SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


DNA-binding pseudobarrel domain superfamily domain assignments
in
Oryza glaberrima

Assignment details

(show help)


Oryza glaberrima has 109 significant domains in 80 proteins.

     

Sequence ID   Evalue   Region   Family  
ORGLA01G0022400.1   2.22e-29   179-291   B3 DNA binding domain  
ORGLA01G0022600.1   5.89e-30   184-295   B3 DNA binding domain  
ORGLA01G0075500.1   0.000000353   180-285   B3 DNA binding domain  
ORGLA01G0077700.1   4.71e-37   113-251   B3 DNA binding domain  
ORGLA01G0122800.1   0.00000373   93-134   B3 DNA binding domain  
ORGLA01G0213000.1   2.35e-43   144-284   B3 DNA binding domain  
ORGLA01G0225300.1   2.88e-30   214-309   B3 DNA binding domain  
ORGLA01G0237800.1   7.46e-18   67-165   B3 DNA binding domain  
ORGLA01G0241400.1   1.53e-23   286-382   B3 DNA binding domain  
  4.71e-21   17-125   B3 DNA binding domain  
ORGLA01G0241600.1   1.96e-21   6-115   B3 DNA binding domain  
ORGLA01G0349100.1   1.75e-22   76-174   B3 DNA binding domain  
  0.0000000000000706   571-661   B3 DNA binding domain  
ORGLA01G0353400.1   9.68e-22   537-631   B3 DNA binding domain  
ORGLA01G0363100.1   8.63e-40   123-260   B3 DNA binding domain  
ORGLA02G0031900.1   1.31e-41   137-277   B3 DNA binding domain  
ORGLA02G0045800.1   1.44e-48   119-263   B3 DNA binding domain  
ORGLA02G0069900.1   0.00000000000000392   10-79   B3 DNA binding domain  
ORGLA02G0134900.1   9.02e-19   27-126   B3 DNA binding domain  
ORGLA02G0135000.1   1.82e-17   27-132   B3 DNA binding domain  
ORGLA02G0176700.1   4.45e-44   101-241   B3 DNA binding domain  
ORGLA02G0195900.1   1.94e-16   382-475   B3 DNA binding domain  
  0.000000000000159   961-1052   B3 DNA binding domain  
ORGLA02G0215100.1   8.63e-29   116-222   B3 DNA binding domain  
ORGLA02G0241100.1   5.36e-29   92-200   B3 DNA binding domain  
ORGLA02G0290700.1   0.0000000562   15-46   B3 DNA binding domain  
ORGLA02G0343600.1   0.00000000000000334   90-189   B3 DNA binding domain  
ORGLA03G0243400.1   2.16e-23   22-121   B3 DNA binding domain  
  1.24e-18   227-333   B3 DNA binding domain  
  3.53e-18   425-528   B3 DNA binding domain  
ORGLA03G0243600.1   3.34e-20   23-121   B3 DNA binding domain  
  1.67e-18   223-327   B3 DNA binding domain  
  3.73e-16   442-525   B3 DNA binding domain  
ORGLA03G0243700.1   6.28e-24   23-121   B3 DNA binding domain  
ORGLA03G0243900.1   8.63e-24   242-335   B3 DNA binding domain  
  1.49e-20   25-123   B3 DNA binding domain  
  4.51e-19   409-516   B3 DNA binding domain  
ORGLA03G0244100.1   2.16e-22   25-125   B3 DNA binding domain  
  2.22e-20   452-560   B3 DNA binding domain  
  7.85e-20   243-344   B3 DNA binding domain  
ORGLA03G0244700.1   5.1e-25   143-241   B3 DNA binding domain  
  1.61e-23   446-544   B3 DNA binding domain  
  6.67e-22   726-825   B3 DNA binding domain  
  7.06e-18   927-1025   B3 DNA binding domain  
  2.16e-16   330-413   B3 DNA binding domain  
  0.0314   635-696   B3 DNA binding domain  
ORGLA03G0244900.1   1.12e-20   202-305   B3 DNA binding domain  
  4.32e-20   42-124   B3 DNA binding domain  
ORGLA03G0245000.1   3.53e-23   28-128   B3 DNA binding domain  
  0.000000000000196   247-340   B3 DNA binding domain  
ORGLA03G0245100.1   2.55e-21   30-129   B3 DNA binding domain  
  0.00000000000000163   252-342   B3 DNA binding domain  
ORGLA03G0402000.1   7.59e-19   367-464   B3 DNA binding domain  
ORGLA03G0402500.1   0.000000326   296-353   B3 DNA binding domain  
ORGLA04G0074500.1   0.00000000000000334   90-189   B3 DNA binding domain  
ORGLA04G0107000.1   4.97e-45   110-255   B3 DNA binding domain  
ORGLA04G0154800.1   0.00000165   56-97   B3 DNA binding domain  
ORGLA04G0160200.1   4.84e-29   121-228   B3 DNA binding domain  
ORGLA04G0198400.1   5.76e-29   84-175   B3 DNA binding domain  
ORGLA04G0248600.1   3.4e-45   133-272   B3 DNA binding domain  
ORGLA04G0254900.1   7.98e-48   131-275   B3 DNA binding domain  
ORGLA04G0258500.1   1.1e-18   296-393   B3 DNA binding domain  
ORGLA04G0258600.1   9.29e-19   367-464   B3 DNA binding domain  
ORGLA04G0270000.1   2.09e-26   111-231   B3 DNA binding domain  
ORGLA05G0069900.1   0.00000275   271-371   B3 DNA binding domain  
ORGLA05G0178700.1   1.37e-24   132-228   B3 DNA binding domain  
ORGLA05G0198900.1   1.15e-42   122-271   B3 DNA binding domain  
ORGLA05G0222700.1   2.75e-43   136-258   B3 DNA binding domain  
ORGLA06G0005000.1   4.19e-25   29-133   B3 DNA binding domain  
ORGLA06G0055700.1   4.12e-24   132-230   B3 DNA binding domain  
ORGLA06G0056900.1   2.49e-44   117-256   B3 DNA binding domain  
ORGLA06G0177400.1   0.00000294   56-97   B3 DNA binding domain  
ORGLA06G0180700.1   3.34e-17   139-243   B3 DNA binding domain  
  0.0000000000196   12-124   B3 DNA binding domain  
  0.0000000275   315-390   B3 DNA binding domain  
ORGLA06G0209500.1   1.16e-28   124-230   B3 DNA binding domain  
ORGLA06G0221800.1   3.4e-43   142-282   B3 DNA binding domain  
ORGLA07G0045100.1   0.000000000000576   120-229   B3 DNA binding domain  
ORGLA07G0067400.1   0.000000000000196   8-92   B3 DNA binding domain  
ORGLA07G0151800.1   2.62e-19   453-555   B3 DNA binding domain  
ORGLA07G0207500.1   3.01e-21   360-463   B3 DNA binding domain  
ORGLA08G0028800.1   1.31e-27   68-162   B3 DNA binding domain  
ORGLA08G0077600.1   0.00000392   339-384   B3 DNA binding domain  
ORGLA08G0091000.1   2.94e-19   22-123   B3 DNA binding domain  
  0.0471   329-381   B3 DNA binding domain  
ORGLA08G0091200.1   3.14e-21   20-114   B3 DNA binding domain  
ORGLA08G0183900.1   4.84e-42   122-261   B3 DNA binding domain  
ORGLA09G0063400.1   0.0000863   165-222   B3 DNA binding domain  
ORGLA10G0047100.1   0.0000000000000171   52-132   B3 DNA binding domain  
  0.000000000167   192-269   B3 DNA binding domain  
ORGLA10G0115500.1   1.96e-29   119-232   B3 DNA binding domain  
ORGLA10G0119700.1   1.7e-28   32-136   B3 DNA binding domain  
ORGLA11G0033600.1   8.63e-30   35-130   B3 DNA binding domain  
ORGLA11G0053000.1   1.44e-25   266-366   B3 DNA binding domain  
  8.11e-21   19-102   B3 DNA binding domain  
ORGLA11G0129300.1   1.18e-40   75-209   B3 DNA binding domain  
ORGLA11G0183600.1   0.00000000811   14-49   B3 DNA binding domain  
ORGLA12G0033700.1   1.19e-30   33-127   B3 DNA binding domain  
ORGLA12G0109100.1   2.94e-41   141-277   B3 DNA binding domain  
ORGLA12G0150100.1   1.43e-20   3-97   B3 DNA binding domain  
  1.79e-16   202-292   B3 DNA binding domain  
  5.69e-16   558-660   B3 DNA binding domain  
  0.00000000000000275   431-536   B3 DNA binding domain  
  0.00143   338-384   B3 DNA binding domain  
ORGLA12G0150200.1   7.26e-23   21-119   B3 DNA binding domain  
  1.06e-19   381-487   B3 DNA binding domain  
  3.73e-18   230-329   B3 DNA binding domain  
ORGLA12G0150300.1   7.06e-21   241-342   B3 DNA binding domain  
  4.32e-18   21-124   B3 DNA binding domain  
ORGLA12G0150600.1   2.55e-18   253-356   B3 DNA binding domain  
  2.16e-17   21-124   B3 DNA binding domain  
ORGLA12G0159700.1   7.06e-49   117-261   B3 DNA binding domain  
 
Weak hits:
ORGLA01G0215300.1   0.000106   266-330   B3 DNA binding domain  
ORGLA02G0046400.1   0.0388   130-167   B3 DNA binding domain  
ORGLA05G0071600.1   0.0161   306-355   B3 DNA binding domain  
ORGLA08G0079700.1   0.00369   228-291   B3 DNA binding domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a DNA-binding pseudobarrel domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]