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DNA-binding pseudobarrel domain superfamily domain assignments
in
Oryza brachyantha 22

Assignment details

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Oryza brachyantha 22 has 96 significant domains in 77 proteins.

     

Sequence ID   Evalue   Region   Family  
OB0050G10050.1   0.000000173   34-128   B3 DNA binding domain  
OB01G12600.1   5.23e-29   160-274   B3 DNA binding domain  
OB01G12610.1   9.94e-31   81-191   B3 DNA binding domain  
OB01G18700.1   4.51e-22   122-217   B3 DNA binding domain  
OB01G18840.1   1.7e-36   55-189   B3 DNA binding domain  
OB01G28300.1   0.0000049   164-231   B3 DNA binding domain  
  0.00392   322-392   B3 DNA binding domain  
OB01G34780.1   0.0000000883   58-143   B3 DNA binding domain  
OB01G35190.1   9.03e-43   151-284   B3 DNA binding domain  
OB01G36520.1   1.96e-30   209-305   B3 DNA binding domain  
OB01G37620.1   1e-17   66-164   B3 DNA binding domain  
OB01G38300.1   4.71e-23   282-378   B3 DNA binding domain  
  4.9e-21   17-125   B3 DNA binding domain  
OB01G38320.1   6.47e-20   5-111   B3 DNA binding domain  
OB01G39330.1   0.0000000334   106-200   B3 DNA binding domain  
OB01G40150.1   1.7e-46   78-233   B3 DNA binding domain  
OB01G49710.1   5.1e-22   77-175   B3 DNA binding domain  
  0.0000000000000373   529-621   B3 DNA binding domain  
OB01G50120.1   7.72e-22   527-621   B3 DNA binding domain  
OB01G51580.1   3.79e-40   75-212   B3 DNA binding domain  
OB02G13010.1   1.31e-41   131-271   B3 DNA binding domain  
OB02G14210.1   8.89e-49   121-265   B3 DNA binding domain  
OB02G23600.1   0.0000000000000301   27-125   B3 DNA binding domain  
OB02G28170.1   5.62e-44   115-254   B3 DNA binding domain  
OB02G30290.1   8.44e-17   256-349   B3 DNA binding domain  
  0.0000000000182   816-891   B3 DNA binding domain  
OB02G32150.1   8.37e-29   39-145   B3 DNA binding domain  
OB02G35380.1   4.45e-29   95-202   B3 DNA binding domain  
OB03G11610.1   6.02e-29   37-128   B3 DNA binding domain  
OB03G16290.1   4.12e-24   128-225   B3 DNA binding domain  
OB03G34300.1   9.22e-23   22-121   B3 DNA binding domain  
  9.81e-19   252-357   B3 DNA binding domain  
  4.71e-16   450-553   B3 DNA binding domain  
OB03G34310.1   7.65e-18   9-115   B3 DNA binding domain  
OB03G34330.1   9.22e-20   170-263   B3 DNA binding domain  
  0.0000000000216   363-446   B3 DNA binding domain  
  0.000116   25-79   B3 DNA binding domain  
OB03G34360.1   5.89e-18   428-532   B3 DNA binding domain  
  4.32e-17   263-357   B3 DNA binding domain  
  0.00000000000000294   59-151   B3 DNA binding domain  
OB03G34370.1   1.02e-22   22-120   B3 DNA binding domain  
  6.54e-19   349-447   B3 DNA binding domain  
  5.89e-18   213-312   B3 DNA binding domain  
OB03G34380.1   1.1e-19   25-124   B3 DNA binding domain  
  0.00000000000000255   193-295   B3 DNA binding domain  
OB03G34390.1   2.35e-22   21-119   B3 DNA binding domain  
  5.1e-19   187-291   B3 DNA binding domain  
OB03G34400.1   1.33e-23   28-128   B3 DNA binding domain  
OB04G16320.1   1.82e-18   87-186   B3 DNA binding domain  
  0.0000000000000294   263-375   B3 DNA binding domain  
  0.000000000353   3-64   B3 DNA binding domain  
OB04G20880.1   1.31e-44   116-256   B3 DNA binding domain  
OB04G25990.1   3.53e-26   91-198   B3 DNA binding domain  
OB04G29740.1   1.1e-21   109-183   B3 DNA binding domain  
OB04G35570.1   4.32e-45   133-272   B3 DNA binding domain  
OB04G36140.1   7.98e-48   124-268   B3 DNA binding domain  
OB04G36540.1   4.05e-18   310-403   B3 DNA binding domain  
OB04G37650.1   6.67e-27   114-231   B3 DNA binding domain  
OB05G17230.1   0.000000608   30-132   B3 DNA binding domain  
OB05G28010.1   2.35e-23   129-225   B3 DNA binding domain  
OB05G30280.1   5.49e-43   22-171   B3 DNA binding domain  
OB05G32250.1   5.76e-30   15-129   B3 DNA binding domain  
OB05G33320.1   4.05e-43   83-205   B3 DNA binding domain  
OB06G10550.1   9.55e-28   32-134   B3 DNA binding domain  
OB06G10760.1   0.000000804   71-130   B3 DNA binding domain  
OB06G15600.1   1.12e-23   125-223   B3 DNA binding domain  
OB06G15720.1   5.49e-44   117-256   B3 DNA binding domain  
OB06G29590.1   5.3e-17   106-210   B3 DNA binding domain  
  0.00000124   283-354   B3 DNA binding domain  
  0.0108   18-80   B3 DNA binding domain  
OB06G32420.1   1.7e-48   119-263   B3 DNA binding domain  
OB06G32920.1   1.16e-28   124-230   B3 DNA binding domain  
OB06G34290.1   3.27e-43   146-286   B3 DNA binding domain  
OB07G14160.1   0.00000000000000589   97-205   B3 DNA binding domain  
OB07G24510.1   5.36e-19   367-469   B3 DNA binding domain  
OB07G31850.1   3.01e-21   361-464   B3 DNA binding domain  
OB08G10110.1   1.7e-16   254-343   B3 DNA binding domain  
OB08G13710.1   0.00000000000706   59-123   B3 DNA binding domain  
OB08G18200.1   0.00000314   291-339   B3 DNA binding domain  
OB08G21050.1   1.83e-16   27-129   B3 DNA binding domain  
OB08G27580.1   9.68e-42   120-259   B3 DNA binding domain  
OB09G13070.1   0.000000549   143-193   B3 DNA binding domain  
OB09G15010.1   6.8e-20   142-249   B3 DNA binding domain  
OB10G20590.1   6.8e-28   93-200   B3 DNA binding domain  
OB10G24100.1   1.16e-23   36-113   B3 DNA binding domain  
OB11G12920.1   6.02e-29   34-128   B3 DNA binding domain  
OB11G14640.1   1.02e-24   320-420   B3 DNA binding domain  
  1.67e-21   60-157   B3 DNA binding domain  
OB11G21910.1   3.63e-41   157-291   B3 DNA binding domain  
OB11G23120.1   0.000000000000294   61-119   B3 DNA binding domain  
OB11G26660.1   0.000000000000017   7-61   B3 DNA binding domain  
OB12G13420.1   1.83e-29   32-127   B3 DNA binding domain  
OB12G20020.1   3.14e-41   55-189   B3 DNA binding domain  
OB12G24260.1   2.75e-23   21-120   B3 DNA binding domain  
  1.16e-19   381-485   B3 DNA binding domain  
  5.89e-19   230-329   B3 DNA binding domain  
OB12G24270.1   1.16e-17   21-124   B3 DNA binding domain  
  0.00000000000000844   240-326   B3 DNA binding domain  
OB12G25550.1   1.18e-47   117-261   B3 DNA binding domain  
 
Weak hits:
OB01G35440.1   0.00018   36-99   B3 DNA binding domain  
OB03G18490.1   0.0365   14-65   B3 DNA binding domain  
OB04G17630.1   0.000647   146-195   B3 DNA binding domain  
OB08G18420.1   0.00628   45-110   B3 DNA binding domain  
OB10G14690.1   0.00353   36-85   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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