SUPERFAMILY 1.75 HMM library and genome assignments server

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NHL repeat superfamily domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   137529 137529
No Yes Homo sapiens 76_38 Human 40 39
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 13 12
No Yes Gorilla gorilla 76_3.1 Western gorilla 18 18
No Yes Pongo abelii 76_2 Sumatran orangutan 15 15
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 17 17
No Yes Papio anubis 76 Olive baboon 15 15
No Yes Macaca mulatta 76_1 Rhesus monkey 21 21
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 35 31
No Yes Otolemur garnettii 76_3 Small-eared galago 15 15
No Yes Microcebus murinus 76_1 Gray mouse lemur 9 9
No Yes Rattus norvegicus 76_5.0 Norway rat 14 14
No Yes Mus musculus 76_38 House mouse 33 30
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 10 10
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 13 13
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 12 12
No Yes Cavia porcellus 76_3 Domestic guinea pig 15 14
No Yes Oryctolagus cuniculus 76_2 Rabbit 17 17
No Yes Ochotona princeps 76 American pika 10 10
No Yes Tupaia belangeri 76 Northern tree shrew 6 6
No Yes Sus scrofa 76_10.2 Pig 15 14
No Yes Bos taurus 76_3.1 Cattle 16 16
No Yes Ovis aries 76_3.1 Sheep 14 14
No Yes Vicugna pacos 76_1 Alpaca 5 5
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 12 12
No Yes Mustela putorius furo 76_1.0 Domestic ferret 15 15
No Yes Ailuropoda melanoleuca 76_1 Giant panda 17 17
No Yes Canis familiaris 76_3.1 Dog 17 16
No Yes Felis catus 76_6.2 Domestic cat 18 17
No Yes Equus caballus 76_2 Horse 17 17
No Yes Myotis lucifugus 76_2.0 Little brown bat 12 12
No Yes Pteropus vampyrus 76_1 Large flying fox 12 12
No Yes Sorex araneus 76_1 European shrew 6 6
No Yes Erinaceus europaeus 76 Western European hedgehog 10 10
No Yes Procavia capensis 76_1 Cape rock hyrax 10 10
No Yes Loxodonta africana 76_3 African savanna elephant 18 18
No Yes Echinops telfairi 76 Small Madagascar hedgehog 10 9
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 20 18
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 6 6
No Yes Macropus eugenii 76_1.0 Tammar wallaby 13 13
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 11 11
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 15 14
No Yes Ornithorhynchus anatinus 76_5 Platypus 17 16
No Yes Saccoglossus kowalevskii v3.0   135 133
No Yes Petromyzon marinus 76_7.0 Sea lamprey 4 4
No Yes Meleagris gallopavo 76_2 Turkey 11 11
No Yes Gallus gallus 76_4 Chicken 13 13
No Yes Anas platyrhynchos 76_1.0 Mallard 14 13
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 15 13
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 15 14
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 18 17
No Yes Anolis carolinensis 76_2.0 Green anole 12 12
No Yes Xenopus laevis African clawed frog 14 14
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 14 14
No Yes Latimeria chalumnae 76_1 Coelacanth 12 12
No Yes Lepisosteus oculatus 76 Spotted gar 19 19
No Yes Gadus morhua 76_1 Atlantic cod 18 18
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 25 24
No Yes Takifugu rubripes 76_4 Torafugu 58 47
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 16 16
No Yes Oryzias latipes 76_1 Japanese medaka 21 19
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 16 15
No Yes Poecilia formosa 76 Amazon molly 14 14
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 23 22
No Yes Astyanax mexicanus 76 Mexican tetra 19 17
No Yes Danio rerio 76_9 Zebrafish 31 31
No Yes Oikopleura dioica   10 10
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 8 8
No Yes Ciona intestinalis 76 Vase tunicate 10 10
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 115 115
No Yes Adineta vaga   454 368
No Yes Octopus bimaculoides 280   40 40
No Yes Crassostrea gigas 22 Pacific oyster 748 726
No Yes Lottia gigantea Owl limpet 24 24
No Yes Helobdella robusta   36 36
No Yes Capitella sp. I   34 34
No Yes Danaus plexippus OGS1.0 Monarch butterfly 15 15
No Yes Heliconius melpomene Postman butterfly 15 15
No Yes Bombyx mori Domestic silkworm 16 16
No Yes Nasonia vitripennis Jewel wasp 15 15
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 31 31
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 11 11
No Yes Linepithema humile v1.1 Argentine ant 16 16
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 14 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 10 10
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 11 11
No Yes Atta cephalotes v1.1   15 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 12 12
No Yes Lucilia cuprina Australian sheep blowfly 11 11
No Yes Drosophila grimshawi 1.3   11 11
No Yes Drosophila willistoni 1.3   12 12
No Yes Drosophila pseudoobscura 2.13   12 12
No Yes Drosophila persimilis 1.3   46 46
No Yes Drosophila suzukii   10 10
No Yes Drosophila yakuba 1.3   8 8
No Yes Drosophila simulans 1.3   7 7
No Yes Drosophila sechellia 1.3   10 10
No Yes Drosophila melanogaster 76_5 Fruit fly 28 28
No Yes Drosophila erecta 1.3   8 8
No Yes Drosophila ananassae 1.3   11 11
No Yes Drosophila virilis 1.2   15 15
No Yes Drosophila mojavensis 1.3   9 9
No Yes Megaselia scalaris 22   4 4
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 12 12
No Yes Culex pipiens quinquefasciatus Southern house mosquito 11 11
No Yes Anopheles darlingi 22 American malaria mosquito 9 9
No Yes Anopheles gambiae 49_3j African malaria mosquito 11 11
No Yes Tribolium castaneum 3.0 Red flour beetle 14 14
No Yes Pediculus humanus corporis (Early assembly) Human body louse 12 12
No Yes Acyrthosiphon pisum Pea aphid 10 10
No Yes Rhodnius prolixus 22   10 10
No Yes Daphnia pulex Common water flea 10 9
No Yes Strigamia maritima 22   12 12
No Yes Sarcoptes scabiei   14 12
No Yes Tetranychus urticae Two-spotted spider mite 10 10
No Yes Ixodes scapularis (Preliminary) Black-legged tick 11 11
No Yes Pristionchus pacificus   8 8
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Meloidogyne hapla   4 4
No Yes Onchocerca volvulus 22   9 9
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 16 16
No Yes Caenorhabditis japonica   12 12
No Yes Caenorhabditis brenneri   15 15
No Yes Caenorhabditis remanei   9 9
No Yes Caenorhabditis elegans 76_235 Roundworm 19 19
No Yes Caenorhabditis briggsae 2   7 7
No Yes Trichinella spiralis 22   8 8
No Yes Hymenolepis microstoma   2 2
No Yes Echinococcus multilocularis   5 5
No Yes Echinococcus granulosus   4 4
No Yes Taenia solium Pork tapeworm 6 6
No Yes Schistosoma mansoni   4 4
No Yes Mnemiopsis leidyi Sea walnut 13 11
No Yes Acropora digitifera v1.0   115 108
No Yes Nematostella vectensis 1.0 Starlet sea anemone 39 39
No Yes Hydra vulgaris   6 6
No Yes Amphimedon queenslandica   241 240
No Yes Trichoplax adhaerens   5 5
No Yes Proterospongia sp. ATCC 50818   52 48
No Yes Monosiga brevicollis   2 2
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Mortierella verticillata NRRL 6337   1 1
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Mucor circinelloides   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   2 2
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   2 2
No Yes Melampsora laricis-populina   2 2
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   2 2
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   4 4
No Yes Piloderma croceum F 1598 v1.0   5 5
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   3 3
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   2 2
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   3 3
No Yes Pleurotus ostreatus Oyster mushroom 2 2
No Yes Amanita thiersii Skay4041 v1.0   2 2
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 2
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   2 2
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 2
No Yes Heterobasidion annosum   2 2
No Yes Gloeophyllum trabeumv1.0   2 2
No Yes Sebacina vermifera MAFF 305830 v1.0   2 2
No Yes Fomitiporia mediterranea v1.0   2 2
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   3 3
No Yes Wolfiporia cocos MD-104 SS10 v1.0   4 4
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Dichomitus squalens   1 1
No Yes Trametes versicolor v1.0   3 3
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Podospora anserina   1 1
No Yes Neurospora tetrasperma   3 3
No Yes Cryphonectria parasitica Chestnut blight fungus 5 5
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Acremonium alcalophilumv 1.0   3 3
No Yes Glomerella graminicola 22   3 3
No Yes Fusarium graminearum   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   2 2
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma virens Gv29-8   2 2
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 2
No Yes Botrytis cinerea B05.10   2 2
No Yes Sclerotinia sclerotiorum   3 3
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   4 4
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   2 2
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   3 3
No Yes Cochliobolus victoriae FI3 v1.0   6 6
No Yes Cochliobolus carbonum 26-R-13 v1.0   4 4
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2
No Yes Alternaria brassicicola   2 2
No Yes Cochliobolus lunatus m118 v2.0   3 3
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   3 3
No Yes Stagonospora nodorum   3 3
No Yes Mycosphaerella graminicola IPO323   2 2
No Yes Zasmidium cellare ATCC 36951 v1.0   4 4
No Yes Dothistroma septosporum   3 3
No Yes Septoria musiva v1.0   2 2
No Yes Mycosphaerella fijiensis CIRAD86   5 5
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   3 3
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   3 3
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   3 3
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus sydowii v1.0   3 3
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus glaucus   2 2
No Yes Aspergillus carbonarius ITEM 5010   2 2
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   3 3
No Yes Aspergillus wentii v1.0   3 3
No Yes Aspergillus oryzae RIB40   2 2
No Yes Aspergillus niger 22   2 2
No Yes Aspergillus flavus NRRL3357   2 2
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Hansenula polymorpha v2.0   1 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   1 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   2 2
No Yes Candida tropicalis MYA-3404   2 2
No Yes Candida parapsilosis   2 2
No Yes Pichia stipitis CBS 6054   1 1
No Yes Candida guilliermondii ATCC 6260   2 2
No Yes Debaromyces hansenii   2 2
No Yes Wickerhamomyces anomalus   2 2
No Yes Pichia pastoris GS115   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Candida glabrata CBS138   2 2
No Yes Lachancea kluyveri   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Zygosaccharomyces rouxii   1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Saccharomyces bayanus MIT   1 1
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces octosporus yFS286   2 2
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 2 2
No Yes Catenaria anguillulae PL171 v1.0   2 2
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Spizellomyces punctatus DAOM BR117   2 2
No Yes Dictyostelium discoideum   2 2
No Yes Dictyostelium purpureum   3 3
No Yes Entamoeba dispar 1.2   2 2
No Yes Entamoeba invadens 1.2   4 4
No Yes Entamoeba histolytica 1   3 3
No Yes Selaginella moellendorffii   11 11
No Yes Pinus taeda Loblolly pine 4 4
No Yes Picea abies Norway spruce 5 5
No Yes Eucalyptus grandis v201 Rose gum 16 16
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   13 13
No Yes Citrus clementina v165   7 7
No Yes Citrus sinensis v154 Sweet orange 8 8
No Yes Thellungiella halophila v173   8 8
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 13 13
No Yes Capsella rubella v183   9 9
No Yes Arabidopsis lyrata Lyrate rockcress 8 8
No Yes Arabidopsis thaliana 10 Thale cress 12 12
No Yes Carica papaya Papaya 5 5
No Yes Medicago truncatula Barrel medic 17 17
No Yes Phaseolus vulgaris v186 French bean 7 7
No Yes Glycine max v109 Soybean 10 10
No Yes Cucumis sativus v122 Cucumber 13 13
No Yes Fragaria vesca Wild strawberry 7 7
No Yes Malus domestica v196 Apple 14 14
No Yes Prunus persica v139 Peach 8 8
No Yes Linum usitatissimum v200 Flax 14 14
No Yes Manihot esculenta v147 Cassava 8 8
No Yes Populus trichocarpa v156 Black cottonwood 12 12
No Yes Vitis vinifera Wine grape 5 5
No Yes Mimulus guttatus v140 Spotted monkey flower 11 11
No Yes Solanum lycopersicum v.2.3 Tomato 8 8
No Yes Solanum tuberosum Potato 10 10
No Yes Actinidia chinensis Hongyang   8 8
No Yes Aquilegia coerulea v195   26 26
No Yes Triticum urartu 22   10 10
No Yes Triticum aestivum 22 Bread wheat 21 21
No Yes Aegilops tauschii 22   11 11
No Yes Brachypodium distachyon Stiff brome 15 15
No Yes Oryza barthii 22 African wild rice 9 9
No Yes Oryza meridionalis 22   14 14
No Yes Oryza glumaepatula 22   14 14
No Yes Oryza glaberrima African rice 4 4
No Yes Oryza punctata 22   20 20
No Yes Oryza nivara 22   13 13
No Yes Oryza brachyantha 22 Malo sina 8 8
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 10 10
No Yes Oryza sativa v193 Rice 8 8
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 7 7
No Yes Panicum virgatum v202 Switchgrass 20 20
No Yes Setaria italica v164 Foxtail millet 18 18
No Yes Zea mays subsp. mays Maize 28 28
No Yes Zea mays v181 Maize 33 33
No Yes Sorghum bicolor Sorghum 10 10
No Yes Musa balbisiana Balbis banana 8 8
No Yes Musa acuminata 22 Wild Malaysian banana 10 10
No Yes Amborella trichopoda 22   5 5
No Yes Physcomitrella patens   10 10
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   4 4
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   10 10
No Yes Volvox carteri v199   5 5
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Ostreococcus sp. RCC809   2 2
No Yes Ostreococcus lucimarinus CCE9901   4 4
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   2 2
No Yes Micromonas sp. RCC299   4 4
No Yes Micromonas pusilla CCMP1545 v3.0   3 3
No Yes Cyanidioschyzon merolae strain 10D 22   3 3
No Yes Cyanidioschyzon merolae   3 3
No Yes Porphyridium purpureum 02_2012   9 9
No Yes Thecamonas trahens ATCC 50062   5 5
No Yes Bigelowiella natans CCMP2755 22   59 57
No Yes Giardia lamblia 2.3   2 2
No Yes Cyanophora paradoxa   7 7
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   4 4
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma congolense 2.4   3 3
No Yes Ectocarpus siliculosus   3 3
No Yes Aureococcus anophagefferens   5 5
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   3 3
No Yes Pythium arrhenomanes ATCC 12531 22   4 4
No Yes Pythium ultimum v1.7-2   5 5
No Yes Pythium aphanidermatum DAOM BR444 22   4 3
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   4 3
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 2 2
No Yes Phytophthora sojae 1.1   2 2
No Yes Phytophthora infestans T30-4   4 4
No Yes Phytophthora capsici   2 2
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   7 7
No Yes Thalassiosira pseudonana CCMP1335   2 2
No Yes Perkinsus marinus ATCC 50983   15 15
No Yes Paramecium tetraurelia   5 5
No Yes Tetrahymena thermophila SB210 1   10 10
No Yes Neospora caninum   3 3
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   1 1
No Yes Toxoplasma gondii GT1   2 2
No Yes Babesia bovis T2Bo   2 2
No Yes Theileria annulata   1 1
No Yes Plasmodium falciparum 3D7   2 2
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   37 36
No Yes Naegleria gruberi   225 167
No Yes Trichomonas vaginalis   13 13
No Yes Guillardia theta CCMP2712 v1.0   21 21
No Yes Emiliania huxleyi CCMP1516   43 43
No Yes Acholeplasma laidlawii PG-8A   1 1
No Yes Thermobaculum terrenum ATCC BAA-798   2 2
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Microcoleus sp. PCC 7113   4 4
No Yes Trichodesmium erythraeum IMS101   6 5
No Yes Geitlerinema sp. PCC 7407   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Gloeocapsa sp. PCC 7428   3 3
No Yes cyanobacterium UCYN-A   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Gloeobacter violaceus PCC 7421   4 4
No Yes Rivularia sp. PCC 7116   5 5
No Yes Calothrix sp. PCC 7507   4 4
No Yes Anabaena variabilis ATCC 29413   5 4
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7107   2 2
No Yes Nostoc punctiforme PCC 73102   5 5
No Yes Nostoc sp. PCC 7120   4 4
No Yes Nostoc sp. PCC 7524   3 3
No Yes Anabaena sp. 90   2 2
No Yes Conexibacter woesei DSM 14684   6 6
No Yes Acidimicrobium ferrooxidans DSM 10331   3 3
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Nakamurella multipartita DSM 44233   4 4
No Yes Acidothermus cellulolyticus 11B   1 1
No Yes Modestobacter marinus   3 3
No Yes Blastococcus saxobsidens DD2   1 1
No Yes Kineococcus radiotolerans SRS30216   3 3
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Stackebrandtia nassauensis DSM 44728   3 3
No Yes Frankia symbiont of Datisca glomerata   4 4
No Yes Frankia sp. EAN1pec   7 7
No Yes Frankia alni ACN14a   8 8
No Yes Thermobifida fusca YX   2 2
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   3 3
No Yes Thermomonospora curvata DSM 43183   3 3
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Kitasatospora setae KM-6054   2 2
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   3 3
No Yes Streptomyces griseus subsp. griseus NBRC 13350   3 3
No Yes Streptomyces bingchenggensis BCW-1   3 3
No Yes Streptomyces violaceusniger Tu 4113   5 5
No Yes Streptomyces avermitilis MA-4680   4 4
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces scabiei 87.22   3 3
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   4 4
No Yes Actinosynnema mirum DSM 43827   4 4
No Yes Saccharomonospora viridis DSM 43017   2 2
No Yes Pseudonocardia dioxanivorans CB1190   3 3
No Yes Saccharopolyspora erythraea NRRL 2338   5 5
No Yes Amycolatopsis mediterranei U32   5 5
No Yes Kribbella flavida DSM 17836   3 3
No Yes Nocardioides sp. JS614   1 1
No Yes Microlunatus phosphovorus NM-1   4 4
No Yes Salinispora arenicola CNS-205   1 1
No Yes Salinispora tropica CNB-440   2 2
No Yes Verrucosispora maris AB-18-032   3 3
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Actinoplanes sp. N902-109   4 4
No Yes Actinoplanes sp. SE50/110   4 4
No Yes Actinoplanes missouriensis 431   6 6
No Yes Tsukamurella paurometabola DSM 20162   2 2
No Yes Gordonia polyisoprenivorans VH2   2 2
No Yes Gordonia bronchialis DSM 43247   2 2
No Yes Rhodococcus jostii RHA1   8 8
No Yes Rhodococcus equi 103S   1 1
No Yes Rhodococcus opacus B4   3 3
No Yes Rhodococcus erythropolis PR4   5 5
No Yes Nocardia cyriacigeorgica GUH-2   3 3
No Yes Nocardia farcinica IFM 10152   2 2
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium sp. JLS   2 2
No Yes Mycobacterium intracellulare ATCC 13950   3 3
No Yes Mycobacterium avium 104   2 2
No Yes Mycobacterium vanbaalenii PYR-1   5 5
No Yes Mycobacterium canettii CIPT 140010059   2 2
No Yes Mycobacterium africanum GM041182   2 2
No Yes Mycobacterium tuberculosis KZN 1435   2 2
No Yes Mycobacterium tuberculosis   2 2
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   2 2
No Yes Mycobacterium rhodesiae NBB3   3 3
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Mycobacterium chubuense NBB4   2 2
No Yes Mycobacterium marinum M   5 5
No Yes Corynebacterium resistens DSM 45100   1 1
No Yes Corynebacterium aurimucosum ATCC 700975   2 2
No Yes Corynebacterium jeikeium K411   1 1
No Yes Corynebacterium variabile DSM 44702   1 1
No Yes Corynebacterium diphtheriae NCTC 13129   1 1
No Yes Sanguibacter keddieii DSM 10542   1 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Leifsonia xyli subsp. xyli str. CTCB07   1 1
No Yes Microbacterium testaceum StLB037   1 1
No Yes Jonesia denitrificans DSM 20603   1 1
No Yes Intrasporangium calvum DSM 43043   2 2
No Yes Brachybacterium faecium DSM 4810   1 1
No Yes Isoptericola variabilis 225   3 3
No Yes Xylanimonas cellulosilytica DSM 15894   2 2
No Yes Cellulomonas flavigena DSM 20109   3 3
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter chlorophenolicus A6   1 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter arilaitensis Re117   1 1
No Yes Kocuria rhizophila DC2201   2 2
No Yes Rothia mucilaginosa DY-18   1 1
No Yes Rothia dentocariosa ATCC 17931   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Renibacterium salmoninarum ATCC 33209   1 1
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Arcanobacterium haemolyticum DSM 20595   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   6 6
No Yes Dehalococcoides ethenogenes 195   1 1
No Yes Anaerolinea thermophila UNI-1   3 3
No Yes Thermomicrobium roseum DSM 5159   3 3
No Yes Sphaerobacter thermophilus DSM 20745   2 2
No Yes Herpetosiphon aurantiacus DSM 785   5 5
No Yes Roseiflexus sp. RS-1   6 5
No Yes Roseiflexus castenholzii DSM 13941   4 4
No Yes Chloroflexus sp. MS-G   4 3
No Yes Chloroflexus sp. Y-400-fl   7 7
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   7 7
No Yes Truepera radiovictrix DSM 17093   4 4
No Yes Deinococcus gobiensis I-0   2 2
No Yes Deinococcus deserti VCD115   3 3
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Deinococcus radiodurans R1   1 1
No Yes Oceanithermus profundus DSM 14977   3 3
No Yes Marinithermus hydrothermalis DSM 14884   2 2
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Thermus sp. CCB_US3_UF1   3 2
No Yes Thermus scotoductus SA-01   3 3
No Yes Symbiobacterium thermophilum IAM 14863   1 1
No Yes Clostridiales genomosp. BVAB3 str. UPII9-5   2 2
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Eubacterium siraeum   1 1
No Yes Clostridium thermocellum ATCC 27405   3 3
No Yes Ruminococcus bromii   1 1
No Yes Sulfobacillus acidophilus DSM 10332   2 2
No Yes butyrate-producing bacterium SS3/4   1 1
No Yes Thermincola potens JR   13 13
No Yes Desulfosporosinus orientis DSM 765   2 1
No Yes Desulfotomaculum acetoxidans DSM 771   2 2
No Yes Eubacterium eligens ATCC 27750   2 2
No Yes Clostridium phytofermentans ISDg   1 1
No Yes [Ruminococcus] obeum   1 1
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Roseburia intestinalis   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Syntrophomonas wolfei subsp. wolfei str. Goettingen   1 1
No Yes Heliobacterium modesticaldum Ice1   1 1
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Candidatus Arthromitus sp. SFB-mouse-Japan   1 1
No Yes Clostridium novyi NT   1 1
No Yes Clostridium kluyveri DSM 555   1 1
No Yes Clostridium beijerinckii NCIMB 8052   2 2
No Yes Clostridium cellulovorans 743B   2 2
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Mahella australiensis 50-1 BON   3 3
No Yes Caldicellulosiruptor obsidiansis OB47   1 1
No Yes Caldicellulosiruptor kronotskyensis 2002   1 1
No Yes Caldicellulosiruptor hydrothermalis 108   2 2
No Yes Caldicellulosiruptor owensensis OL   3 3
No Yes Caldicellulosiruptor lactoaceticus 6A   1 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   1 1
No Yes Caldicellulosiruptor bescii DSM 6725   1 1
No Yes Carboxydothermus hydrogenoformans Z-2901   2 2
No Yes Halanaerobium hydrogeniformans   1 1
No Yes Exiguobacterium sp. MH3   2 2
No Yes Exiguobacterium sp. AT1b   1 1
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus mucilaginosus 3016   6 6
No Yes Bacillus selenitireducens MLS10   1 1
No Yes Geobacillus thermoglucosidasius C56-YS93   1 1
No Yes Geobacillus kaustophilus HTA426   1 1
No Yes Bacillus sp. 1NLA3E   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus megaterium DSM 319   1 1
No Yes Candidatus Cloacamonas acidaminovorans   2 2
No Yes Gemmatimonas aurantiaca T-27   2 2
No Yes Melioribacter roseus P3M   1 1
No Yes Ignavibacterium album JCM 16511   10 10
No Yes Chlorobium chlorochromatii CaD3   3 2
No Yes Chlorobium phaeobacteroides DSM 266   2 1
No Yes Chloroherpeton thalassium ATCC 35110   3 3
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   7 7
No Yes Saprospira grandis str. Lewin   1 1
No Yes Niastella koreensis GR20-10   12 12
No Yes Chitinophaga pinensis DSM 2588   5 5
No Yes Salinibacter ruber M8   3 3
No Yes Rhodothermus marinus DSM 4252   4 4
No Yes Flexibacter litoralis DSM 6794   5 5
No Yes Belliella baltica DSM 15883   2 2
No Yes Cyclobacterium marinum DSM 745   5 5
No Yes Fibrella aestuarina   4 4
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   6 5
No Yes Cytophaga hutchinsonii ATCC 33406   9 8
No Yes Spirosoma linguale DSM 74   13 13
No Yes Runella slithyformis DSM 19594   3 3
No Yes Parabacteroides distasonis ATCC 8503   2 2
No Yes Tannerella forsythia ATCC 43037   2 2
No Yes Paludibacter propionicigenes WB4   4 4
No Yes Odoribacter splanchnicus DSM 20712   5 5
No Yes Bacteroides sp. CF50   2 2
No Yes Prevotella denticola F0289   2 2
No Yes Prevotella ruminicola 23   5 5
No Yes Porphyromonas asaccharolytica DSM 20707   3 3
No Yes Porphyromonas gingivalis ATCC 33277   1 1
No Yes Alistipes finegoldii DSM 17242   2 2
No Yes Bacteroides salanitronis DSM 18170   3 3
No Yes Bacteroides helcogenes P 36-108   3 3
No Yes Bacteroides vulgatus ATCC 8482   3 3
No Yes Bacteroides thetaiotaomicron VPI-5482   9 9
No Yes Bacteroides fragilis YCH46   2 2
No Yes Pedobacter saltans DSM 12145   9 9
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Pedobacter heparinus DSM 2366   7 6
No Yes Sphingobacterium sp. 21   3 3
No Yes Fluviicola taffensis DSM 16823   12 11
No Yes Owenweeksia hongkongensis DSM 17368   8 8
No Yes Zunongwangia profunda SM-A87   3 3
No Yes Krokinobacter sp. 4H-3-7-5   7 6
No Yes Gramella forsetii KT0803   2 2
No Yes Lacinutrix sp. 5H-3-7-4   3 3
No Yes Maribacter sp. HTCC2170   3 3
No Yes Robiginitalea biformata HTCC2501   3 3
No Yes Croceibacter atlanticus HTCC2559   2 2
No Yes Aequorivita sublithincola DSM 14238   3 3
No Yes Zobellia galactanivorans   6 6
No Yes Cellulophaga algicola DSM 14237   2 2
No Yes Cellulophaga lytica DSM 7489   4 4
No Yes Flavobacteriaceae bacterium 3519-10   3 3
No Yes Polaribacter sp. MED152   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Flavobacterium indicum GPTSA100-9   4 4
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Flavobacterium branchiophilum FL-15   4 4
No Yes Flavobacterium columnare ATCC 49512   2 2
No Yes Flavobacterium johnsoniae UW101   8 7
No Yes Fibrobacter succinogenes subsp. succinogenes S85   1 1
No Yes Phycisphaera mikurensis NBRC 102666   1 1
No Yes Isosphaera pallida ATCC 43644   7 7
No Yes Planctomyces brasiliensis DSM 5305   2 2
No Yes Planctomyces limnophilus DSM 3776   4 4
No Yes Rhodopirellula baltica SH 1   4 4
No Yes Pirellula staleyi DSM 6068   7 7
No Yes Methylacidiphilum infernorum V4   1 1
No Yes Opitutus terrae PB90-1   17 9
No Yes Akkermansia muciniphila ATCC BAA-835   1 1
No Yes Turneriella parva DSM 21527   4 4
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   4 4
No Yes Leptospira interrogans serovar Lai str. IPAV   9 9
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Brachyspira murdochii DSM 12563   2 2
No Yes Brachyspira intermedia PWS/A   2 2
No Yes Brachyspira pilosicoli 95/1000   2 2
No Yes Brachyspira hyodysenteriae WA1   2 2
No Yes Borrelia garinii PBi   1 1
No Yes Borrelia bissettii DN127   1 1
No Yes Borrelia afzelii PKo   1 1
No Yes Borrelia burgdorferi B31   1 1
No Yes Borrelia recurrentis A1   1 1
No Yes Borrelia duttonii Ly   1 1
No Yes Borrelia crocidurae str. Achema   1 1
No Yes Borrelia turicatae 91E135   2 2
No Yes Borrelia hermsii DAH   1 1
No Yes Spirochaeta smaragdinae DSM 11293   3 2
No Yes Sphaerochaeta coccoides DSM 17374   1 1
No Yes Spirochaeta caldaria DSM 7334   3 3
No Yes Treponema azotonutricium ZAS-9   2 2
No Yes Treponema primitia ZAS-2   2 2
No Yes Treponema brennaborense DSM 12168   1 1
No Yes Treponema paraluiscuniculi Cuniculi A   1 1
No Yes Treponema succinifaciens DSM 2489   3 3
No Yes Treponema pallidum subsp. pallidum SS14   2 2
No Yes Treponema denticola ATCC 35405   2 2
No Yes Spirochaeta africana DSM 8902   3 3
No Yes Spirochaeta thermophila DSM 6192   1 1
No Yes Thermodesulfatator indicus DSM 15286   2 2
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Deferribacter desulfuricans SSM1   1 1
No Yes Flexistipes sinusarabici DSM 4947   2 2
No Yes Marinitoga piezophila KA3   1 1
No Yes Petrotoga mobilis SJ95   2 2
No Yes Mesotoga prima MesG1.Ag.4.2   3 3
No Yes Fervidobacterium pennivorans DSM 9078   2 2
No Yes Fervidobacterium nodosum Rt17-B1   1 1
No Yes Thermosipho melanesiensis BI429   3 3
No Yes Thermosipho africanus TCF52B   2 2
No Yes Thermotoga thermarum DSM 5069   1 1
No Yes Thermotoga naphthophila RKU-10   1 1
No Yes Thermotoga petrophila RKU-1   1 1
No Yes Thermovibrio ammonificans HB-1   2 2
No Yes Desulfurobacterium thermolithotrophum DSM 11699   1 1
No Yes Persephonella marina EX-H1   2 2
No Yes Thermocrinis albus DSM 14484   3 3
No Yes Hydrogenobacter thermophilus TK-6   2 2
No Yes Elusimicrobium minutum Pei191   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Caldisericum exile AZM16c01   4 2
No Yes Candidatus Chloracidobacterium thermophilum B   6 5
No Yes Candidatus Solibacter usitatus Ellin6076   20 16
No Yes Granulicella tundricola MP5ACTX9   10 8
No Yes Granulicella mallensis MP5ACTX8   25 21
No Yes Candidatus Koribacter versatilis Ellin345   6 6
No Yes Terriglobus saanensis SP1PR4   9 8
No Yes Terriglobus roseus DSM 18391   3 3
No Yes Acidobacterium capsulatum ATCC 51196   3 2
No Yes Candidatus Nitrospira defluvii   4 3
No Yes Leptospirillum ferrooxidans C2-3   1 1
No Yes Leptotrichia buccalis C-1013-b   1 1
No Yes candidate division WWE3 bacterium RAAC2_WWE3_1   1 1
No Yes candidate division SR1 bacterium RAAC1_SR1_1   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 53993   1 1
No Yes Bacteriovorax marinus SJ   2 2
No Yes Bdellovibrio bacteriovorus HD100   4 3
No Yes Nitratifractor salsuginis DSM 16511   1 1
No Yes Arcobacter sp. L   1 1
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Campylobacter lari RM2100   1 1
No Yes Campylobacter sp. 03-427   1 1
No Yes Helicobacter cetorum MIT 00-7128   1 1
No Yes Sulfurovum sp. NBC37-1   1 1
No Yes Syntrophus aciditrophicus SB   1 1
No Yes Desulfomonile tiedjei DSM 6799   2 2
No Yes Syntrophobacter fumaroxidans MPOB   9 6
No Yes Desulfurivibrio alkaliphilus AHT2   4 4
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Desulfobulbus propionicus DSM 2032   1 1
No Yes Desulfatibacillum alkenivorans AK-01   5 4
No Yes Desulfococcus oleovorans Hxd3   5 4
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Desulfovibrio salexigens DSM 2638   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   2 1
No Yes Geobacter daltonii FRC-32   5 5
No Yes Geobacter sp. M21   3 3
No Yes Geobacter uraniireducens Rf4   7 7
No Yes Geobacter lovleyi SZ   1 1
No Yes Geobacter bemidjiensis Bem   3 3
No Yes Geobacter sulfurreducens KN400   5 5
No Yes Geobacter metallireducens GS-15   3 3
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Pelobacter carbinolicus DSM 2380   1 1
No Yes Haliangium ochraceum DSM 14365   12 11
No Yes Sorangium cellulosum 'So ce 56'   33 30
No Yes Anaeromyxobacter sp. Fw109-5   4 4
No Yes Anaeromyxobacter dehalogenans 2CP-1   5 5
No Yes Stigmatella aurantiaca DW4/3-1   15 15
No Yes Corallococcus coralloides DSM 2259   11 11
No Yes Myxococcus xanthus DK 1622   9 9
No Yes Myxococcus fulvus HW-1   8 8
No Yes Azoarcus sp. KH32C   5 5
No Yes Azoarcus sp. BH72   1 1
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   4 4
No Yes Thiomonas arsenitoxydans   1 1
No Yes Thiomonas intermedia K12   1 1
No Yes Leptothrix cholodnii SP-6   4 4
No Yes Burkholderia phytofirmans PsJN   2 2
No Yes Burkholderia phymatum STM815   2 2
No Yes Burkholderia xenovorans LB400   5 5
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   1 1
No Yes Ralstonia solanacearum CFBP2957   2 2
No Yes Burkholderia sp. CCGE1002   3 3
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   3 3
No Yes Burkholderia vietnamiensis G4   4 4
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Ramlibacter tataouinensis TTB310   2 2
No Yes Delftia sp. Cs1-4   2 2
No Yes Delftia acidovorans SPH-1   1 1
No Yes Polaromonas sp. JS666   2 2
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Rhodoferax ferrireducens T118   3 3
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Collimonas fungivorans Ter331   2 2
No Yes Advenella kashmirensis WT001   2 2
No Yes Thiobacillus denitrificans ATCC 25259   1 1
No Yes Nitrosospira multiformis ATCC 25196   3 2
No Yes Nitrosomonas sp. Is79A3   1 1
No Yes Sideroxydans lithotrophicus ES-1   2 1
No Yes Methylotenera versatilis 301   1 1
No Yes Magnetococcus marinus MC-1   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Maricaulis maris MCS10   2 2
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Pseudovibrio sp. FO-BEG1   3 3
No Yes Jannaschia sp. CCS1   1 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Roseobacter litoralis Och 149   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans 621H   1 1
No Yes Acetobacter pasteurianus IFO 3283-01   1 1
No Yes Candidatus Puniceispirillum marinum IMCC1322   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Methylobacterium chloromethanicum CM4   2 2
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium populi BJ001   3 3
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   3 3
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella ovis ATCC 25840   1 1
No Yes Sinorhizobium fredii NGR234   2 2
No Yes Rhizobium leguminosarum bv. viciae 3841   2 2
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Mesorhizobium sp. BNC1   2 2
No Yes Mesorhizobium opportunistum WSM2075   1 1
No Yes Methylocella silvestris BL2   4 4
No Yes Beijerinckia indica subsp. indica ATCC 9039   2 2
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Bradyrhizobium japonicum USDA 110   7 7
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Methylocystis sp. SC2   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   1 1
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Oceanimonas sp. GK1   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio harveyi ATCC BAA-1116   1 1
No Yes Vibrio parahaemolyticus RIMD 2210633   2 2
No Yes Vibrio splendidus LGP32   1 1
No Yes Vibrio anguillarum 775   2 1
No Yes Idiomarina loihiensis L2TR   1 1
No Yes Ferrimonas balearica DSM 9799   1 1
No Yes Shewanella piezotolerans WP3   2 1
No Yes Shewanella halifaxensis HAW-EB4   1 1
No Yes Shewanella sediminis HAW-EB3   1 1
No Yes Shewanella denitrificans OS217   3 3
No Yes Shewanella pealeana ATCC 700345   2 2
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   2 2
No Yes Shewanella sp. MR-4   2 2
No Yes Shewanella violacea DSS12   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Colwellia psychrerythraea 34H   4 4
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Pseudoalteromonas atlantica T6c   3 3
No Yes Pseudoalteromonas haloplanktis TAC125   2 2
No Yes Glaciecola sp. 4H-3-7+YE-5   3 3
No Yes Glaciecola nitratireducens FR1064   1 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Marinobacter sp. BSs20148   2 2
No Yes Alteromonas sp. SN2   1 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Rhodanobacter denitrificans   2 2
No Yes Frateuria aurantia DSM 6220   4 4
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Stenotrophomonas maltophilia K279a   2 2
No Yes Xanthomonas axonopodis pv. citri str. 306   2 2
No Yes Xanthomonas albilineans GPE PC73   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   2 2
No Yes Halothiobacillus neapolitanus c2   2 2
No Yes Thioalkalivibrio sp. K90mix   2 2
No Yes Nitrosococcus watsonii C-113   1 1
No Yes Nitrosococcus halophilus Nc4   2 2
No Yes Nitrosococcus oceani ATCC 19707   2 2
No Yes gamma proteobacterium HdN1   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Serratia sp. ATCC 39006   3 3
No Yes Serratia proteamaculans 568   1 1
No Yes Dickeya zeae Ech1591   2 2
No Yes Pantoea sp. At-9b   1 1
No Yes Enterobacteriaceae bacterium strain FGI 57   1 1
No Yes Salmonella bongori NCTC 12419   1 1
No Yes Escherichia fergusonii ATCC 35469   1 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Azotobacter vinelandii DJ   3 3
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   2 2
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   3 3
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas stutzeri A1501   2 2
No Yes Pseudomonas fulva 12-X   2 2
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas protegens Pf-5   2 2
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas mendocina ymp   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   4 4
No Yes Pseudomonas sp. VLB120   2 2
No Yes Psychrobacter sp. G   1 1
No Yes Psychrobacter sp. PRwf-1   1 1
No Yes Psychrobacter cryohalolentis K5   1 1
No Yes Moraxella catarrhalis RH4   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Methylophaga sp. JAM1   2 2
No Yes Candidatus Caldiarchaeum subterraneum   1 1
No Yes Cenarchaeum symbiosum A   6 5
No Yes Candidatus Nitrosopumilus sp. AR2   1 1
No Yes Nitrosopumilus maritimus SCM1   2 2
No Yes Pyrolobus fumarii 1A   1 1
No Yes Ignisphaera aggregans DSM 17230   1 1
No Yes Sulfolobus tokodaii str. 7   1 1
No Yes Pyrobaculum sp. 1860   1 1
No Yes Thermoproteus uzoniensis 768-20   1 1
No Yes halophilic archaeon DL31   2 2
No Yes Methanocella arvoryzae MRE50   3 3
No Yes Methanocella conradii HZ254   1 1
No Yes Methanocella paludicola SANAE   2 2
No Yes Methanosaeta harundinacea 6Ac   2 2
No Yes Methanosaeta thermophila PT   1 1
No Yes Methanosaeta concilii GP6   2 1
No Yes Methanohalobium evestigatum Z-7303   1 1
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Methanosphaerula palustris E1-9c   10 8
No Yes Methanoregula boonei 6A8   2 2
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Methanoplanus petrolearius DSM 11571   1 1
No Yes Methanoculleus bourgensis MS2   3 3
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Halopiger xanaduensis SH-6   3 3
No Yes Haloterrigena turkmenica DSM 5511   3 3
No Yes Natrinema sp. J7-2   1 1
No Yes Haloquadratum walsbyi DSM 16790   3 3
No Yes Halogeometricum borinquense DSM 11551   2 2
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Halomicrobium mukohataei DSM 12286   4 4
No Yes Haloarcula marismortui ATCC 43049   1 1
No Yes Halalkalicoccus jeotgali B3   3 3
No Yes Methanococcus voltae A3   1 1
No Yes Methanothermobacter thermautotrophicus str. Delta H   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 20 18
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 21 21
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 16 16
No Yes Ascaris suum Victoria/Ghent Pig roundworm 10 10
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 14 14
No Yes Cryptococcus neoformans var. grubii H99   2 2
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Coccidioides posadasii str. Silveira   2 2
No Yes Coccidioides immitis H538.4   1 1
No Yes Histoplasma capsulatum H88   2 2
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Candida albicans WO-1   1 1
No Yes Saccharomyces cerevisiae FostersB   1 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae W303   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Schizosaccharomyces pombe 972h-   2 2
No Yes Batrachochytrium dendrobatidis JEL423   2 2
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 7 7
No Yes Hordeum vulgare 22 Domesticated barley 12 12
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 11 11
No Yes Neospora caninum Nc-Liverpool 6.2   3 3
No Yes Plasmodium falciparum HB3   2 2
No Yes Plasmodium falciparum Dd2   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   4 4
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Synechococcus sp. CC9902   1 1
No Yes Synechococcus sp. CC9605   1 1
No Yes Prochlorococcus marinus str. MIT 9313   1 1
No Yes Prochlorococcus marinus str. MIT 9303   1 1
No Yes Crinalium epipsammum PCC 9333   3 3
No Yes Oscillatoria nigro-viridis PCC 7112   2 2
No Yes Oscillatoria acuminata PCC 6304   9 8
No Yes Arthrospira platensis NIES-39   15 13
No Yes Cyanothece sp. PCC 7822   4 4
No Yes Cyanothece sp. PCC 7424   4 4
No Yes Cyanothece sp. ATCC 51142   2 2
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   5 4
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   3 3
No Yes Cylindrospermum stagnale PCC 7417   5 5
No Yes Anabaena cylindrica PCC 7122   6 5
No Yes Spiroplasma syrphidicola EA-1   3 3
No Yes Spiroplasma chrysopicola DF-1   5 5
No Yes Frankia sp. EuI1c   4 4
No Yes Frankia sp. CcI3   4 4
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   3 3
No Yes Streptomyces rapamycinicus NRRL 5491   5 5
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   2 2
No Yes Streptomyces collinus Tu 365   5 5
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   4 4
No Yes Saccharothrix espanaensis DSM 44229   6 6
No Yes Amycolatopsis mediterranei RB   5 5
No Yes Amycolatopsis mediterranei S699   5 5
No Yes Amycolatopsis mediterranei S699   5 5
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Actinoplanes friuliensis DSM 7358   3 3
No Yes Rhodococcus pyridinivorans SB3094   1 1
No Yes Rhodococcus erythropolis CCM2595   4 4
No Yes Nocardia brasiliensis ATCC 700358   3 3
No Yes Mycobacterium sp. MOTT36Y   1 1
No Yes Mycobacterium sp. JDM601   2 2
No Yes Mycobacterium liflandii 128FXT   3 3
No Yes Mycobacterium sp. KMS   2 2
No Yes Mycobacterium sp. MCS   2 2
No Yes Mycobacterium yongonense 05-1390   2 2
No Yes Mycobacterium intracellulare MOTT-64   2 2
No Yes Mycobacterium indicus pranii MTCC 9506   1 1
No Yes Mycobacterium intracellulare MOTT-02   2 2
No Yes Mycobacterium avium subsp. paratuberculosis MAP4   2 2
No Yes Mycobacterium avium subsp. paratuberculosis K-10   2 2
No Yes Mycobacterium canettii CIPT 140070017   2 2
No Yes Mycobacterium canettii CIPT 140060008   2 2
No Yes Mycobacterium canettii CIPT 140070008   2 2
No Yes Mycobacterium canettii CIPT 140070010   2 2
No Yes Mycobacterium tuberculosis EAI5/NITR206   2 2
No Yes Mycobacterium tuberculosis EAI5   2 2
No Yes Mycobacterium tuberculosis CAS/NITR204   2 2
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   2 2
No Yes Mycobacterium tuberculosis UT205   2 2
No Yes Mycobacterium tuberculosis RGTB423   1 1
No Yes Mycobacterium tuberculosis RGTB327   2 2
No Yes Mycobacterium tuberculosis CTRI-2   2 2
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   2 2
No Yes Mycobacterium tuberculosis KZN 605   2 2
No Yes Mycobacterium tuberculosis KZN 4207   2 2
No Yes Mycobacterium tuberculosis CCDC5180   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis H37Ra   2 2
No Yes Mycobacterium tuberculosis str. Haarlem/NITR202   1 1
No Yes Mycobacterium tuberculosis str. Haarlem   2 2
No Yes Mycobacterium tuberculosis F11   2 2
No Yes Mycobacterium tuberculosis H37Rv   2 2
No Yes Mycobacterium tuberculosis CDC1551   2 2
No Yes Mycobacterium bovis AF2122/97   2 2
No Yes Mycobacterium bovis BCG str. Korea 1168P   2 2
No Yes Mycobacterium bovis BCG str. Mexico   2 2
No Yes Mycobacterium bovis BCG str. Tokyo 172   2 2
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium kansasii ATCC 12478   7 7
No Yes Corynebacterium maris DSM 45190   1 1
No Yes Corynebacterium halotolerans YIM 70093 = DSM 44683   1 1
No Yes Corynebacterium argentoratense DSM 44202   1 1
No Yes Corynebacterium callunae DSM 20147   1 1
No Yes Corynebacterium diphtheriae INCA 402   1 1
No Yes Corynebacterium diphtheriae HC02   1 1
No Yes Corynebacterium diphtheriae 31A   1 1
No Yes Bifidobacterium asteroides PRL2011   1 1
No Yes Bifidobacterium bifidum BGN4   1 1
No Yes Chthonomonas calidirosea T49   3 3
No Yes Deinococcus peraridilitoris DSM 19664   3 3
No Yes Thermus oshimai JL-2   2 2
No Yes Thermus thermophilus JL-18   1 1
No Yes Thermus thermophilus HB8   3 3
No Yes Eubacterium siraeum V10Sc8a   1 1
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   1 1
No Yes Faecalibacterium prausnitzii L2-6   1 1
No Yes Sulfobacillus acidophilus TPY   2 2
No Yes Clostridium acidurici 9a   1 1
No Yes Desulfosporosinus meridiei DSM 13257   6 2
No Yes Desulfotomaculum gibsoniae DSM 7213   1 1
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   1 1
No Yes Roseburia intestinalis XB6B4   3 3
No Yes Candidatus Arthromitus sp. SFB-mouse-Yit   1 1
No Yes Clostridium saccharobutylicum DSM 13864   2 2
No Yes Clostridium autoethanogenum DSM 10061   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Clostridium kluyveri NBRC 12016   1 1
No Yes Clostridium botulinum H04402 065   1 1
No Yes Clostridium botulinum BKT015925   2 1
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   2 2
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Thermacetogenium phaeum DSM 12270   1 1
No Yes Lactobacillus johnsonii N6.2   1 1
No Yes Lactobacillus johnsonii DPC 6026   1 1
No Yes Lactobacillus johnsonii NCC 533   1 1
No Yes Exiguobacterium antarcticum B7   1 1
No Yes Thermobacillus composti KWC4   2 2
No Yes Paenibacillus sp. Y412MC10   5 5
No Yes Paenibacillus mucilaginosus KNP414   6 6
No Yes Paenibacillus mucilaginosus K02   6 6
No Yes Geobacillus sp. Y4.1MC1   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   1 1
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus infantis NRRL B-14911   2 2
No Yes Chlorobium phaeobacteroides BS1   1 1
No Yes Salinibacter ruber DSM 13855   3 3
No Yes Rhodothermus marinus SG0.5JP17-172   4 4
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   6 6
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Prevotella dentalis DSM 3688   3 3
No Yes Porphyromonas gingivalis TDC60   1 1
No Yes Porphyromonas gingivalis W83   1 1
No Yes Bacteroides xylanisolvens XB1A   2 2
No Yes Bacteroides fragilis 638R   3 3
No Yes Bacteroides fragilis NCTC 9343   7 7
No Yes Nonlabens dokdonensis DSW-6   3 3
No Yes Psychroflexus torquis ATCC 700755   2 2
No Yes Fibrobacter succinogenes subsp. succinogenes S85   1 1
No Yes Chlamydophila pneumoniae LPCoLN   1 1
No Yes Singulisphaera acidiphila DSM 18658   5 5
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   4 4
No Yes Leptospira interrogans serovar Lai str. 56601   9 9
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   8 8
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Brachyspira pilosicoli WesB   3 3
No Yes Brachyspira pilosicoli B2904   3 3
No Yes Brachyspira pilosicoli P43/6/78   2 2
No Yes Borrelia garinii NMJW1   1 1
No Yes Borrelia garinii BgVir   1 1
No Yes Borrelia afzelii HLJ01   1 1
No Yes Borrelia afzelii PKo   1 1
No Yes Borrelia burgdorferi CA382   1 1
No Yes Borrelia burgdorferi JD1   1 1
No Yes Borrelia burgdorferi N40   1 1
No Yes Borrelia burgdorferi ZS7   1 1
No Yes Treponema pedis str. T A4   1 1
No Yes Treponema pallidum str. Fribourg-Blanc   1 1
No Yes Treponema pallidum subsp. pertenue str. Gauthier   1 1
No Yes Treponema pallidum subsp. pertenue str. CDC2   1 1
No Yes Treponema pallidum subsp. pertenue str. SamoaD   1 1
No Yes Treponema pallidum subsp. pallidum str. Mexico A   1 1
No Yes Treponema pallidum subsp. pallidum str. Chicago   1 1
No Yes Treponema pallidum subsp. pallidum DAL-1   1 1
No Yes Treponema pallidum subsp. pallidum str. Nichols   1 1
No Yes Hydrogenobacter thermophilus TK-6   2 2
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 23270   1 1
No Yes Bdellovibrio exovorus JSS   2 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   4 3
No Yes Campylobacter coli 76339   1 1
No Yes Campylobacter coli 15-537360   1 1
No Yes Campylobacter coli CVM N29710   1 1
No Yes Helicobacter pylori BM012S   1 1
No Yes Helicobacter pylori BM012A   1 1
No Yes Helicobacter pylori Aklavik86   1 1
No Yes Helicobacter pylori P12   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   2 2
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   3 2
No Yes Desulfovibrio desulfuricans ND132   1 1
No Yes Geobacter sp. M18   6 6
No Yes Geobacter sulfurreducens PCA   5 5
No Yes Sorangium cellulosum So0157-2   25 24
No Yes Anaeromyxobacter sp. K   7 7
No Yes Anaeromyxobacter dehalogenans 2CP-C   4 4
No Yes Myxococcus stipitatus DSM 14675   9 9
No Yes Burkholderia phenoliruptrix BR3459a   3 3
No Yes Ralstonia solanacearum FQY_4   2 2
No Yes Ralstonia solanacearum Po82   2 2
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   3 3
No Yes Ralstonia solanacearum GMI1000   2 2
No Yes Polynucleobacter necessarius subsp. necessarius STIR1   1 1
No Yes Burkholderia sp. YI23   2 2
No Yes Burkholderia sp. CCGE1003   3 3
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia thailandensis MSMB121   3 3
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia ambifaria MC40-6   2 2
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   3 3
No Yes Burkholderia cepacia GG4   1 1
No Yes Variovorax paradoxus B4   3 3
No Yes Nitrosomonas sp. AL212   2 2
No Yes Phaeobacter gallaeciensis DSM 17395   2 2
No Yes Phaeobacter gallaeciensis DSM 26640   2 2
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Rhodobacter sphaeroides KD131   2 2
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   2 2
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Acetobacter pasteurianus 386B   2 2
No Yes Acetobacter pasteurianus IFO 3283-12   1 1
No Yes Acetobacter pasteurianus IFO 3283-01-42C   1 1
No Yes Acetobacter pasteurianus IFO 3283-32   1 1
No Yes Acetobacter pasteurianus IFO 3283-26   1 1
No Yes Acetobacter pasteurianus IFO 3283-22   1 1
No Yes Acetobacter pasteurianus IFO 3283-07   1 1
No Yes Acetobacter pasteurianus IFO 3283-03   1 1
No Yes Methylobacterium extorquens DM4   2 2
No Yes Methylobacterium extorquens PA1   1 1
No Yes Brucella ceti TE28753-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Sinorhizobium fredii USDA 257   2 2
No Yes Sinorhizobium fredii HH103   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   2 2
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   3 3
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Vibrio parahaemolyticus BB22OP   2 2
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio anguillarum Listonella anguillarum M3   2 1
No Yes Vibrio vulnificus CMCP6   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Idiomarina loihiensis GSL 199   1 1
No Yes Shewanella baltica BA175   2 2
No Yes Shewanella baltica OS678   2 2
No Yes Shewanella baltica OS117   2 2
No Yes Shewanella baltica OS223   2 2
No Yes Shewanella baltica OS195   2 2
No Yes Shewanella baltica OS155   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   1 1
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   4 4
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   5 5
No Yes Alteromonas macleodii str. 'Black Sea 11'   3 3
No Yes Alteromonas macleodii ATCC 27126   2 2
No Yes Alcanivorax dieselolei B5   3 3
No Yes Stenotrophomonas maltophilia D457   2 2
No Yes Stenotrophomonas maltophilia JV3   2 2
No Yes Stenotrophomonas maltophilia R551-3   3 3
No Yes Xanthomonas citri subsp. citri Aw12879   2 2
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   2 2
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   2 2
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   2 2
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   2 2
No Yes Thioalkalivibrio nitratireducens DSM 14787   3 3
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Dickeya dadantii Ech586   1 1
No Yes Candidatus Blochmannia chromaiodes str. 640   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   2 2
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Azotobacter vinelandii CA6   3 3
No Yes Azotobacter vinelandii CA   3 3
No Yes Pseudomonas denitrificans ATCC 13867   3 3
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas stutzeri CCUG 29243   2 2
No Yes Pseudomonas stutzeri DSM 10701   2 2
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   2 2
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   1 1
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida DOT-T1E   2 2
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   2 2
No Yes Pseudomonas protegens CHA0   2 2
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   2 2
No Yes Pseudomonas fluorescens A506   2 2
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Pseudomonas resinovorans NBRC 106553   3 3
No Yes Pseudomonas mendocina NK-01   1 1
No Yes Pseudomonas aeruginosa SCV20265   3 3
No Yes Pseudomonas aeruginosa MTB-1   3 3
No Yes Pseudomonas aeruginosa LES431   3 3
No Yes Pseudomonas aeruginosa RP73   3 3
No Yes Pseudomonas aeruginosa B136-33   2 2
No Yes Pseudomonas aeruginosa PA1R   3 3
No Yes Pseudomonas aeruginosa PA1   3 3
No Yes Pseudomonas aeruginosa DK2   3 3
No Yes Pseudomonas aeruginosa NCGM2.S1   3 3
No Yes Pseudomonas aeruginosa M18   3 3
No Yes Pseudomonas aeruginosa LESB58   3 3
No Yes Pseudomonas aeruginosa PA7   3 3
No Yes Pseudomonas aeruginosa PAO1   3 3
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter calcoaceticus ruh2202   1 1
No Yes Acinetobacter baumannii AB307-0294   1 1
No Yes Acinetobacter baumannii AYE   1 1
No Yes Acinetobacter baumannii AB0057   1 1
No Yes Acinetobacter junii SH205   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   1 1
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   2 2
No Yes Sulfolobus islandicus L.D.8.5   1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus litoralis DSM 5473   2 2
No Yes Halovivax ruber XH-70   2 2
No Yes Natrinema pellirubrum DSM 15624   2 2
No Yes Haloquadratum walsbyi C23   3 3
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes Methanococcus maripaludis X1   2 2
No Yes Methanococcus maripaludis S2   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 39 39
No Yes Homo sapiens (NCBI version) Human 25 25
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 15 14
No Yes Heliconius numata (Incomplete)   6 6
No Yes Loa loa v3.3 (Request) Eye worm 8 8
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 10 10
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 8 8
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Encephalitozoon intestinalis (endoparasite)   1 1
No Yes Encephalitozoon cuniculi (endoparasite)   1 1
No Yes Lotus japonicus (Early assembly)   5 5
No Yes Malus x domestica (Duplicate) Apple 14 14
No Yes Ricinus communis (Early assembly) Castor bean 9 9
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   16 16
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 7 7
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 8 8
No Yes Phoenix dactylifera (Early draft) Date palm 5 5
No Yes Acholeplasma laidlawii PG-8A (duplicate)   1 1
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   2 2
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   1 1
No Yes Homo sapiens 69_37 Human 15 15
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 13 12
No Yes Gorilla gorilla 69_3.1 Western gorilla 15 15
No Yes Pongo abelii 69_2 Sumatran orangutan 15 15
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 15 15
No Yes Macaca mulatta 69_1 Rhesus monkey 14 14
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 14 13
No Yes Otolemur garnettii 69_3 Small-eared galago 15 15
No Yes Microcebus murinus 69_1 Gray mouse lemur 9 9
No Yes Rattus norvegicus 69_3.4 Norway rat 15 15
No Yes Mus musculus 69_38 House mouse 15 14
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 10 10
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 13 13
No Yes Cavia porcellus 69_3 Domestic guinea pig 14 13
No Yes Oryctolagus cuniculus 69_2 Rabbit 15 15
No Yes Ochotona princeps 69 American pika 10 10
No Yes Tupaia belangeri 69 Northern tree shrew 6 6
No Yes Sus scrofa 69_10.2 Pig 13 12
No Yes Bos taurus 69_3.1 Cattle 15 15
No Yes Vicugna pacos 69_1 Alpaca 5 5
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 12 12
No Yes Mustela putorius furo 69_1.0 Domestic ferret 15 15
No Yes Ailuropoda melanoleuca 69_1 Giant panda 15 15
No Yes Canis familiaris 69_3.1 Dog 13 13
No Yes Felis catus 69 Domestic cat 7 7
No Yes Equus caballus 69_2 Horse 13 13
No Yes Myotis lucifugus 69_2.0 Little brown bat 12 12
No Yes Pteropus vampyrus 69_1 Large flying fox 12 12
No Yes Sorex araneus 69_1 European shrew 6 6
No Yes Erinaceus europaeus 69 Western European hedgehog 10 10
No Yes Procavia capensis 69_1 Cape rock hyrax 10 10
No Yes Loxodonta africana 69_3 African savanna elephant 14 14
No Yes Echinops telfairi 69 Small Madagascar hedgehog 10 9
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 5 5
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 6 6
No Yes Macropus eugenii 69_1.0 Tammar wallaby 13 13
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 10 10
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 14 13
No Yes Ornithorhynchus anatinus 69_5 Platypus 16 15
No Yes Petromyzon marinus 69_7.0 Sea lamprey 4 4
No Yes Meleagris gallopavo 69_2 Turkey 10 10
No Yes Gallus gallus 69_2 Chicken 12 12
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 15 13
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 14 13
No Yes Anolis carolinensis 69_2.0 Green anole 12 11
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 11 11
No Yes Latimeria chalumnae 69_1 Coelacanth 11 11
No Yes Gadus morhua 69_1 Atlantic cod 16 16
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 17 16
No Yes Takifugu rubripes 69_4 Torafugu 12 12
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 14 14
No Yes Oryzias latipes 69_1 Japanese medaka 15 14
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 16 15
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 15 15
No Yes Danio rerio 69_9 Zebrafish 18 18
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 10 10
No Yes Drosophila melanogaster 69_5 Fruit fly 10 10
No Yes Caenorhabditis elegans 69_215 Roundworm 12 12
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes Arabidopsis thaliana 10 Thale cress 8 8
No Yes 1_050719N (meta-genome)   23 23
No Yes 1_Upper_euphotic (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   21 21
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   22 22
No Yes 3_Below_base_of_euphotic (meta-genome)   4 4
No Yes 4_050719Q (meta-genome)   52 50
No Yes 4_Deep_abyss (meta-genome)   19 19
No Yes 5_050719P (meta-genome)   48 46
No Yes 5_Below_upper_mesopelagic (meta-genome)   10 10
No Yes 7_Oxygen_minimum_layer (meta-genome)   16 16
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   10 10
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   10 10
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Bath Hot Springs, filamentous community (meta-genome)   4 4
No Yes Bath Hot Springs, planktonic community (meta-genome)   15 15
No Yes Combined (meta-genome)   30 30
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   12 12
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   3 3
No Yes Dump bottom (Dump bottom) (meta-genome)   62 62
No Yes Dump top (Dump top) (meta-genome)   59 59
No Yes Endophytic microbiome from Rice (meta-genome)   7 7
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   18 17
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   21 21
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   7 7
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   31 31
No Yes Fungus garden combined (combined) (meta-genome)   7 7
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   11 11
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   3 3
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   17 17
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   11 11
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   10 10
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   10 10
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   9 9
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   3 3
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   38 38
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   18 18
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   16 15
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   33 33
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   37 36
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   35 34
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   36 35
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   29 28
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   21 21
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   17 17
No Yes Human Gut Community Subject 8 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   8 8
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   57 57
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   70 70
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   253 252
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   77 77
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   11 11
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   59 59
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   80 79
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   31 31
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   93 93
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   46 46
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   11 11
No Yes Mouse Gut Community ob2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   75094 73631
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   142 142
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   4 4
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   2 2
No Yes Protozoadb 2010_08 (Protozoadb)   59 59
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   33 33
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   25 25
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   16 16
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   22 22
No Yes Sludge/US, Jazz Assembly (meta-genome)   10 10
No Yes Sludge/US, Phrap Assembly (meta-genome)   14 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   138 138
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   143 143
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   139 139
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   72 72
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   68 68
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   170 170
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   207 207
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   13 13
No Yes STRING v9.0.5 (STRING)   2319 2254
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   26 26
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   142 142
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   50 50
No Yes Termite Protist Endosymbiont Community (meta-genome)   3 3
No Yes Uniprot 2018_03 genome   40764 39357
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   4 4
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   45 43
No Yes Global Ocean Sampling Expedition (GOS)   1161 1155
No Yes NCBI plasmid sequences (Plasmids)   46 45
No Yes NCBI viral sequences (Viral)   14 14
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   42 42
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   64 64
No Yes TargetDB (Targets)   140 138
No Yes UniProt viral sequences (Viral)   6 6

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