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DNA-binding pseudobarrel domain superfamily domain assignments
in
Brassica rapa Chiifu-401 1.2

Assignment details

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Brassica rapa Chiifu-401 1.2 has 346 significant domains in 211 proteins.

     

Sequence ID   Evalue   Region   Family  
Bra000148   0.000000000000179   91-188   B3 DNA binding domain  
Bra000434   6.54e-30   30-123   B3 DNA binding domain  
Bra000545   3.92e-21   333-434   B3 DNA binding domain  
  3.14e-20   105-206   B3 DNA binding domain  
  1.77e-17   231-327   B3 DNA binding domain  
Bra000563   6.47e-23   716-811   B3 DNA binding domain  
  7.26e-22   558-658   B3 DNA binding domain  
  8.63e-22   278-373   B3 DNA binding domain  
  2.16e-20   121-217   B3 DNA binding domain  
  5.3e-18   851-939   B3 DNA binding domain  
Bra000564   8.44e-23   329-427   B3 DNA binding domain  
  1.55e-16   643-743   B3 DNA binding domain  
  4.9e-16   485-572   B3 DNA binding domain  
  0.00000000000000167   153-238   B3 DNA binding domain  
  0.0000000000179   10-97   B3 DNA binding domain  
  0.00000373   771-834   B3 DNA binding domain  
Bra001387   6.28e-20   59-161   B3 DNA binding domain  
  0.000000000000235   168-256   B3 DNA binding domain  
  0.0000000000196   4-50   B3 DNA binding domain  
Bra001411   4.45e-31   28-142   B3 DNA binding domain  
Bra001647   6.28e-18   15-118   B3 DNA binding domain  
  0.0000000000000196   183-274   B3 DNA binding domain  
Bra001648   3.53e-17   14-119   B3 DNA binding domain  
  5.69e-17   196-287   B3 DNA binding domain  
Bra001690   0.00000000000186   14-103   B3 DNA binding domain  
  0.0000589   111-171   B3 DNA binding domain  
Bra001729   1.16e-21   473-574   B3 DNA binding domain  
  7.06e-18   265-355   B3 DNA binding domain  
Bra002132   3.53e-19   223-312   B3 DNA binding domain  
  7.85e-17   14-129   B3 DNA binding domain  
Bra002327   2.75e-42   117-256   B3 DNA binding domain  
Bra002479   4.05e-42   159-281   B3 DNA binding domain  
Bra002509   1.02e-18   7-106   B3 DNA binding domain  
  0.0000000000432   114-211   B3 DNA binding domain  
Bra003130   1.29e-25   7-106   B3 DNA binding domain  
  0.00000000216   186-268   B3 DNA binding domain  
Bra003482   3.92e-33   18-127   B3 DNA binding domain  
Bra003665   7.85e-29   116-230   B3 DNA binding domain  
Bra004125   2.35e-48   113-256   B3 DNA binding domain  
  0.0137   748-777   Type II restriction endonuclease effector domain  
Bra004501   6.8e-30   33-128   B3 DNA binding domain  
Bra004530   1.96e-39   100-245   B3 DNA binding domain  
Bra004619   7.65e-19   5-104   B3 DNA binding domain  
  4.9e-17   126-219   B3 DNA binding domain  
Bra004985   0.000000000000373   92-197   B3 DNA binding domain  
Bra005015   0.000000000133   154-252   B3 DNA binding domain  
Bra005016   0.0000000102   163-250   B3 DNA binding domain  
Bra005301   1.28e-30   36-144   B3 DNA binding domain  
Bra005465   4.97e-42   147-272   B3 DNA binding domain  
Bra005477   0.000000471   60-169   B3 DNA binding domain  
Bra005636   0.00000000589   68-173   B3 DNA binding domain  
Bra005646   0.00000000053   139-244   B3 DNA binding domain  
Bra005886   2.35e-29   44-155   B3 DNA binding domain  
Bra006989   2.75e-23   10-106   B3 DNA binding domain  
  0.00000000432   170-249   B3 DNA binding domain  
Bra007632   6.67e-39   112-256   B3 DNA binding domain  
Bra007646   2.49e-32   20-128   B3 DNA binding domain  
Bra007835   6.47e-22   497-585   B3 DNA binding domain  
  1.73e-19   377-473   B3 DNA binding domain  
  4.12e-19   137-233   B3 DNA binding domain  
  2.35e-17   625-708   B3 DNA binding domain  
  8.24e-16   18-103   B3 DNA binding domain  
  0.000000000000902   248-315   B3 DNA binding domain  
Bra007836   5.89e-22   139-241   B3 DNA binding domain  
  1.59e-20   783-876   B3 DNA binding domain  
  3.73e-18   646-748   B3 DNA binding domain  
  6.47e-17   293-378   B3 DNA binding domain  
  1.55e-16   423-512   B3 DNA binding domain  
  0.0000000000000196   938-1014   B3 DNA binding domain  
  0.000000000000235   541-626   B3 DNA binding domain  
  0.00000000000294   8-97   B3 DNA binding domain  
  0.0000647   1016-1050   B3 DNA binding domain  
Bra007840   8.63e-21   119-220   B3 DNA binding domain  
  7.46e-19   441-531   B3 DNA binding domain  
  7.46e-16   288-374   B3 DNA binding domain  
  0.000000000000549   558-631   B3 DNA binding domain  
  0.00000216   9-75   B3 DNA binding domain  
Bra008374   0.000000000000373   4-108   B3 DNA binding domain  
Bra008552   6.41e-30   32-120   B3 DNA binding domain  
Bra009171   0.00000000000157   40-104   B3 DNA binding domain  
Bra009842   0.0000000000000255   13-112   B3 DNA binding domain  
  0.000000126   169-256   B3 DNA binding domain  
Bra010048   6.93e-40   156-289   B3 DNA binding domain  
Bra010225   9.22e-21   575-678   B3 DNA binding domain  
  1.08e-20   9-109   B3 DNA binding domain  
  1.18e-19   704-801   B3 DNA binding domain  
  2.75e-17   153-243   B3 DNA binding domain  
  2.75e-16   470-562   B3 DNA binding domain  
  0.00000000000000255   282-385   B3 DNA binding domain  
Bra010228   4.71e-20   289-391   B3 DNA binding domain  
  3.92e-19   158-253   B3 DNA binding domain  
  0.0000000000049   27-91   B3 DNA binding domain  
Bra010776   3.14e-48   115-260   B3 DNA binding domain  
Bra011002   8.76e-33   189-293   B3 DNA binding domain  
Bra011086   1.04e-21   4-96   B3 DNA binding domain  
  0.000000135   201-286   B3 DNA binding domain  
Bra011110   3.73e-19   13-92   B3 DNA binding domain  
  0.0000000549   241-324   B3 DNA binding domain  
Bra011162   4.71e-30   113-221   B3 DNA binding domain  
Bra011285   3.53e-19   182-280   B3 DNA binding domain  
  4.12e-17   643-740   B3 DNA binding domain  
  0.00000000000000863   783-876   B3 DNA binding domain  
  0.000000000000373   315-408   B3 DNA binding domain  
  0.00000000192   529-588   B3 DNA binding domain  
  0.0000000216   32-91   B3 DNA binding domain  
Bra011286   1.82e-16   110-210   B3 DNA binding domain  
  0.000000000000255   242-338   B3 DNA binding domain  
  0.00000000000153   6-98   B3 DNA binding domain  
Bra011287   0.0000000000334   10-95   B3 DNA binding domain  
Bra011288   5.1e-20   177-275   B3 DNA binding domain  
  0.0000000000000373   10-103   B3 DNA binding domain  
  0.00000000235   311-403   B3 DNA binding domain  
Bra011289   4.9e-16   105-206   B3 DNA binding domain  
  8.24e-16   4-80   B3 DNA binding domain  
Bra011955   2.35e-29   105-215   B3 DNA binding domain  
Bra012121   2.55e-22   20-114   B3 DNA binding domain  
  0.00000000000000451   207-310   B3 DNA binding domain  
Bra012190   2.22e-45   146-285   B3 DNA binding domain  
Bra012445   5.69e-18   297-398   B3 DNA binding domain  
  2.55e-17   532-634   B3 DNA binding domain  
  2.55e-16   153-250   B3 DNA binding domain  
  0.00000000000000412   416-515   B3 DNA binding domain  
  0.0000000000000451   24-108   B3 DNA binding domain  
Bra012500   1.88e-17   182-272   B3 DNA binding domain  
  0.000000000000051   101-160   B3 DNA binding domain  
Bra012540   0.00000000000124   4-107   B3 DNA binding domain  
Bra012545   1.86e-19   4-104   B3 DNA binding domain  
  4.9e-17   126-219   B3 DNA binding domain  
Bra012547   4.32e-19   83-183   B3 DNA binding domain  
  8.83e-17   205-298   B3 DNA binding domain  
Bra013248   8.83e-22   568-662   B3 DNA binding domain  
Bra013535   4.71e-20   314-416   B3 DNA binding domain  
Bra013748   4.84e-39   97-235   B3 DNA binding domain  
Bra014191   5.69e-16   25-122   B3 DNA binding domain  
Bra014192   1.77e-20   121-208   B3 DNA binding domain  
Bra014282   7.06e-28   168-263   B3 DNA binding domain  
Bra014415   5.1e-31   38-148   B3 DNA binding domain  
Bra014419   7.46e-40   112-256   B3 DNA binding domain  
Bra015374   9.29e-22   35-160   B3 DNA binding domain  
Bra015425   8.24e-19   133-258   B3 DNA binding domain  
Bra015465   0.00000000000000294   91-218   B3 DNA binding domain  
Bra015651   3.01e-28   105-217   B3 DNA binding domain  
Bra016395   0.000000000196   111-170   B3 DNA binding domain  
Bra016492   1.02e-45   136-275   B3 DNA binding domain  
Bra016517   1.03e-36   116-245   B3 DNA binding domain  
Bra016772   5.69e-20   3-104   B3 DNA binding domain  
  0.00000000000000235   131-222   B3 DNA binding domain  
Bra017028   0.0000000000000124   130-235   B3 DNA binding domain  
Bra017262   1.57e-30   34-142   B3 DNA binding domain  
Bra017362   2.75e-16   106-173   B3 DNA binding domain  
Bra017648   2.75e-24   4-103   B3 DNA binding domain  
Bra017649   0.0000000000112   4-49   B3 DNA binding domain  
Bra017651   1.16e-23   4-103   B3 DNA binding domain  
  0.000000255   251-336   B3 DNA binding domain  
Bra017692   8.44e-22   6-88   B3 DNA binding domain  
  0.00000149   162-241   B3 DNA binding domain  
Bra018098   1.05e-16   90-145   B3 DNA binding domain  
Bra018124   1.96e-27   110-213   B3 DNA binding domain  
Bra018313   1.83e-20   291-389   B3 DNA binding domain  
Bra018430   2.16e-19   187-281   B3 DNA binding domain  
  4.32e-16   21-122   B3 DNA binding domain  
Bra018530   8.83e-22   4-105   B3 DNA binding domain  
  0.0000165   353-431   B3 DNA binding domain  
Bra018833   0.0000000000981   19-123   B3 DNA binding domain  
Bra018854   3.14e-26   170-264   B3 DNA binding domain  
Bra018868   7.06e-27   169-267   B3 DNA binding domain  
Bra018869   1.83e-26   168-264   B3 DNA binding domain  
Bra018894   1.23e-27   173-280   B3 DNA binding domain  
Bra019255   1.22e-38   102-238   B3 DNA binding domain  
Bra019821   6.54e-32   183-291   B3 DNA binding domain  
Bra020125   1.44e-42   117-256   B3 DNA binding domain  
Bra020417   7.06e-18   5-102   B3 DNA binding domain  
  0.0000275   194-277   B3 DNA binding domain  
Bra020418   0.000000392   52-136   B3 DNA binding domain  
Bra020501   0.000000000000116   16-114   B3 DNA binding domain  
  0.0000275   171-258   B3 DNA binding domain  
Bra020613   8.24e-17   86-179   B3 DNA binding domain  
  0.00000000000175   20-64   B3 DNA binding domain  
Bra020873   6.08e-18   408-508   B3 DNA binding domain  
Bra020874   6.47e-19   64-164   B3 DNA binding domain  
  7.85e-17   186-279   B3 DNA binding domain  
Bra021270   1.82e-20   4-109   B3 DNA binding domain  
  0.0000000000000184   142-214   B3 DNA binding domain  
Bra021284   0.000000000000049   31-130   B3 DNA binding domain  
  0.000000373   182-275   B3 DNA binding domain  
Bra021635   6.93e-20   283-385   B3 DNA binding domain  
Bra021662   0.000000000000255   122-241   B3 DNA binding domain  
Bra021704   0.00000392   28-140   B3 DNA binding domain  
Bra021717   0.000000000000765   156-286   B3 DNA binding domain  
Bra021729   0.000000275   67-161   B3 DNA binding domain  
Bra021731   0.000000000000183   64-183   B3 DNA binding domain  
Bra021738   0.000000000153   160-271   B3 DNA binding domain  
Bra021753   0.000000294   165-219   B3 DNA binding domain  
Bra021885   1.57e-42   147-284   B3 DNA binding domain  
Bra021943   3.14e-17   14-118   B3 DNA binding domain  
  0.000000000049   187-280   B3 DNA binding domain  
Bra022189   4.51e-17   175-266   B3 DNA binding domain  
  0.000000000000334   8-79   B3 DNA binding domain  
Bra022263   0.0000000000000824   16-117   B3 DNA binding domain  
  0.0000000049   162-249   B3 DNA binding domain  
  0.00000000942   290-375   B3 DNA binding domain  
Bra022287   8.5e-20   84-184   B3 DNA binding domain  
  7.46e-19   229-319   B3 DNA binding domain  
Bra022374   3.53e-21   23-124   B3 DNA binding domain  
Bra022376   7.65e-22   265-365   B3 DNA binding domain  
  3.34e-21   3-98   B3 DNA binding domain  
Bra022801   2.62e-19   287-385   B3 DNA binding domain  
Bra022855   2.55e-20   166-264   B3 DNA binding domain  
  5.49e-16   53-139   B3 DNA binding domain  
Bra022951   0.000000000785   100-212   B3 DNA binding domain  
Bra023229   0.0000000000000549   197-318   B3 DNA binding domain  
Bra023652   1.96e-20   15-118   B3 DNA binding domain  
Bra023733   9.81e-16   45-141   B3 DNA binding domain  
Bra023968   5.49e-20   280-383   B3 DNA binding domain  
Bra023988   1.31e-22   15-115   B3 DNA binding domain  
  1.39e-19   147-240   B3 DNA binding domain  
  6.47e-19   266-368   B3 DNA binding domain  
Bra023989   0.0000746   3-71   B3 DNA binding domain  
Bra023990   8.44e-21   9-109   B3 DNA binding domain  
  0.00000000000000126   133-241   B3 DNA binding domain  
Bra023991   7.46e-20   95-196   B3 DNA binding domain  
  0.000000667   216-313   B3 DNA binding domain  
  0.00175   9-78   B3 DNA binding domain  
Bra024109   1.01e-29   147-258   B3 DNA binding domain  
Bra024391   8.24e-17   126-219   B3 DNA binding domain  
  0.00000000000000135   4-104   B3 DNA binding domain  
Bra024695   3.73e-19   10-112   B3 DNA binding domain  
  1.31e-17   151-251   B3 DNA binding domain  
  1.82e-17   272-362   B3 DNA binding domain  
Bra024696   2.35e-21   151-251   B3 DNA binding domain  
  1.65e-18   8-106   B3 DNA binding domain  
  3.73e-17   281-366   B3 DNA binding domain  
  0.00000000000000196   428-527   B3 DNA binding domain  
Bra024697   7.06e-18   14-117   B3 DNA binding domain  
  2.35e-16   160-258   B3 DNA binding domain  
  0.00000000000000147   440-540   B3 DNA binding domain  
  0.0000000000000902   295-372   B3 DNA binding domain  
Bra024735   4.58e-31   194-300   B3 DNA binding domain  
Bra025159   1.57e-18   189-272   B3 DNA binding domain  
Bra025229   0.00000000000353   74-150   B3 DNA binding domain  
Bra025301   0.00000000000589   53-109   B3 DNA binding domain  
Bra025474   4.9e-19   89-179   B3 DNA binding domain  
  0.00000000012   4-77   B3 DNA binding domain  
Bra025720   3.79e-44   116-255   B3 DNA binding domain  
Bra025775   4.71e-46   142-281   B3 DNA binding domain  
Bra025779   9.55e-17   90-145   B3 DNA binding domain  
Bra025867   6.08e-20   3-104   B3 DNA binding domain  
  2.35e-17   126-220   B3 DNA binding domain  
Bra026034   0.000000000216   2-47   B3 DNA binding domain  
Bra026509   7.72e-30   191-296   B3 DNA binding domain  
Bra026917   2.88e-31   178-288   B3 DNA binding domain  
Bra027159   5.49e-19   166-284   B3 DNA binding domain  
Bra027360   2.75e-18   110-201   B3 DNA binding domain  
  0.000000000451   11-69   B3 DNA binding domain  
Bra027944   2.75e-28   111-221   B3 DNA binding domain  
Bra028110   1.44e-47   112-255   B3 DNA binding domain  
Bra029293   4.58e-35   23-122   B3 DNA binding domain  
Bra029466   0.0000251   28-129   B3 DNA binding domain  
Bra029538   0.00000000687   76-172   B3 DNA binding domain  
Bra029892   9.94e-20   142-245   B3 DNA binding domain  
  3.4e-19   7-113   B3 DNA binding domain  
  1.1e-16   256-345   B3 DNA binding domain  
Bra030087   0.00000000000000549   164-259   B3 DNA binding domain  
Bra030287   0.0000000000000163   391-484   B3 DNA binding domain  
  0.000000000000412   317-374   B3 DNA binding domain  
Bra030458   2.49e-28   141-238   B3 DNA binding domain  
Bra030476   2.35e-28   178-284   B3 DNA binding domain  
Bra030497   6.15e-30   50-154   B3 DNA binding domain  
Bra031186   6.87e-16   304-397   B3 DNA binding domain  
  0.000000000000179   227-282   B3 DNA binding domain  
Bra031302   3.14e-17   93-186   B3 DNA binding domain  
Bra031565   6.87e-19   4-103   B3 DNA binding domain  
  4.51e-17   117-210   B3 DNA binding domain  
Bra032074   7.26e-17   53-137   B3 DNA binding domain  
Bra032075   4.51e-21   1051-1148   B3 DNA binding domain  
  6.87e-21   902-1006   B3 DNA binding domain  
  2.75e-20   428-523   B3 DNA binding domain  
  5.49e-20   528-620   B3 DNA binding domain  
  4.12e-19   777-874   B3 DNA binding domain  
  7.46e-19   17-114   B3 DNA binding domain  
  1.04e-16   649-750   B3 DNA binding domain  
  2.62e-16   155-247   B3 DNA binding domain  
  0.00000000000000151   280-380   B3 DNA binding domain  
Bra032076   5.1e-21   17-114   B3 DNA binding domain  
  6.28e-16   146-241   B3 DNA binding domain  
Bra032077   1.2e-20   116-215   B3 DNA binding domain  
  2.16e-18   393-488   B3 DNA binding domain  
  1.63e-16   246-340   B3 DNA binding domain  
  0.0000000000000112   5-89   B3 DNA binding domain  
Bra032078   5.3e-20   3-103   B3 DNA binding domain  
  1.59e-19   138-232   B3 DNA binding domain  
  1.65e-19   273-365   B3 DNA binding domain  
Bra032079   4.71e-19   141-230   B3 DNA binding domain  
  0.0000000000000432   19-76   B3 DNA binding domain  
Bra032286   6.67e-22   116-215   B3 DNA binding domain  
Bra032459   0.0000000451   130-253   B3 DNA binding domain  
Bra032890   0.00000000000000654   162-255   B3 DNA binding domain  
Bra032953   3.53e-22   93-191   B3 DNA binding domain  
Bra033294   3.4e-28   48-140   B3 DNA binding domain  
Bra033739   0.0000804   521-564   B3 DNA binding domain  
Bra034234   1.44e-28   119-232   B3 DNA binding domain  
Bra034577   1.63e-17   17-107   B3 DNA binding domain  
Bra034801   2.55e-19   4-104   B3 DNA binding domain  
  4.9e-17   126-219   B3 DNA binding domain  
Bra034828   4.71e-31   20-136   B3 DNA binding domain  
Bra034869   5.89e-23   106-209   B3 DNA binding domain  
  3.92e-18   221-319   B3 DNA binding domain  
  0.00000000000000484   16-82   B3 DNA binding domain  
Bra035129   6.67e-25   117-215   B3 DNA binding domain  
Bra035254   0.000000000412   24-104   B3 DNA binding domain  
Bra035324   9.22e-22   122-216   B3 DNA binding domain  
Bra035427   1.86e-44   113-253   B3 DNA binding domain  
Bra035487   0.00000981   14-112   B3 DNA binding domain  
Bra035615   0.00000000412   20-120   B3 DNA binding domain  
Bra035910   6.54e-39   189-321   B3 DNA binding domain  
Bra035949   0.00000000000000628   25-91   B3 DNA binding domain  
Bra035950   4.12e-19   4-103   B3 DNA binding domain  
  4.51e-17   117-210   B3 DNA binding domain  
Bra035962   1.12e-18   137-223   B3 DNA binding domain  
  1e-17   4-104   B3 DNA binding domain  
Bra036062   3.92e-19   4-104   B3 DNA binding domain  
  1.24e-16   126-219   B3 DNA binding domain  
Bra036063   4.9e-19   4-104   B3 DNA binding domain  
  1.49e-16   126-219   B3 DNA binding domain  
Bra036068   3.92e-17   39-133   B3 DNA binding domain  
Bra036483   9.22e-20   69-170   B3 DNA binding domain  
  0.00000000000000353   197-288   B3 DNA binding domain  
Bra036486   5.49e-20   3-104   B3 DNA binding domain  
  0.00000000000000216   131-222   B3 DNA binding domain  
Bra037010   2.35e-19   289-383   B3 DNA binding domain  
  7.06e-19   545-642   B3 DNA binding domain  
Bra037132   1.96e-22   11-108   B3 DNA binding domain  
  0.00000000000000235   184-281   B3 DNA binding domain  
Bra037231   1.47e-20   3-104   B3 DNA binding domain  
  0.0000000000000746   127-216   B3 DNA binding domain  
Bra037417   1.57e-29   19-106   B3 DNA binding domain  
Bra037503   8.04e-20   4-104   B3 DNA binding domain  
Bra037504   5.69e-20   4-104   B3 DNA binding domain  
Bra037507   1.14e-18   73-173   B3 DNA binding domain  
Bra037544   3.53e-22   238-339   B3 DNA binding domain  
  4.9e-21   3-98   B3 DNA binding domain  
Bra037663   1.59e-20   159-254   B3 DNA binding domain  
  3.53e-16   15-115   B3 DNA binding domain  
Bra038346   2.49e-32   186-288   B3 DNA binding domain  
Bra038943   1.45e-16   9-98   B3 DNA binding domain  
Bra040478   1.83e-30   25-128   B3 DNA binding domain  
Bra040538   0.000000000000122   43-152   B3 DNA binding domain  
Bra041023   3.4e-32   29-144   B3 DNA binding domain  
 
Weak hits:
Bra002742   0.012   119-157   B3 DNA binding domain  
Bra005017   0.000294   127-207   B3 DNA binding domain  
Bra038024   0.00337   5-37   B3 DNA binding domain  
Bra039961   0.0177   9-40   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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