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DNA-binding pseudobarrel domain superfamily domain assignments
in
Actinidia chinensis Hongyang

Assignment details

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Actinidia chinensis Hongyang has 150 significant domains in 115 proteins.

     

Sequence ID   Evalue   Region   Family  
Achn001011   1.43e-26   182-280   B3 DNA binding domain  
  4.12e-19   21-100   B3 DNA binding domain  
Achn006251   9.22e-24   14-110   B3 DNA binding domain  
Achn006571   7.26e-21   327-438   B3 DNA binding domain  
  8.04e-18   23-114   B3 DNA binding domain  
Achn006581   3.14e-22   13-111   B3 DNA binding domain  
  0.00000000785   300-360   B3 DNA binding domain  
Achn013951   9.22e-24   137-236   B3 DNA binding domain  
  3.92e-18   255-342   B3 DNA binding domain  
  9.02e-16   7-90   B3 DNA binding domain  
Achn014771   1.77e-19   3-78   B3 DNA binding domain  
  0.000000000165   227-301   B3 DNA binding domain  
Achn017391   6.67e-41   156-289   B3 DNA binding domain  
Achn023421   1.57e-42   124-263   B3 DNA binding domain  
Achn024331   2.35e-37   125-263   B3 DNA binding domain  
Achn031951   1.7e-29   129-237   B3 DNA binding domain  
Achn034231   0.00000000353   53-89   B3 DNA binding domain  
Achn034241   0.00000000000068   3-75   B3 DNA binding domain  
Achn039351   5.36e-20   91-192   B3 DNA binding domain  
Achn043361   1.57e-41   150-258   B3 DNA binding domain  
Achn057311   0.0000000412   257-376   B3 DNA binding domain  
Achn060371   4.32e-18   57-139   B3 DNA binding domain  
Achn060451   1.44e-43   149-274   B3 DNA binding domain  
Achn066701   5.1e-19   59-148   B3 DNA binding domain  
Achn069381   0.0000000000209   193-291   B3 DNA binding domain  
  0.0000000000419   67-159   B3 DNA binding domain  
Achn069391   0.00000000412   69-144   B3 DNA binding domain  
Achn069911   0.0000000000628   487-593   B3 DNA binding domain  
Achn070021   0.00000451   68-158   B3 DNA binding domain  
Achn073331   4.58e-34   148-277   B3 DNA binding domain  
Achn074591   4.45e-25   116-186   B3 DNA binding domain  
Achn091181   4.71e-18   213-297   B3 DNA binding domain  
Achn095921   1.57e-46   145-287   B3 DNA binding domain  
Achn096761   0.000000000275   19-99   B3 DNA binding domain  
Achn100001   0.0000000000122   6-87   B3 DNA binding domain  
Achn107011   9.16e-30   186-285   B3 DNA binding domain  
Achn107441   0.00000000000204   35-146   B3 DNA binding domain  
Achn107451   0.0000000000667   35-144   B3 DNA binding domain  
Achn107461   0.000000000365   35-143   B3 DNA binding domain  
Achn107471   0.0000000000102   35-145   B3 DNA binding domain  
Achn107651   9.55e-30   90-160   B3 DNA binding domain  
Achn108891   0.00000000107   106-150   B3 DNA binding domain  
Achn112031   0.000000000183   295-372   B3 DNA binding domain  
Achn116231   2.35e-40   134-266   B3 DNA binding domain  
Achn127421   0.000000000000147   532-605   B3 DNA binding domain  
Achn127441   0.0000000000186   243-329   B3 DNA binding domain  
  0.0000000275   66-134   B3 DNA binding domain  
  0.0196   147-177   B3 DNA binding domain  
Achn128001   0.0000000122   241-357   B3 DNA binding domain  
Achn128011   0.00000000942   209-325   B3 DNA binding domain  
Achn128021   0.000033   25-99   B3 DNA binding domain  
Achn129501   0.0000000000432   118-219   B3 DNA binding domain  
  0.000000000392   239-316   B3 DNA binding domain  
Achn131561   0.0000000000000018   142-220   B3 DNA binding domain  
Achn131801   5.69e-24   500-599   B3 DNA binding domain  
  1.55e-23   276-378   B3 DNA binding domain  
  3.14e-20   50-132   B3 DNA binding domain  
Achn134461   0.00000412   107-193   B3 DNA binding domain  
  0.0451   26-84   B3 DNA binding domain  
Achn146201   0.000000000000196   321-428   B3 DNA binding domain  
  0.000000000746   114-221   B3 DNA binding domain  
Achn146211   0.0000000000196   116-223   B3 DNA binding domain  
Achn146221   0.0000000000051   118-216   B3 DNA binding domain  
Achn150051   6.47e-17   88-185   B3 DNA binding domain  
Achn154151   0.0000000000301   78-142   B3 DNA binding domain  
Achn167981   5.62e-44   104-245   B3 DNA binding domain  
Achn170441   1.96e-29   188-277   B3 DNA binding domain  
Achn177821   0.0000451   305-340   B3 DNA binding domain  
Achn186621   1.96e-47   17-159   B3 DNA binding domain  
Achn186981   0.0000255   11-48   B3 DNA binding domain  
Achn187221   0.0000169   11-50   B3 DNA binding domain  
Achn191201   2.55e-17   58-135   B3 DNA binding domain  
Achn191261   7.19e-18   230-344   B3 DNA binding domain  
Achn200831   1.63e-21   17-104   B3 DNA binding domain  
  0.00000000000000169   292-372   B3 DNA binding domain  
Achn208531   1.53e-22   235-332   B3 DNA binding domain  
Achn210521   4.32e-20   1-82   B3 DNA binding domain  
  5.49e-20   174-261   B3 DNA binding domain  
Achn214171   9.68e-18   59-173   B3 DNA binding domain  
Achn222401   0.00000863   4-45   B3 DNA binding domain  
Achn222421   0.00000000000889   88-179   B3 DNA binding domain  
  0.00000000451   225-330   B3 DNA binding domain  
Achn222431   0.000000000000883   71-160   B3 DNA binding domain  
  0.000000159   209-300   B3 DNA binding domain  
Achn227891   0.00000726   545-639   B3 DNA binding domain  
  0.000114   668-776   B3 DNA binding domain  
Achn227901   0.00000000000746   190-288   B3 DNA binding domain  
  0.000000000275   505-598   B3 DNA binding domain  
  0.0000000589   397-480   B3 DNA binding domain  
  0.000145   129-186   B3 DNA binding domain  
Achn231151   6.87e-25   514-583   B3 DNA binding domain  
Achn231601   0.00000000171   15-121   B3 DNA binding domain  
  0.0000000412   143-244   B3 DNA binding domain  
  0.0000145   266-363   B3 DNA binding domain  
Achn232391   2.16e-18   4-96   B3 DNA binding domain  
Achn232401   8.04e-24   283-385   B3 DNA binding domain  
  3.92e-21   3-95   B3 DNA binding domain  
Achn232411   4.9e-22   68-163   B3 DNA binding domain  
  9.81e-21   418-505   B3 DNA binding domain  
  0.00000589   506-542   B3 DNA binding domain  
Achn239951   0.00000000000471   59-139   B3 DNA binding domain  
Achn240341   1.31e-33   99-219   B3 DNA binding domain  
Achn247961   5.62e-28   116-223   B3 DNA binding domain  
Achn251751   3.01e-30   188-277   B3 DNA binding domain  
Achn252961   4.97e-27   164-263   B3 DNA binding domain  
Achn254831   0.00000000000000183   231-325   B3 DNA binding domain  
Achn255601   1.57e-49   37-182   B3 DNA binding domain  
Achn261561   9.68e-27   148-247   B3 DNA binding domain  
Achn262881   2.62e-27   124-234   B3 DNA binding domain  
Achn266101   5.69e-18   103-191   B3 DNA binding domain  
Achn271111   7.85e-27   195-297   B3 DNA binding domain  
Achn273621   5.69e-24   271-368   B3 DNA binding domain  
Achn273801   8.37e-38   790-930   B3 DNA binding domain  
Achn274221   4.9e-18   1-81   B3 DNA binding domain  
  0.00000000000196   385-451   B3 DNA binding domain  
Achn280471   2.16e-20   3-78   B3 DNA binding domain  
  3.14e-16   220-315   B3 DNA binding domain  
Achn281921   1.44e-29   172-281   B3 DNA binding domain  
Achn288691   0.0000000235   143-244   B3 DNA binding domain  
  0.0000000353   15-121   B3 DNA binding domain  
  0.0000216   266-363   B3 DNA binding domain  
Achn295121   7.32e-49   92-237   B3 DNA binding domain  
Achn301581   7.32e-31   52-160   B3 DNA binding domain  
Achn302791   0.00000445   10-46   B3 DNA binding domain  
Achn304511   0.0000112   61-158   B3 DNA binding domain  
Achn314161   1.14e-21   316-419   B3 DNA binding domain  
Achn342201   0.0000000000000011   235-329   B3 DNA binding domain  
Achn344691   0.00000000837   129-173   B3 DNA binding domain  
Achn345181   0.000000000112   42-118   B3 DNA binding domain  
Achn346141   0.000000000249   111-174   B3 DNA binding domain  
Achn348251   0.00000373   11-115   B3 DNA binding domain  
Achn348711   1.22e-40   133-266   B3 DNA binding domain  
Achn351531   6.02e-17   82-148   B3 DNA binding domain  
Achn361971   1.44e-48   92-237   B3 DNA binding domain  
Achn362591   0.00000000353   53-89   B3 DNA binding domain  
Achn371311   1.83e-34   32-191   B3 DNA binding domain  
Achn372791   0.0000000000000112   18-92   B3 DNA binding domain  
Achn372901   1.65e-21   322-432   B3 DNA binding domain  
  9.42e-18   33-108   B3 DNA binding domain  
Achn375771   0.00000000000000569   4-71   B3 DNA binding domain  
  0.00000000000549   401-458   B3 DNA binding domain  
Achn376501   1.29e-25   63-165   B3 DNA binding domain  
Achn376621   0.00000000000589   82-174   B3 DNA binding domain  
  0.000000000051   198-292   B3 DNA binding domain  
Achn376631   0.000000000049   713-795   B3 DNA binding domain  
  0.0000000000942   488-576   B3 DNA binding domain  
  0.000000000432   372-464   B3 DNA binding domain  
  0.00000116   131-230   B3 DNA binding domain  
  0.000628   29-96   B3 DNA binding domain  
Achn376661   0.0000000000222   183-276   B3 DNA binding domain  
  0.0000000000471   299-387   B3 DNA binding domain  
Achn384621   0.000000000000001   125-192   B3 DNA binding domain  
Achn384641   1.02e-22   6-103   B3 DNA binding domain  
  9.22e-18   174-274   B3 DNA binding domain  
Achn389021   0.00000000000000589   589-667   B3 DNA binding domain  
 
Weak hits:
Achn025581   0.0149   1-22   B3 DNA binding domain  
Achn058061   0.00255   20-51   B3 DNA binding domain  
Achn090151   0.000126   200-320   B3 DNA binding domain  
Achn128031   0.0029   56-152   B3 DNA binding domain  
Achn128281   0.00745   90-149   B3 DNA binding domain  
Achn146021   0.033   88-148   B3 DNA binding domain  
Achn160391   0.000204   189-312   B3 DNA binding domain  
Achn160401   0.00149   198-321   B3 DNA binding domain  
Achn165201   0.000216   311-417   B3 DNA binding domain  
Achn165461   0.000204   301-407   B3 DNA binding domain  
Achn304501   0.00628   54-149   B3 DNA binding domain  
Achn316671   0.0902   117-165   B3 DNA binding domain  
Achn335481   0.0122   57-127   B3 DNA binding domain  
Achn367781   0.033   47-110   B3 DNA binding domain  
Achn377321   0.000589   930-1000   B3 DNA binding domain  
  0.00384   1053-1146   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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