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Sema domain superfamily domain assignments
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Brachypodium distachyon


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Select to display   Genome       Domains   Proteins
No Yes ALL   39331 39331
No Yes Homo sapiens 76_38 Human 138 138
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 27 27
No Yes Gorilla gorilla 76_3.1 Western gorilla 43 43
No Yes Pongo abelii 76_2 Sumatran orangutan 33 33
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 34 34
No Yes Papio anubis 76 Olive baboon 37 36
No Yes Macaca mulatta 76_1 Rhesus monkey 56 56
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 78 78
No Yes Otolemur garnettii 76_3 Small-eared galago 29 29
No Yes Microcebus murinus 76_1 Gray mouse lemur 34 26
No Yes Rattus norvegicus 76_5.0 Norway rat 35 35
No Yes Mus musculus 76_38 House mouse 79 79
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 41 34
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 33 33
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 35 33
No Yes Cavia porcellus 76_3 Domestic guinea pig 32 32
No Yes Oryctolagus cuniculus 76_2 Rabbit 31 31
No Yes Ochotona princeps 76 American pika 39 29
No Yes Tupaia belangeri 76 Northern tree shrew 33 22
No Yes Sus scrofa 76_10.2 Pig 49 49
No Yes Bos taurus 76_3.1 Cattle 31 31
No Yes Ovis aries 76_3.1 Sheep 34 34
No Yes Vicugna pacos 76_1 Alpaca 22 16
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 35 32
No Yes Mustela putorius furo 76_1.0 Domestic ferret 31 31
No Yes Ailuropoda melanoleuca 76_1 Giant panda 38 38
No Yes Canis familiaris 76_3.1 Dog 38 38
No Yes Felis catus 76_6.2 Domestic cat 33 33
No Yes Equus caballus 76_2 Horse 38 38
No Yes Myotis lucifugus 76_2.0 Little brown bat 31 31
No Yes Pteropus vampyrus 76_1 Large flying fox 37 32
No Yes Sorex araneus 76_1 European shrew 34 24
No Yes Erinaceus europaeus 76 Western European hedgehog 39 26
No Yes Procavia capensis 76_1 Cape rock hyrax 38 30
No Yes Loxodonta africana 76_3 African savanna elephant 46 46
No Yes Echinops telfairi 76 Small Madagascar hedgehog 32 27
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 37 36
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 22 16
No Yes Macropus eugenii 76_1.0 Tammar wallaby 39 31
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 39 39
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 32 32
No Yes Ornithorhynchus anatinus 76_5 Platypus 35 34
No Yes Saccoglossus kowalevskii v3.0   30 25
No Yes Petromyzon marinus 76_7.0 Sea lamprey 20 20
No Yes Meleagris gallopavo 76_2 Turkey 29 29
No Yes Gallus gallus 76_4 Chicken 31 31
No Yes Anas platyrhynchos 76_1.0 Mallard 28 27
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 30 30
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 29 28
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 36 36
No Yes Anolis carolinensis 76_2.0 Green anole 34 34
No Yes Xenopus laevis African clawed frog 31 31
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 37 37
No Yes Latimeria chalumnae 76_1 Coelacanth 39 39
No Yes Lepisosteus oculatus 76 Spotted gar 48 48
No Yes Gadus morhua 76_1 Atlantic cod 64 55
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 65 65
No Yes Takifugu rubripes 76_4 Torafugu 225 225
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 54 54
No Yes Oryzias latipes 76_1 Japanese medaka 56 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 52 52
No Yes Poecilia formosa 76 Amazon molly 60 59
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 75 73
No Yes Astyanax mexicanus 76 Mexican tetra 57 57
No Yes Danio rerio 76_9 Zebrafish 84 84
No Yes Oikopleura dioica   10 10
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 76 Vase tunicate 9 9
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 47 46
No Yes Adineta vaga   8 8
No Yes Octopus bimaculoides 280   6 6
No Yes Crassostrea gigas 22 Pacific oyster 15 13
No Yes Lottia gigantea Owl limpet 9 9
No Yes Helobdella robusta   17 15
No Yes Capitella sp. I   9 9
No Yes Danaus plexippus OGS1.0 Monarch butterfly 8 8
No Yes Heliconius melpomene Postman butterfly 8 8
No Yes Bombyx mori Domestic silkworm 9 9
No Yes Nasonia vitripennis Jewel wasp 7 7
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 25 25
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 7 7
No Yes Linepithema humile v1.1 Argentine ant 11 11
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 12 12
No Yes Solenopsis invicta v.2.2.3 Red fire ant 8 8
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 7 7
No Yes Atta cephalotes v1.1   12 12
No Yes Camponotus floridanus v3.3 Florida carpenter ant 9 9
No Yes Lucilia cuprina Australian sheep blowfly 5 5
No Yes Drosophila grimshawi 1.3   8 8
No Yes Drosophila willistoni 1.3   7 7
No Yes Drosophila pseudoobscura 2.13   7 7
No Yes Drosophila persimilis 1.3   7 7
No Yes Drosophila suzukii   9 7
No Yes Drosophila yakuba 1.3   7 7
No Yes Drosophila simulans 1.3   7 7
No Yes Drosophila sechellia 1.3   7 7
No Yes Drosophila melanogaster 76_5 Fruit fly 28 28
No Yes Drosophila erecta 1.3   7 7
No Yes Drosophila ananassae 1.3   7 7
No Yes Drosophila virilis 1.2   7 7
No Yes Drosophila mojavensis 1.3   7 7
No Yes Megaselia scalaris 22   7 6
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 8 8
No Yes Culex pipiens quinquefasciatus Southern house mosquito 7 6
No Yes Anopheles darlingi 22 American malaria mosquito 9 8
No Yes Anopheles gambiae 49_3j African malaria mosquito 8 8
No Yes Tribolium castaneum 3.0 Red flour beetle 7 7
No Yes Pediculus humanus corporis (Early assembly) Human body louse 7 7
No Yes Acyrthosiphon pisum Pea aphid 6 6
No Yes Rhodnius prolixus 22   5 5
No Yes Daphnia pulex Common water flea 7 7
No Yes Strigamia maritima 22   10 10
No Yes Sarcoptes scabiei   8 8
No Yes Tetranychus urticae Two-spotted spider mite 9 9
No Yes Ixodes scapularis (Preliminary) Black-legged tick 10 9
No Yes Pristionchus pacificus   6 6
No Yes Meloidogyne incognita Southern root-knot nematode 4 4
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   7 7
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 6 6
No Yes Caenorhabditis japonica   7 7
No Yes Caenorhabditis brenneri   9 9
No Yes Caenorhabditis remanei   6 6
No Yes Caenorhabditis elegans 76_235 Roundworm 14 14
No Yes Caenorhabditis briggsae 2   6 6
No Yes Trichinella spiralis 22   9 9
No Yes Hymenolepis microstoma   2 2
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 3 2
No Yes Schistosoma mansoni   7 6
No Yes Mnemiopsis leidyi Sea walnut 12 11
No Yes Acropora digitifera v1.0   8 8
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 2
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   16 15
No Yes Trichoplax adhaerens   4 4
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 41 41
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 21 21
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 8 8
No Yes Ascaris suum Victoria/Ghent Pig roundworm 9 9
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 10 10
No Yes Homo sapiens 75_37 (old version GRC) Human 151 151
No Yes Homo sapiens (NCBI version) Human 54 54
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 31 31
No Yes Heliconius numata (Incomplete)   3 3
No Yes Loa loa v3.3 (Request) Eye worm 7 7
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 8 8
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Homo sapiens 69_37 Human 31 31
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 27 27
No Yes Gorilla gorilla 69_3.1 Western gorilla 31 31
No Yes Pongo abelii 69_2 Sumatran orangutan 32 32
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 32 32
No Yes Macaca mulatta 69_1 Rhesus monkey 31 31
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 34 34
No Yes Otolemur garnettii 69_3 Small-eared galago 29 29
No Yes Microcebus murinus 69_1 Gray mouse lemur 34 26
No Yes Rattus norvegicus 69_3.4 Norway rat 31 31
No Yes Mus musculus 69_38 House mouse 31 31
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 40 33
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 32 32
No Yes Cavia porcellus 69_3 Domestic guinea pig 31 31
No Yes Oryctolagus cuniculus 69_2 Rabbit 28 28
No Yes Ochotona princeps 69 American pika 39 29
No Yes Tupaia belangeri 69 Northern tree shrew 33 22
No Yes Sus scrofa 69_10.2 Pig 36 36
No Yes Bos taurus 69_3.1 Cattle 30 30
No Yes Vicugna pacos 69_1 Alpaca 21 15
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 34 31
No Yes Mustela putorius furo 69_1.0 Domestic ferret 31 31
No Yes Ailuropoda melanoleuca 69_1 Giant panda 30 30
No Yes Canis familiaris 69_3.1 Dog 31 31
No Yes Felis catus 69 Domestic cat 40 29
No Yes Equus caballus 69_2 Horse 31 31
No Yes Myotis lucifugus 69_2.0 Little brown bat 31 31
No Yes Pteropus vampyrus 69_1 Large flying fox 35 31
No Yes Sorex araneus 69_1 European shrew 34 24
No Yes Erinaceus europaeus 69 Western European hedgehog 39 26
No Yes Procavia capensis 69_1 Cape rock hyrax 37 29
No Yes Loxodonta africana 69_3 African savanna elephant 31 31
No Yes Echinops telfairi 69 Small Madagascar hedgehog 32 27
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 31 23
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 22 16
No Yes Macropus eugenii 69_1.0 Tammar wallaby 38 30
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 28 28
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 32 32
No Yes Ornithorhynchus anatinus 69_5 Platypus 32 31
No Yes Petromyzon marinus 69_7.0 Sea lamprey 19 19
No Yes Meleagris gallopavo 69_2 Turkey 27 27
No Yes Gallus gallus 69_2 Chicken 28 28
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 30 30
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 25 25
No Yes Anolis carolinensis 69_2.0 Green anole 33 33
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 28 28
No Yes Latimeria chalumnae 69_1 Coelacanth 33 33
No Yes Gadus morhua 69_1 Atlantic cod 56 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 50 50
No Yes Takifugu rubripes 69_4 Torafugu 49 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 46 46
No Yes Oryzias latipes 69_1 Japanese medaka 46 46
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 52 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 56 54
No Yes Danio rerio 69_9 Zebrafish 52 52
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 69 Vase tunicate 9 9
No Yes Drosophila melanogaster 69_5 Fruit fly 7 7
No Yes Caenorhabditis elegans 69_215 Roundworm 6 6
No Yes NCBI 2017_08 genome   19264 19139
No Yes STRING v9.0.5 (STRING)   1052 1026
No Yes Uniprot 2018_03 genome   10052 9882
No Yes NCBI viral sequences (Viral)   20 20
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   64 64
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   103 103
No Yes TargetDB (Targets)   61 61
No Yes UniProt viral sequences (Viral)   71 71

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