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Typo IV secretion system protein TraC superfamily domain assignments
in
all eukaryotic genomes

Assignment details

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5 selected genomes have 6 significant domains in 6 proteins.


Mus musculus 76_38 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000122374   0.0000955   10-145   Typo IV secretion system protein TraC  
 
Weak hits:
ENSMUSP00000079395   0.0471   449-496   Typo IV secretion system protein TraC  
ENSMUSP00000114773   0.000497   236-376   Typo IV secretion system protein TraC  
ENSMUSP00000117395   0.00131   876-1016   Typo IV secretion system protein TraC  
ENSMUSP00000119966   0.00183   369-441   Typo IV secretion system protein TraC  
ENSMUSP00000120092   0.000445   193-333   Typo IV secretion system protein TraC  
ENSMUSP00000138195   0.00549   27-113   Typo IV secretion system protein TraC  
ENSMUSP00000138886   0.00628   3-66   Typo IV secretion system protein TraC  

Drosophila ananassae 1.3 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
FBpp0124008   0.00000327   168-328   Typo IV secretion system protein TraC  
FBpp0126835   0.0000288   22-201   Typo IV secretion system protein TraC  
 
Weak hits:
FBpp0113504   0.0196   164-196   Typo IV secretion system protein TraC  
  0.0929   14-77   Typo IV secretion system protein TraC  
FBpp0124136   0.0732   243-347   Typo IV secretion system protein TraC  

Dictyostelium purpureum has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Dicpu1|86618|fgeneshDP_pm.C_scaffold_41000001   0.0000115   679-813   Typo IV secretion system protein TraC  
 
Weak hits:
jgi|Dicpu1|148003|GID1.0038692   0.0497   665-741   Typo IV secretion system protein TraC  
jgi|Dicpu1|76704|fgeneshDP_pg.C_scaffold_53000015   0.0127   368-463   Typo IV secretion system protein TraC  
jgi|Dicpu1|80328|fgeneshDP_pg.C_scaffold_180000016   0.0405   31-93   Typo IV secretion system protein TraC  
jgi|Dicpu1|83207|fgeneshDP_pg.C_scaffold_354000015   0.0536   50-108   Typo IV secretion system protein TraC  

Medicago truncatula has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Medtr0787s0010.1   2.48e-36   578-753   Typo IV secretion system protein TraC  
 
Weak hits:
Medtr1g070205.1   0.0706   91-192   Typo IV secretion system protein TraC  
Medtr3g081500.1   0.0288   142-202   Typo IV secretion system protein TraC  

Trichomonas vaginalis has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
91012.m00065   0.0000615   28-159   Typo IV secretion system protein TraC  
 
Weak hits:
118294.m00003   0.0811   17-153   Typo IV secretion system protein TraC  
119047.m00002   0.0549   150-262   Typo IV secretion system protein TraC  
121544.m00002   0.0575   19-131   Typo IV secretion system protein TraC  
122523.m00003   0.0458   150-262   Typo IV secretion system protein TraC  
139299.m00006   0.0196   13-64   Typo IV secretion system protein TraC  
81240.m00002   0.0536   19-144   Typo IV secretion system protein TraC  
82140.m00127   0.0798   1016-1077   Typo IV secretion system protein TraC  
82637.m00003   0.0889   22-166   Typo IV secretion system protein TraC  
82900.m00006   0.0196   13-64   Typo IV secretion system protein TraC  
83472.m00507   0.0017   38-129   Typo IV secretion system protein TraC  
84007.m00178   0.00085   14-86   Typo IV secretion system protein TraC  
84488.m00156   0.0392   96-182   Typo IV secretion system protein TraC  
84843.m00285   0.0262   89-210   Typo IV secretion system protein TraC  
86797.m00062   0.0275   70-149   Typo IV secretion system protein TraC  
86997.m00179   0.00085   14-86   Typo IV secretion system protein TraC  
87368.m00002   0.051   147-284   Typo IV secretion system protein TraC  
88783.m00067   0.00209   42-133   Typo IV secretion system protein TraC  
89044.m00088   0.0262   21-127   Typo IV secretion system protein TraC  
89153.m00002   0.0693   151-263   Typo IV secretion system protein TraC  
89276.m00154   0.0418   19-64   Typo IV secretion system protein TraC  
89476.m00039   0.000837   14-86   Typo IV secretion system protein TraC  
89770.m00074   0.000915   14-86   Typo IV secretion system protein TraC  
91545.m00014   0.0458   19-64   Typo IV secretion system protein TraC  
92789.m00055   0.0235   103-223   Typo IV secretion system protein TraC  
93111.m00012   0.0549   21-64   Typo IV secretion system protein TraC  
93171.m00079   0.00706   28-136   Typo IV secretion system protein TraC  
93515.m00169   0.0615   17-100   Typo IV secretion system protein TraC  
93905.m00175   0.0301   82-209   Typo IV secretion system protein TraC  
95843.m00003   0.0353   150-278   Typo IV secretion system protein TraC  
96170.m00002   0.0445   150-266   Typo IV secretion system protein TraC  
96351.m00005   0.034   13-64   Typo IV secretion system protein TraC  

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View all assignments containing a Typo IV secretion system protein TraC domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   19867 19867
No Yes Mus musculus 76_38 House mouse 1 1
No Yes Drosophila ananassae 1.3   2 2
No Yes Dictyostelium purpureum   1 1
No Yes Medicago truncatula Barrel medic 1 1
No Yes Trichomonas vaginalis   1 1
No Yes Selenomonas sputigena ATCC 35185   1 1
No Yes Prosthecochloris aestuarii DSM 271   2 2
No Yes Zobellia galactanivorans   1 1
No Yes Sulfurospirillum deleyianum DSM 6946   1 1
No Yes Campylobacter hominis ATCC BAA-381   2 2
No Yes Campylobacter lari RM2100   1 1
No Yes Desulfovibrio salexigens DSM 2638   1 1
No Yes Geobacter sp. M21   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   1 1
No Yes Thiomonas arsenitoxydans   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Burkholderia phytofirmans PsJN   3 3
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   3 3
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus necator N-1   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia ambifaria AMMD   2 2
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   2 2
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Acidovorax sp. JS42   2 2
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Comamonas testosteroni CNB-2   1 1
No Yes Pusillimonas sp. T7-7   3 3
No Yes Advenella kashmirensis WT001   2 2
No Yes Taylorella equigenitalis MCE9   1 1
No Yes Bordetella petrii DSM 12804   1 1
No Yes Bordetella bronchiseptica RB50   1 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Achromobacter xylosoxidans   1 1
No Yes Nitrosomonas eutropha C91   3 3
No Yes Methylovorus glucosetrophus SIP3-4   1 1
No Yes Parvularcula bermudensis HTCC2503   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Phenylobacterium zucineum HLK1   2 2
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Sphingobium sp. SYK-6   1 1
No Yes Sphingobium japonicum UT26S   2 2
No Yes Sphingobium chlorophenolicum L-1   2 2
No Yes Sphingomonas sp. MM-1   2 2
No Yes Sphingomonas wittichii RW1   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Dinoroseobacter shibae DFL 12   2 2
No Yes Ruegeria sp. TM1040   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Gluconacetobacter xylinus NBRC 3288   1 1
No Yes Acidiphilium multivorum AIU301   3 3
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Polymorphum gilvum SL003B-26A1   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Ochrobactrum anthropi ATCC 49188   2 2
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella ovis ATCC 25840   1 1
No Yes Brucella abortus S19   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   2 2
No Yes Rhizobium etli CIAT 652   2 2
No Yes Rhizobium leguminosarum bv. viciae 3841   2 2
No Yes Agrobacterium tumefaciens str. C58   2 2
No Yes Agrobacterium radiobacter K84   3 3
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   3 3
No Yes Mesorhizobium sp. BNC1   2 2
No Yes Mesorhizobium opportunistum WSM2075   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   2 2
No Yes Oligotropha carboxidovorans OM4   2 2
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Bartonella tribocorum CIP 105476   6 6
No Yes Bartonella henselae str. Houston-1   2 2
No Yes Bartonella grahamii as4aup   6 6
No Yes Bartonella quintana str. Toulouse   2 2
No Yes Oceanimonas sp. GK1   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio harveyi ATCC BAA-1116   1 1
No Yes Vibrio furnissii NCTC 11218   1 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Alcanivorax borkumensis SK2   1 1
No Yes Halomonas elongata DSM 2581   1 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Xylella fastidiosa M23   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas albilineans GPE PC73   5 5
No Yes Halothiobacillus neapolitanus c2   1 1
No Yes Thioalkalivibrio sp. K90mix   1 1
No Yes Legionella longbeachae NSW150   1 1
No Yes Legionella pneumophila str. Corby   2 2
No Yes Proteus mirabilis HI4320   1 1
No Yes Edwardsiella tarda EIB202   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Yersinia pseudotuberculosis IP 31758   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Dickeya zeae Ech1591   1 1
No Yes Pectobacterium sp. SCC3193   1 1
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Erwinia tasmaniensis Et1/99   2 2
No Yes Cronobacter turicensis z3032   1 1
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   2 2
No Yes Enterobacteriaceae bacterium strain FGI 57   1 1
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Arcobacter butzleri 7h1h   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2544   1 1
No Yes Campylobacter jejuni subsp. jejuni ICDCCJ07001   1 1
No Yes Campylobacter jejuni subsp. jejuni S3   1 1
No Yes Campylobacter jejuni subsp. jejuni IA3902   1 1
No Yes Campylobacter jejuni subsp. jejuni 81-176   2 2
No Yes Campylobacter coli CVM N29710   1 1
No Yes Neisseria gonorrhoeae TCDC-NG08107   1 1
No Yes Burkholderia phenoliruptrix BR3459a   2 2
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia sp. YI23   2 2
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia J2315   2 2
No Yes Burkholderia multivorans ATCC 17616   2 2
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Taylorella equigenitalis ATCC 35865   1 1
No Yes Bordetella parapertussis Bpp5   3 3
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Nitrosomonas sp. AL212   2 2
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   3 3
No Yes Octadecabacter arcticus 238   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella abortus A13334   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Sinorhizobium fredii USDA 257   2 2
No Yes Sinorhizobium fredii HH103   3 3
No Yes Sinorhizobium meliloti GR4   2 2
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   2 2
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   2 2
No Yes Rhizobium etli bv. mimosae str. Mim1   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   2 2
No Yes Mesorhizobium australicum WSM2073   1 1
No Yes Oligotropha carboxidovorans OM5   2 2
No Yes Oligotropha carboxidovorans OM5   2 2
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bartonella australis Aust/NH1   3 3
No Yes Bartonella vinsonii subsp. berkhoffii str. Winnie   4 4
No Yes Bartonella quintana RM-11   2 2
No Yes Aggregatibacter actinomycetemcomitans ANH9381   2 2
No Yes Aggregatibacter actinomycetemcomitans D11S-1   2 2
No Yes Vibrio fischeri ES114   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Stenotrophomonas maltophilia D457   1 1
No Yes Xylella fastidiosa subsp. fastidiosa GB514   1 1
No Yes Xylella fastidiosa 9a5c   3 3
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   3 3
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   2 2
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Thioflavicoccus mobilis 8321   1 1
No Yes Legionella pneumophila str. Paris   1 1
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila LPE509   2 2
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila 2300/99 Alcoy   2 2
No Yes Rahnella aquatilis HX2   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Dickeya dadantii Ech586   2 2
No Yes Dickeya dadantii 3937   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Cronobacter sakazakii ATCC BAA-894   1 1
No Yes Shigella flexneri 2a str. 2457T   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli JJ1886   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli ED1a   1 1
No Yes Escherichia coli UMN026   2 2
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida DOT-T1E   1 1
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Acinetobacter baumannii ATCC 19606   1 1
No Yes Methylophaga sp. JAM7   2 2
No Yes Cycloclasticus zancles 7-ME   1 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   6 6
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   13 13
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   4 4
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 2
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Combined (meta-genome)   8 8
No Yes Crater Hills (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   4 4
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   2 2
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   13 13
No Yes Dump top (Dump top) (meta-genome)   15 15
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   6 6
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   3 3
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   3 3
No Yes NCBI 2017_08 genome   14975 14968
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes Protozoadb 2010_08 (Protozoadb)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   7 7
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   5 5
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   6 6
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   2 2
No Yes Sludge/US, Jazz Assembly (meta-genome)   3 3
No Yes Sludge/US, Phrap Assembly (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   176 176
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   3 3
No Yes Uniprot 2018_03 genome   3723 3716
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   4 4
No Yes Global Ocean Sampling Expedition (GOS)   14 14
No Yes NCBI plasmid sequences (Plasmids)   357 357
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   3 3
No Yes TargetDB (Targets)   5 5
No Yes The Salmonella enterica Pan-genome (meta-genome)   5 5

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