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DNA-binding pseudobarrel domain superfamily domain assignments
in
Phyllostachys heterocyclavar. pubescens

Assignment details

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Phyllostachys heterocyclavar. pubescens has 91 significant domains in 82 proteins.

     

Sequence ID   Evalue   Region   Family  
PH01000000G1160   3.53e-16   99-166   B3 DNA binding domain  
PH01000002G3110   6.93e-40   117-253   B3 DNA binding domain  
PH01000011G0660   4.84e-39   225-336   B3 DNA binding domain  
PH01000014G0610   0.00000000000000746   103-145   Type II restriction endonuclease effector domain  
  0.0000000000654   205-278   B3 DNA binding domain  
PH01000015G1290   1.96e-30   177-280   B3 DNA binding domain  
PH01000017G0270   1.07e-29   34-125   B3 DNA binding domain  
PH01000018G0940   7.19e-45   47-202   B3 DNA binding domain  
PH01000024G2370   1.83e-28   156-258   B3 DNA binding domain  
PH01000025G0410   2.35e-21   25-119   B3 DNA binding domain  
  4.71e-20   224-326   B3 DNA binding domain  
  0.0000000000000667   372-470   B3 DNA binding domain  
PH01000025G0470   4.12e-21   21-120   B3 DNA binding domain  
  1.28e-18   241-345   B3 DNA binding domain  
PH01000038G1330   1.22e-21   154-250   B3 DNA binding domain  
PH01000044G0540   3.79e-24   31-128   B3 DNA binding domain  
PH01000046G0220   2.62e-43   157-277   B3 DNA binding domain  
PH01000057G1420   1.57e-36   133-246   B3 DNA binding domain  
PH01000059G1450   4.97e-29   35-128   B3 DNA binding domain  
PH01000076G0800   1.94e-17   25-115   B3 DNA binding domain  
PH01000087G1340   8.5e-20   115-212   Type II restriction endonuclease effector domain  
PH01000093G0670   0.00000000000183   29-100   B3 DNA binding domain  
PH01000093G0690   3.53e-30   119-192   B3 DNA binding domain  
PH01000114G0050   1.7e-42   88-228   B3 DNA binding domain  
PH01000115G0880   2.94e-24   130-227   B3 DNA binding domain  
PH01000116G0910   8.63e-41   136-270   B3 DNA binding domain  
PH01000132G1210   7.06e-25   22-122   B3 DNA binding domain  
  3.73e-18   249-354   B3 DNA binding domain  
PH01000176G0540   7.19e-36   124-253   B3 DNA binding domain  
PH01000183G0570   2.35e-47   109-251   B3 DNA binding domain  
PH01000198G0380   4.05e-20   397-499   B3 DNA binding domain  
PH01000222G0180   1.26e-42   123-256   B3 DNA binding domain  
PH01000227G0020   1.57e-41   104-267   B3 DNA binding domain  
PH01000237G0400   0.00000000000000105   115-156   Type II restriction endonuclease effector domain  
PH01000237G0420   0.00000000392   2-81   B3 DNA binding domain  
PH01000246G0410   0.00000000000000216   44-149   B3 DNA binding domain  
PH01000259G1120   0.00000576   53-85   B3 DNA binding domain  
PH01000261G0320   1.04e-24   57-153   B3 DNA binding domain  
PH01000277G0820   4.32e-45   55-208   B3 DNA binding domain  
PH01000281G0890   4.19e-30   176-277   B3 DNA binding domain  
PH01000297G0830   1.05e-26   193-298   B3 DNA binding domain  
PH01000305G0690   7.72e-29   65-173   B3 DNA binding domain  
PH01000384G0170   0.0000000000000194   251-361   B3 DNA binding domain  
  0.00000118   114-140   Type II restriction endonuclease effector domain  
PH01000469G0440   1.96e-23   127-223   B3 DNA binding domain  
PH01000479G0550   3.01e-28   1-101   B3 DNA binding domain  
PH01000483G0220   5.23e-26   112-212   B3 DNA binding domain  
PH01000528G0920   1.69e-24   130-226   B3 DNA binding domain  
PH01000531G0070   9.22e-20   9-107   B3 DNA binding domain  
  0.00000000000000163   132-229   B3 DNA binding domain  
PH01000548G0300   1.96e-21   2-101   B3 DNA binding domain  
PH01000581G0530   2.35e-23   172-262   B3 DNA binding domain  
PH01000623G0440   2.75e-36   147-251   B3 DNA binding domain  
PH01000626G0040   1.96e-36   105-245   B3 DNA binding domain  
PH01000667G0020   1.1e-31   107-211   B3 DNA binding domain  
PH01000819G0520   4.05e-29   33-127   B3 DNA binding domain  
PH01000845G0410   1.2e-26   1116-1224   B3 DNA binding domain  
PH01001026G0300   1.12e-28   149-255   B3 DNA binding domain  
PH01001094G0220   9.81e-21   391-494   B3 DNA binding domain  
PH01001285G0430   1.7e-17   90-174   B3 DNA binding domain  
PH01001390G0400   6.54e-29   33-127   B3 DNA binding domain  
PH01001555G0390   6.67e-26   126-226   B3 DNA binding domain  
PH01001568G0220   2.62e-30   176-274   B3 DNA binding domain  
PH01001690G0310   8.11e-42   145-259   B3 DNA binding domain  
PH01001899G0250   3.01e-33   87-202   B3 DNA binding domain  
PH01001971G0060   9.42e-30   198-292   B3 DNA binding domain  
PH01002064G0190   6.08e-17   181-274   B3 DNA binding domain  
  0.000000000124   787-842   B3 DNA binding domain  
PH01002160G0180   6.67e-40   116-252   B3 DNA binding domain  
PH01002311G0210   8.24e-23   126-218   B3 DNA binding domain  
PH01002321G0340   6.67e-22   22-120   B3 DNA binding domain  
  2.55e-19   221-316   B3 DNA binding domain  
PH01002498G0280   4.45e-29   120-227   B3 DNA binding domain  
PH01002685G0120   1.83e-29   102-207   B3 DNA binding domain  
PH01002806G0200   4.51e-40   130-263   B3 DNA binding domain  
PH01002850G0020   4.45e-40   108-248   B3 DNA binding domain  
PH01002854G0060   0.0000000785   97-150   B3 DNA binding domain  
PH01002857G0060   3.53e-43   151-291   B3 DNA binding domain  
PH01003070G0080   0.000000049   144-171   Type II restriction endonuclease effector domain  
PH01003072G0130   0.00000981   232-286   B3 DNA binding domain  
PH01003096G0200   2.09e-35   149-262   B3 DNA binding domain  
PH01003631G0130   0.000000000051   137-175   B3 DNA binding domain  
PH01003974G0030   6.47e-20   55-149   B3 DNA binding domain  
PH01004526G0170   2.09e-27   116-222   B3 DNA binding domain  
PH01004739G0010   2.22e-19   23-100   B3 DNA binding domain  
PH01005322G0010   8.54e-25   112-218   B3 DNA binding domain  
PH01005516G0020   1.57e-17   195-284   B3 DNA binding domain  
PH01006252G0020   2.49e-20   579-681   B3 DNA binding domain  
PH01007612G0010   2.49e-43   112-251   B3 DNA binding domain  
PH01013505G0010   9.55e-37   128-256   B3 DNA binding domain  
PH01160280G0010   0.00000000196   83-153   B3 DNA binding domain  
 
Weak hits:
PH01000093G0170   0.0432   91-119   B3 DNA binding domain  
PH01000164G0220   0.00471   184-246   B3 DNA binding domain  
PH01000577G0140   0.000108   692-735   Type II restriction endonuclease effector domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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