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DNA-binding pseudobarrel domain superfamily domain assignments
in
Setaria italica v164

Assignment details

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Setaria italica v164 has 153 significant domains in 114 proteins.

     

Sequence ID   Evalue   Region   Family  
Si000340m|PACid:19677140   6.67e-40   123-258   B3 DNA binding domain  
Si000415m|PACid:19677141   6.02e-40   123-258   B3 DNA binding domain  
Si000464m|PACid:19677142   5.62e-40   123-258   B3 DNA binding domain  
Si000466m|PACid:19677143   5.62e-40   122-257   B3 DNA binding domain  
Si000497m|PACid:19676396   3.14e-22   531-627   B3 DNA binding domain  
Si000540m|PACid:19676255   4.71e-37   106-245   B3 DNA binding domain  
Si000542m|PACid:19673800   8.5e-45   112-266   B3 DNA binding domain  
Si000545m|PACid:19673799   8.5e-45   112-266   B3 DNA binding domain  
Si000554m|PACid:19673802   8.5e-45   112-266   B3 DNA binding domain  
Si000555m|PACid:19673801   8.5e-45   112-266   B3 DNA binding domain  
Si001909m|PACid:19678624   2.62e-30   187-293   B3 DNA binding domain  
Si002708m|PACid:19675568   3.14e-24   131-229   B3 DNA binding domain  
Si003241m|PACid:19677435   0.000000106   6-70   B3 DNA binding domain  
Si003274m|PACid:19677436   0.0000000981   6-70   B3 DNA binding domain  
Si004045m|PACid:19675231   6.67e-31   212-305   B3 DNA binding domain  
Si004140m|PACid:19676521   1.77e-20   83-176   B3 DNA binding domain  
  0.0000000000000471   571-644   B3 DNA binding domain  
Si004233m|PACid:19674883   0.0000000824   157-204   B3 DNA binding domain  
Si004237m|PACid:19675889   0.000000018   191-291   B3 DNA binding domain  
Si004459m|PACid:19676548   1.96e-19   73-169   B3 DNA binding domain  
Si004598m|PACid:19674871   6.02e-42   133-253   B3 DNA binding domain  
Si004665m|PACid:19677252   0.00000000334   90-168   B3 DNA binding domain  
Si004907m|PACid:19677808   0.0000000824   156-251   B3 DNA binding domain  
Si004932m|PACid:19676881   0.000000196   155-250   B3 DNA binding domain  
Si004979m|PACid:19674309   6.28e-26   77-183   B3 DNA binding domain  
Si005032m|PACid:19677152   1.39e-17   35-104   B3 DNA binding domain  
Si005087m|PACid:19676045   0.000000000000608   121-195   B3 DNA binding domain  
Si005741m|PACid:19705473   2.35e-43   60-200   B3 DNA binding domain  
Si005753m|PACid:19705042   2.09e-44   117-256   B3 DNA binding domain  
Si005802m|PACid:19703962   3.53e-48   137-281   B3 DNA binding domain  
Si005812m|PACid:19703963   3.53e-48   119-263   B3 DNA binding domain  
Si005819m|PACid:19703964   3.4e-48   119-263   B3 DNA binding domain  
Si005991m|PACid:19704688   6.54e-29   119-226   B3 DNA binding domain  
Si007342m|PACid:19704693   0.00000000000000139   62-160   B3 DNA binding domain  
Si008427m|PACid:19704831   2.16e-19   112-211   B3 DNA binding domain  
  0.0000000000155   14-99   B3 DNA binding domain  
  0.000412   288-353   B3 DNA binding domain  
Si008509m|PACid:19705229   1.44e-27   27-129   B3 DNA binding domain  
Si009541m|PACid:19694259   4.84e-29   106-218   B3 DNA binding domain  
Si009558m|PACid:19697090   1.44e-44   115-257   B3 DNA binding domain  
Si010026m|PACid:19697138   9.42e-16   385-468   B3 DNA binding domain  
  0.00000000000000314   214-306   B3 DNA binding domain  
Si010137m|PACid:19697139   0.00000000000000275   214-306   B3 DNA binding domain  
  0.0000000000765   391-436   B3 DNA binding domain  
Si010155m|PACid:19694590   4.71e-19   137-239   B3 DNA binding domain  
  0.000000000000137   308-398   B3 DNA binding domain  
  0.00000000000216   27-115   B3 DNA binding domain  
Si010378m|PACid:19696693   0.0000000000173   298-372   B3 DNA binding domain  
  0.0000000000235   131-213   B3 DNA binding domain  
  0.00000000108   26-105   B3 DNA binding domain  
Si010849m|PACid:19696850   6.15e-29   34-135   B3 DNA binding domain  
Si011653m|PACid:19694008   0.0000000000000124   170-255   B3 DNA binding domain  
Si011823m|PACid:19694883   1.12e-28   97-188   B3 DNA binding domain  
Si012066m|PACid:19694692   0.00000000000000182   127-226   B3 DNA binding domain  
  0.0000000000049   11-68   B3 DNA binding domain  
Si012086m|PACid:19697212   6.47e-19   137-239   B3 DNA binding domain  
  1.86e-17   306-396   B3 DNA binding domain  
  0.00000000000177   25-115   B3 DNA binding domain  
Si012124m|PACid:19697315   2.16e-16   84-183   B3 DNA binding domain  
  0.000000000000451   242-337   B3 DNA binding domain  
  0.00353   47-78   B3 DNA binding domain  
Si012142m|PACid:19695848   0.0000000000133   25-99   B3 DNA binding domain  
Si012228m|PACid:19693799   5.62e-19   115-194   B3 DNA binding domain  
Si012375m|PACid:19697235   0.00000000000000157   132-231   B3 DNA binding domain  
  0.0000000000000275   269-359   B3 DNA binding domain  
  0.0000000122   28-109   B3 DNA binding domain  
Si012530m|PACid:19697525   0.0000000000000051   130-229   B3 DNA binding domain  
  0.0000000000000184   301-388   B3 DNA binding domain  
  0.00000334   27-108   B3 DNA binding domain  
Si012575m|PACid:19693895   3.53e-16   7-93   B3 DNA binding domain  
Si012721m|PACid:19696021   0.00000018   103-187   B3 DNA binding domain  
  0.000000314   9-88   B3 DNA binding domain  
  0.0569   254-297   B3 DNA binding domain  
Si013155m|PACid:19692109   1.57e-40   122-261   B3 DNA binding domain  
Si013158m|PACid:19692110   1.57e-40   119-258   B3 DNA binding domain  
Si014362m|PACid:19693553   1.96e-28   54-157   B3 DNA binding domain  
Si014404m|PACid:19691823   6.67e-23   123-220   B3 DNA binding domain  
Si015586m|PACid:19691397   0.00000000000000667   227-315   B3 DNA binding domain  
Si016147m|PACid:19690030   3.53e-40   129-269   B3 DNA binding domain  
Si016245m|PACid:19687455   0.000000000000108   288-381   B3 DNA binding domain  
  0.000000000000589   834-925   B3 DNA binding domain  
Si016262m|PACid:19689263   3.01e-48   119-263   B3 DNA binding domain  
Si016326m|PACid:19687456   0.0000000000000883   288-381   B3 DNA binding domain  
Si016509m|PACid:19686089   6.15e-29   115-224   B3 DNA binding domain  
Si016559m|PACid:19686090   5.89e-29   115-224   B3 DNA binding domain  
Si016562m|PACid:19689242   1.83e-43   114-252   B3 DNA binding domain  
Si016563m|PACid:19689243   1.83e-43   114-252   B3 DNA binding domain  
Si020241m|PACid:19688258   2.22e-29   102-211   B3 DNA binding domain  
Si021121m|PACid:19702329   1.03e-44   133-272   B3 DNA binding domain  
Si021157m|PACid:19697803   1.29e-47   117-258   B3 DNA binding domain  
Si021216m|PACid:19700533   6.41e-41   144-276   B3 DNA binding domain  
Si021223m|PACid:19700662   3.43e-17   128-259   B3 DNA binding domain  
Si021333m|PACid:19700534   5.1e-41   144-276   B3 DNA binding domain  
Si021589m|PACid:19701878   1.15e-42   26-163   B3 DNA binding domain  
Si021595m|PACid:19699084   5.49e-43   3-121   B3 DNA binding domain  
Si021613m|PACid:19699085   5.89e-43   3-121   B3 DNA binding domain  
Si021833m|PACid:19701328   3.14e-27   106-213   B3 DNA binding domain  
Si021949m|PACid:19699164   0.00000000000124   285-403   B3 DNA binding domain  
Si022505m|PACid:19698546   1.94e-17   27-120   B3 DNA binding domain  
  8.63e-16   238-342   B3 DNA binding domain  
Si022802m|PACid:19701869   1.47e-21   191-295   B3 DNA binding domain  
  4.32e-18   3-82   B3 DNA binding domain  
Si022916m|PACid:19700127   1e-23   134-230   B3 DNA binding domain  
Si024120m|PACid:19698654   0.0000000373   33-84   B3 DNA binding domain  
Si024169m|PACid:19701750   0.0000000294   350-415   B3 DNA binding domain  
Si024235m|PACid:19701026   5.89e-21   22-120   B3 DNA binding domain  
  0.0000000000000122   241-345   B3 DNA binding domain  
Si024343m|PACid:19701470   0.000000000000135   24-110   B3 DNA binding domain  
  0.00000000765   170-230   B3 DNA binding domain  
Si024402m|PACid:19698447   0.000000961   295-342   B3 DNA binding domain  
Si024423m|PACid:19700302   1.12e-22   22-121   B3 DNA binding domain  
  0.00000000000000112   241-344   B3 DNA binding domain  
Si024576m|PACid:19699916   5.89e-29   204-304   B3 DNA binding domain  
Si024966m|PACid:19697905   1.1e-21   22-121   B3 DNA binding domain  
  6.28e-16   237-341   B3 DNA binding domain  
Si025114m|PACid:19702484   0.00000765   31-130   B3 DNA binding domain  
Si025187m|PACid:19698582   8.44e-17   296-394   B3 DNA binding domain  
Si025988m|PACid:19706833   1.67e-40   105-241   B3 DNA binding domain  
Si025989m|PACid:19706834   1.67e-40   104-240   B3 DNA binding domain  
Si025990m|PACid:19706835   1.67e-40   104-240   B3 DNA binding domain  
Si027380m|PACid:19707174   1.65e-23   240-340   B3 DNA binding domain  
  4.71e-16   2-76   B3 DNA binding domain  
Si027632m|PACid:19708317   8.24e-29   31-139   B3 DNA binding domain  
Si028829m|PACid:19713738   3.92e-19   459-561   B3 DNA binding domain  
Si028832m|PACid:19713739   3.92e-19   456-558   B3 DNA binding domain  
Si028834m|PACid:19711199   2.88e-21   361-464   B3 DNA binding domain  
Si034525m|PACid:19682948   9.29e-29   116-223   B3 DNA binding domain  
Si035046m|PACid:19683907   5.69e-21   29-126   B3 DNA binding domain  
  1e-19   438-538   B3 DNA binding domain  
  9.22e-19   241-346   B3 DNA binding domain  
Si035266m|PACid:19684352   4.9e-22   27-128   B3 DNA binding domain  
  8.37e-19   400-505   B3 DNA binding domain  
  2.16e-16   240-346   B3 DNA binding domain  
Si035278m|PACid:19684981   5.3e-18   401-505   B3 DNA binding domain  
  0.000000000000049   223-325   B3 DNA binding domain  
Si036864m|PACid:19683695   5.49e-29   28-135   B3 DNA binding domain  
Si036918m|PACid:19680112   2.16e-17   37-135   B3 DNA binding domain  
  0.00000000000000373   161-251   B3 DNA binding domain  
Si037266m|PACid:19683643   2.75e-23   130-227   B3 DNA binding domain  
Si037821m|PACid:19679230   3.92e-18   54-156   B3 DNA binding domain  
Si038567m|PACid:19681552   3.34e-19   28-130   B3 DNA binding domain  
  8.44e-16   232-335   B3 DNA binding domain  
Si039093m|PACid:19679557   9.81e-21   2-85   B3 DNA binding domain  
  2.09e-20   186-289   B3 DNA binding domain  
Si039191m|PACid:19679701   3.73e-21   31-127   B3 DNA binding domain  
  9.61e-20   215-319   B3 DNA binding domain  
  0.00000000000000235   413-510   B3 DNA binding domain  
Si039359m|PACid:19682246   0.00000000000171   112-181   B3 DNA binding domain  
Si039499m|PACid:19680363   1.79e-21   22-120   B3 DNA binding domain  
  8.63e-17   237-340   B3 DNA binding domain  
  0.0000000000000182   434-533   B3 DNA binding domain  
Si039787m|PACid:19685873   0.000000000000883   143-222   B3 DNA binding domain  
  0.000000000000922   37-116   B3 DNA binding domain  
Si039972m|PACid:19680965   1.01e-30   27-126   B3 DNA binding domain  
Si040023m|PACid:19680134   4.12e-23   4-104   B3 DNA binding domain  
  6.67e-17   237-341   B3 DNA binding domain  
 
Weak hits:
Si024046m|PACid:19699369   0.00126   174-238   B3 DNA binding domain  
Si024163m|PACid:19701907   0.0824   178-241   B3 DNA binding domain  
Si024250m|PACid:19698347   0.00628   194-257   B3 DNA binding domain  
Si039493m|PACid:19679765   0.0106   120-157   B3 DNA binding domain  
Si039742m|PACid:19683865   0.0667   231-266   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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