglossus kowalevskii v3.0   21 18
No Yes Petromyzon marinus 76_7.0 Sea lamprey 14 13
No Yes Meleagris gallopavo 76_2 Turkey 19 17
No Yes Gallus gallus 76_4 Chicken 20 18
No Yes Anas platyrhynchos 76_1.0 Mallard 18 16
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 25 23
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 21 19
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 18 16
No Yes Anolis carolinensis 76_2.0 Green anole 21 20
No Yes Xenopus laevis African clawed frog 9 9
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 26 23
No Yes Latimeria chalumnae 76_1 Coelacanth 19 18
No Yes Lepisosteus oculatus 76 Spotted gar 26 24
No Yes Gadus morhua 76_1 Atlantic cod 24 21
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 28 27
No Yes Takifugu rubripes 76_4 Torafugu 72 65
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 30 26
No Yes Oryzias latipes 76_1 Japanese medaka 26 23
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 24 22
No Yes Poecilia formosa 76 Amazon molly 23 21
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 41 35
No Yes Astyanax mexicanus 76 Mexican tetra 22 20
No Yes Danio rerio 76_9 Zebrafish 41 37
No Yes Oikopleura dioica   7 6
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 17 17
No Yes Ciona intestinalis 76 Vase tunicate 9 9
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 15 14
No Yes Adineta vaga   31 29
No Yes Octopus bimaculoides 280   27 24
No Yes Crassostrea gigas 22 Pacific oyster 11 10
No Yes Lottia gigantea Owl limpet 13 12
No Yes Helobdella robusta   10 9
No Yes Capitella sp. I   15 14
No Yes Danaus plexippus OGS1.0 Monarch butterfly 9 8
No Yes Heliconius melpomene Postman butterfly 9 8
No Yes Bombyx mori Domestic silkworm 9 8
No Yes Nasonia vitripennis Jewel wasp 6 6
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 21 17
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 11 10
No Yes Linepithema humile v1.1 Argentine ant 10 9
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 10 9
No Yes Solenopsis invicta v.2.2.3 Red fire ant 6 6
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 11 10
No Yes Atta cephalotes v1.1   11 10
No Yes Camponotus floridanus v3.3 Florida carpenter ant 11 10
No Yes Lucilia cuprina Australian sheep blowfly 10 9
No Yes Drosophila grimshawi 1.3   10 9
No Yes Drosophila willistoni 1.3   10 9
No Yes Drosophila pseudoobscura 2.13   13 12
No Yes Drosophila persimilis 1.3   10 9
No Yes Drosophila suzukii   11 10
No Yes Drosophila yakuba 1.3   10 9
No Yes Drosophila simulans 1.3   9 8
No Yes Drosophila sechellia 1.3   9 8
No Yes Drosophila melanogaster 76_5 Fruit fly 15 13
No Yes Drosophila erecta 1.3   10 9
No Yes Drosophila ananassae 1.3   11 10
No Yes Drosophila virilis 1.2   10 9
No Yes Drosophila mojavensis 1.3   10 9
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 8 7
No Yes Culex pipiens quinquefasciatus Southern house mosquito 8 7
No Yes Anopheles darlingi 22 American malaria mosquito 6 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 7 6
No Yes Tribolium castaneum 3.0 Red flour beetle 10 9
No Yes Pediculus humanus corporis (Early assembly) Human body louse 12 11
No Yes Acyrthosiphon pisum Pea aphid 5 5
No Yes Rhodnius prolixus 22   11 10
No Yes Daphnia pulex Common water flea 9 8
No Yes Strigamia maritima 22   12 11
No Yes Sarcoptes scabiei   7 6
No Yes Tetranychus urticae Two-spotted spider mite 5 4
No Yes Ixodes scapularis (Preliminary) Black-legged tick 7 7
No Yes Pristionchus pacificus   5 4
No Yes Meloidogyne incognita Southern root-knot nematode 8 7
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   8 7
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 14 13
No Yes Caenorhabditis japonica   5 4
No Yes Caenorhabditis brenneri   7 7
No Yes Caenorhabditis remanei   8 7
No Yes Caenorhabditis elegans 76_235 Roundworm 8 7
No Yes Caenorhabditis briggsae 2   7 6
No Yes Trichinella spiralis 22   6 6
No Yes Hymenolepis microstoma   9 8
No Yes Echinococcus multilocularis   9 8
No Yes Echinococcus granulosus   8 7
No Yes Taenia solium Pork tapeworm 9 8
No Yes Schistosoma mansoni   13 10
No Yes Mnemiopsis leidyi Sea walnut 9 8
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   10 10
No Yes Nematostella vectensis 1.0 Starlet sea anemone 13 12
No Yes Hydra vulgaris   10 10
No Yes Amphimedon queenslandica   11 10
No Yes Trichoplax adhaerens   9 9
No Yes Proterospongia sp. ATCC 50818   10 9
No Yes Monosiga brevicollis   7 7
No Yes Sphaeroforma arctica JP610   5 5
No Yes Capsaspora owczarzaki ATCC 30864   12 11
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Dictyostelium discoideum   4 4
No Yes Dictyostelium purpureum   4 4
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 1
No Yes Micromonas sp. RCC299   1 1
No Yes Thecamonas trahens ATCC 50062   11 11
No Yes Bigelowiella natans CCMP2755 22   4 4
No Yes Cyanophora paradoxa   4 4
No Yes Ectocarpus siliculosus   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   2 2
No Yes Pythium iwayamai DAOM BR242034 22   5 5
No Yes Pythium arrhenomanes ATCC 12531 22   4 4
No Yes Pythium ultimum v1.7-2   4 4
No Yes Pythium aphanidermatum DAOM BR444 22   4 4
No Yes Pythium irregulare DAOM BR486 22   4 4
No Yes Pythium vexans DAOM BR484 22   4 4
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phytophthora sojae 1.1   3 3
No Yes Phytophthora infestans T30-4   3 3
No Yes Phytophthora capsici   3 3
No Yes Hyaloperonospora arabidopsidis 22   2 2
No Yes Paramecium tetraurelia   1 1
No Yes Symbiodinium minutum clade B1 v1.2   1 1
No Yes Naegleria gruberi   4 4
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   4 4
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 34 30
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 14 12
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 9 8
No Yes Ascaris suum Victoria/Ghent Pig roundworm 6 6
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 7 6
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 85 79
No Yes Homo sapiens (NCBI version) Human 39 37
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 21 19
No Yes Heliconius numata (Incomplete)   3 3
No Yes Loa loa v3.3 (Request) Eye worm 10 7
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 9 8
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 8 7
No Yes Homo sapiens 69_37 Human 23 21
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 22 20
No Yes Gorilla gorilla 69_3.1 Western gorilla 23 21
No Yes Pongo abelii 69_2 Sumatran orangutan 20 18
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 19 17
No Yes Macaca mulatta 69_1 Rhesus monkey 18 16
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 21 19
No Yes Otolemur garnettii 69_3 Small-eared galago 20 18
No Yes Microcebus murinus 69_1 Gray mouse lemur 20 17
No Yes Rattus norvegicus 69_3.4 Norway rat 18 17
No Yes Mus musculus 69_38 House mouse 21 19
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 18 16
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 19 17
No Yes Cavia porcellus 69_3 Domestic guinea pig 19 18
No Yes Oryctolagus cuniculus 69_2 Rabbit 21 19
No Yes Ochotona princeps 69 American pika 19 17
No Yes Tupaia belangeri 69 Northern tree shrew 17 14
No Yes Sus scrofa 69_10.2 Pig 20 18
No Yes Bos taurus 69_3.1 Cattle 20 19
No Yes Vicugna pacos 69_1 Alpaca 12 10
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 21 19
No Yes Mustela putorius furo 69_1.0 Domestic ferret 19 17
No Yes Ailuropoda melanoleuca 69_1 Giant panda 21 19
No Yes Canis familiaris 69_3.1 Dog 21 19
No Yes Felis catus 69 Domestic cat 16 14
No Yes Equus caballus 69_2 Horse 21 19
No Yes Myotis lucifugus 69_2.0 Little brown bat 21 19
No Yes Pteropus vampyrus 69_1 Large flying fox 20 18
No Yes Sorex araneus 69_1 European shrew 13 13
No Yes Erinaceus europaeus 69 Western European hedgehog 13 12
No Yes Procavia capensis 69_1 Cape rock hyrax 20 18
No Yes Loxodonta africana 69_3 African savanna elephant 21 19
No Yes Echinops telfairi 69 Small Madagascar hedgehog 17 15
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 17 15
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 13 11
No Yes Macropus eugenii 69_1.0 Tammar wallaby 20 17
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 20 18
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 19 17
No Yes Ornithorhynchus anatinus 69_5 Platypus 21 20
No Yes Petromyzon marinus 69_7.0 Sea lamprey 8 7
No Yes Meleagris gallopavo 69_2 Turkey 17 15
No Yes Gallus gallus 69_2 Chicken 18 16
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 23 21
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 17 15
No Yes Anolis carolinensis 69_2.0 Green anole 19 18
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 18 16
No Yes Latimeria chalumnae 69_1 Coelacanth 17 16
No Yes Gadus morhua 69_1 Atlantic cod 24 21
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 22 21
No Yes Takifugu rubripes 69_4 Torafugu 26 23
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 23 20
No Yes Oryzias latipes 69_1 Japanese medaka 21 18
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 24 22
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 25 22
No Yes Danio rerio 69_9 Zebrafish 25 23
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 7 7
No Yes Ciona intestinalis 69 Vase tunicate 9 9
No Yes Drosophila melanogaster 69_5 Fruit fly 10 9
No Yes Caenorhabditis elegans 69_215 Roundworm 7 6
No Yes NCBI 2017_08 genome   15193 13864
No Yes STRING v9.0.5 (STRING)   759 692
No Yes Uniprot 2018_03 genome   8028 7280
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   8 8
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   12 12
No Yes TargetDB (Targets)   22 20

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