SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


DNA-binding pseudobarrel domain superfamily domain assignments
in
Triticum aestivum 22

Assignment details

(show help)


Triticum aestivum 22 has 237 significant domains in 190 proteins.

     

Sequence ID   Evalue   Region   Family  
Traes_1AL_29F610E15.1   5.89e-29   27-125   B3 DNA binding domain  
Traes_1AL_B14FE48AF.1   2.09e-42   38-184   B3 DNA binding domain  
Traes_1AL_C340A8E74.2   5.1e-24   94-190   B3 DNA binding domain  
Traes_1AS_02E068C7E.2   3.14e-16   134-241   B3 DNA binding domain  
Traes_1BL_53C31B54B.1   8.5e-17   1-68   B3 DNA binding domain  
Traes_1BL_60A56C455.1   1.7e-30   51-162   B3 DNA binding domain  
Traes_1BL_A8FC9D468.1   6.67e-24   132-227   B3 DNA binding domain  
Traes_1BL_B8B4C1FB6.1   1.57e-29   181-291   B3 DNA binding domain  
Traes_1BL_F14523046.1   1.57e-30   51-162   B3 DNA binding domain  
Traes_1BS_03473DC22.2   0.00000000000000373   536-643   B3 DNA binding domain  
Traes_1DL_011784D10.2   0.00000196   2-36   B3 DNA binding domain  
Traes_1DL_1806CFE5F.1   7.46e-25   78-174   B3 DNA binding domain  
Traes_1DL_1806CFE5F1.1   7.46e-25   78-174   B3 DNA binding domain  
Traes_1DL_92BCA55C0.2   1.31e-42   37-182   B3 DNA binding domain  
Traes_1DS_D4E92DDD4.1   0.00000000000000392   219-326   B3 DNA binding domain  
Traes_1DS_EFCC1617E.2   1.9e-23   247-341   B3 DNA binding domain  
Traes_2AL_05ECC440C.2   4.58e-44   139-277   B3 DNA binding domain  
Traes_2AL_25382F498.2   1.44e-28   33-135   B3 DNA binding domain  
Traes_2AL_41E2E66D9.1   1.96e-29   1-89   B3 DNA binding domain  
Traes_2AL_89543BA1A.1   1.31e-44   113-253   B3 DNA binding domain  
Traes_2AL_98457FFEE.1   4.05e-28   24-89   Type II restriction endonuclease effector domain  
Traes_2AL_A7941CB12.2   3.79e-48   29-173   B3 DNA binding domain  
Traes_2AL_B518C11E4.1   3.27e-16   4-97   B3 DNA binding domain  
Traes_2AL_C70217249.1   7.46e-27   106-214   B3 DNA binding domain  
Traes_2AS_70A738C1B.2   0.0000000961   132-180   B3 DNA binding domain  
Traes_2AS_7A127A218.1   5.69e-21   107-201   B3 DNA binding domain  
Traes_2AS_C4FD8E351.2   5.36e-21   284-390   B3 DNA binding domain  
Traes_2AS_F4CEC9849.2   2.62e-21   261-364   B3 DNA binding domain  
Traes_2AS_FC3F1F39A.1   2.75e-24   203-299   B3 DNA binding domain  
Traes_2BL_1AED96909.1   8.63e-45   111-253   B3 DNA binding domain  
Traes_2BL_439C794F5.3   3.66e-29   101-208   B3 DNA binding domain  
Traes_2BL_5ECD53274.2   2.75e-29   33-145   B3 DNA binding domain  
Traes_2BL_889C1F272.2   2.88e-30   110-184   B3 DNA binding domain  
Traes_2BL_A1A475B0F.1   1.14e-29   87-209   B3 DNA binding domain  
Traes_2BL_E322FD546.3   4.45e-44   140-278   B3 DNA binding domain  
Traes_2BS_5B00A8C50.1   3.01e-21   360-463   B3 DNA binding domain  
Traes_2BS_667E8520D.2   1.31e-16   105-192   B3 DNA binding domain  
Traes_2BS_8AD8CD022.1   0.0000000000000824   3-74   B3 DNA binding domain  
Traes_2BS_A61094919.2   5.36e-21   290-396   B3 DNA binding domain  
Traes_2BS_E29F278C4.1   1.08e-19   174-257   B3 DNA binding domain  
Traes_2DL_2128A95BD.1   7.06e-29   32-145   B3 DNA binding domain  
Traes_2DL_2D1980C7B.1   0.00000687   1-40   B3 DNA binding domain  
Traes_2DL_8434C0251.2   3.79e-48   29-173   B3 DNA binding domain  
Traes_2DL_896E50180.1   0.0000000562   101-132   B3 DNA binding domain  
Traes_2DL_A86E54838.2   7.59e-45   63-205   B3 DNA binding domain  
Traes_2DL_BB8506245.2   7.65e-16   115-212   B3 DNA binding domain  
Traes_2DL_E484833C7.1   0.0000000000000196   20-60   Type II restriction endonuclease effector domain  
Traes_2DL_FBE64209C.1   4.45e-44   140-278   B3 DNA binding domain  
Traes_2DS_3E4E3BEFC.2   5.36e-21   284-390   B3 DNA binding domain  
Traes_2DS_6584E8617.2   5.49e-24   205-301   B3 DNA binding domain  
Traes_2DS_896F9F33B.1   5.1e-22   109-203   B3 DNA binding domain  
Traes_2DS_B1C947D2B.1   2.62e-21   261-364   B3 DNA binding domain  
Traes_3AL_1D19F288D.1   4.9e-18   32-130   B3 DNA binding domain  
Traes_3AL_48A1E60D0.1   3.14e-16   2-66   B3 DNA binding domain  
Traes_3AL_561A00448.1   1.96e-41   3-116   B3 DNA binding domain  
Traes_3AL_A30A3C355.1   1.57e-45   11-166   B3 DNA binding domain  
Traes_3AL_C97D62D50.1   1.24e-18   14-108   B3 DNA binding domain  
  0.00000000000353   448-565   B3 DNA binding domain  
  0.00000000167   226-319   B3 DNA binding domain  
Traes_3AL_E34DF2F08.1   0.0000000000981   17-89   B3 DNA binding domain  
Traes_3AS_16C02FAE7.2   4.71e-24   13-109   B3 DNA binding domain  
Traes_3AS_2E5380A2A.1   7.46e-29   2-108   B3 DNA binding domain  
Traes_3AS_82DEC629B.1   5.62e-20   2-87   B3 DNA binding domain  
Traes_3AS_9594B1341.2   3.4e-19   4-99   B3 DNA binding domain  
Traes_3AS_D8AE0A149.1   0.000000000051   1-36   B3 DNA binding domain  
Traes_3AS_E0E90B815.2   5.49e-20   22-122   B3 DNA binding domain  
  0.00000000000000102   250-350   B3 DNA binding domain  
Traes_3B_0F5F08266.1   3.27e-21   2-99   B3 DNA binding domain  
Traes_3B_174B7D5D2.1   0.00000000149   2-34   B3 DNA binding domain  
Traes_3B_2B2B1DEE4.1   4.9e-18   32-130   B3 DNA binding domain  
Traes_3B_2DFE8318A.2   7.26e-18   59-153   B3 DNA binding domain  
  0.00000000000000196   455-568   B3 DNA binding domain  
  0.00000000135   270-363   B3 DNA binding domain  
Traes_3B_30A3E17C6.2   5.49e-24   13-109   B3 DNA binding domain  
Traes_3B_33A7AF677.2   0.0000000145   92-136   B3 DNA binding domain  
Traes_3B_489AC21E2.1   3.01e-41   128-247   B3 DNA binding domain  
Traes_3B_60D375C4E.1   2.35e-36   165-306   B3 DNA binding domain  
Traes_3B_615705174.1   1.26e-39   114-250   B3 DNA binding domain  
Traes_3B_68BFA25F1.1   4.58e-29   166-275   B3 DNA binding domain  
Traes_3B_7B2F14FB6.2   8.44e-21   19-126   B3 DNA binding domain  
Traes_3B_90BE2090B.1   8.76e-30   164-273   B3 DNA binding domain  
Traes_3B_A1A1249AF.1   0.00000000255   7-62   B3 DNA binding domain  
Traes_3B_D9C941D4C.1   1.44e-29   152-249   B3 DNA binding domain  
Traes_3B_DF7E92499.2   7.32e-29   167-274   B3 DNA binding domain  
Traes_3B_DF7E924991.2   7.32e-29   167-274   B3 DNA binding domain  
Traes_3B_EB0905495.1   4.51e-16   16-103   B3 DNA binding domain  
Traes_3B_ED1D67233.1   1.43e-16   22-112   B3 DNA binding domain  
Traes_3B_F6723D5BF.2   5.23e-45   22-177   B3 DNA binding domain  
Traes_3B_F93FBA64A.1   0.00000000139   24-58   B3 DNA binding domain  
Traes_3DL_01DA17F63.1   1.94e-18   14-108   B3 DNA binding domain  
  0.000000000000053   413-525   B3 DNA binding domain  
  0.000000000804   226-320   B3 DNA binding domain  
Traes_3DL_1AAD3E669.1   0.00000000294   9-53   B3 DNA binding domain  
Traes_3DL_1FC3735D9.1   5.89e-21   2-99   B3 DNA binding domain  
Traes_3DL_2C29058E6.1   4.9e-18   33-131   B3 DNA binding domain  
Traes_3DL_5C378695E.1   6.67e-22   2-84   B3 DNA binding domain  
Traes_3DL_734F1498E.1   4.05e-45   11-166   B3 DNA binding domain  
Traes_3DL_BC7A7E056.1   5.2e-23   2-99   B3 DNA binding domain  
Traes_3DL_FA8CAF2B5.3   0.00000000000000687   2-66   B3 DNA binding domain  
Traes_3DS_C03A71108.1   0.000000314   183-270   B3 DNA binding domain  
  0.000804   30-100   B3 DNA binding domain  
Traes_3DS_CC9498D91.1   1.15e-19   6-72   B3 DNA binding domain  
Traes_3DS_ECB844CBC.1   6.28e-24   202-299   B3 DNA binding domain  
Traes_4AL_0CCA685F3.1   0.00000000000000118   93-186   B3 DNA binding domain  
Traes_4AL_1D254E0E4.2   1.96e-23   228-326   B3 DNA binding domain  
Traes_4AL_22D34B3B5.1   0.000000000314   176-282   B3 DNA binding domain  
  0.00471   13-58   B3 DNA binding domain  
Traes_4AL_286F71214.1   0.00000000018   13-57   B3 DNA binding domain  
Traes_4AL_445A910EB.2   1.57e-24   39-142   B3 DNA binding domain  
Traes_4AL_4F2E6EF28.1   2.88e-28   34-128   B3 DNA binding domain  
Traes_4AL_538993FFD.1   1.2e-17   22-119   B3 DNA binding domain  
  0.00000000000000137   188-292   B3 DNA binding domain  
  0.00000000000000177   418-521   B3 DNA binding domain  
Traes_4AL_D883FDB1D.1   1.96e-18   18-116   B3 DNA binding domain  
Traes_4AL_DC57F1ACA.1   2.75e-20   15-114   B3 DNA binding domain  
Traes_4AL_ECC1C3641.2   7.26e-17   455-560   B3 DNA binding domain  
  2.16e-16   12-109   B3 DNA binding domain  
  0.00000000000000608   180-282   B3 DNA binding domain  
Traes_4AS_3698CBB71.1   2.94e-18   127-223   B3 DNA binding domain  
  0.00000000000104   275-361   B3 DNA binding domain  
Traes_4AS_A7507A8AF.2   1.33e-22   136-232   B3 DNA binding domain  
Traes_4AS_B523232F0.1   2.35e-16   12-103   B3 DNA binding domain  
Traes_4BL_1BE7F5B91.2   0.000000000000275   161-247   B3 DNA binding domain  
  0.00000000000667   13-88   B3 DNA binding domain  
Traes_4BL_87A0339AD.2   1.73e-22   136-232   B3 DNA binding domain  
Traes_4BL_D9784B20C1.1   4.58e-29   38-143   B3 DNA binding domain  
Traes_4BL_F6827247E.1   1.83e-18   4-66   B3 DNA binding domain  
Traes_4BS_5D04C29FF.2   2.35e-19   356-445   B3 DNA binding domain  
  8.63e-18   19-113   B3 DNA binding domain  
Traes_4BS_5FECB39FA.2   2.88e-28   34-128   B3 DNA binding domain  
Traes_4BS_9E4FBF387.1   1.96e-17   22-119   B3 DNA binding domain  
  2.55e-16   191-298   B3 DNA binding domain  
Traes_4BS_A021316A5.1   4.12e-22   16-112   B3 DNA binding domain  
Traes_4BS_E46925D04.1   1.71e-22   548-648   B3 DNA binding domain  
  6.47e-20   67-156   B3 DNA binding domain  
Traes_4DL_58F3F93CA.1   1.67e-22   133-229   B3 DNA binding domain  
Traes_4DL_59B1C9052.1   6.8e-30   21-114   B3 DNA binding domain  
Traes_4DL_872A1302F.1   4.05e-30   34-134   B3 DNA binding domain  
Traes_4DL_A56CAE1AB.1   0.00000000000000112   51-144   B3 DNA binding domain  
Traes_4DL_A83084AC1.1   4.19e-29   37-142   B3 DNA binding domain  
Traes_4DL_AEF5AB905.2   1.63e-18   164-263   B3 DNA binding domain  
  0.000000000000706   311-397   B3 DNA binding domain  
Traes_4DL_D0F3E9568.2   4.19e-27   2-104   B3 DNA binding domain  
Traes_4DS_015B029EE.1   0.0000569   82-145   B3 DNA binding domain  
Traes_4DS_12FDFA9F8.2   1.14e-21   16-114   B3 DNA binding domain  
Traes_4DS_352C41430.2   9.22e-22   533-633   B3 DNA binding domain  
  5.1e-19   69-158   B3 DNA binding domain  
Traes_4DS_E6210A614.1   3.92e-28   77-170   B3 DNA binding domain  
Traes_5AL_0A37969AE.2   0.00000000000608   2-98   B3 DNA binding domain  
  0.00000000392   209-303   B3 DNA binding domain  
Traes_5AL_9ACF2EAB6.2   0.000000000000294   279-354   B3 DNA binding domain  
  0.00000184   101-194   B3 DNA binding domain  
  0.00000647   36-76   B3 DNA binding domain  
Traes_5AS_3D6AA43B5.1   3.53e-19   74-171   B3 DNA binding domain  
  1.08e-18   288-392   B3 DNA binding domain  
Traes_5AS_A86138871.1   1.14e-47   118-260   B3 DNA binding domain  
Traes_5AS_B5962A71D.2   0.000000000000844   4-70   B3 DNA binding domain  
Traes_5BL_07CE92C7E.1   0.00000000000000112   51-144   B3 DNA binding domain  
Traes_5BL_80B490E25.1   0.0000000000000765   39-126   B3 DNA binding domain  
  0.000000000000353   374-481   B3 DNA binding domain  
  0.00000000196   199-304   B3 DNA binding domain  
Traes_5BL_9BEB44AEE.2   0.000000000000155   379-456   B3 DNA binding domain  
  0.000000000628   23-106   B3 DNA binding domain  
  0.00000314   132-225   B3 DNA binding domain  
Traes_5BL_B98E347A8.1   1.31e-28   33-129   B3 DNA binding domain  
Traes_5BL_F17BA2960.1   0.00000000000275   239-346   B3 DNA binding domain  
Traes_5BS_03C103140.1   1.12e-19   21-103   B3 DNA binding domain  
Traes_5BS_3F6023CD6.1   1.14e-47   118-260   B3 DNA binding domain  
Traes_5BS_4AD5BD777.2   4.71e-20   303-411   B3 DNA binding domain  
  2.16e-19   155-254   B3 DNA binding domain  
Traes_5BS_580CC3E5F.2   1.73e-21   37-136   B3 DNA binding domain  
  1.06e-20   195-294   B3 DNA binding domain  
  1.96e-17   403-499   B3 DNA binding domain  
Traes_5BS_BE6397B54.2   7.06e-21   195-294   B3 DNA binding domain  
  8.24e-21   37-136   B3 DNA binding domain  
  4.12e-17   403-499   B3 DNA binding domain  
Traes_5DL_CACDF70D6.1   1.16e-28   33-129   B3 DNA binding domain  
Traes_5DL_DC941F119.2   0.00000000122   45-106   B3 DNA binding domain  
  0.00000128   132-225   B3 DNA binding domain  
Traes_5DL_F38B6F5C2.1   5.89e-16   44-132   B3 DNA binding domain  
  0.00000000000149   192-292   B3 DNA binding domain  
  0.000000000981   418-525   B3 DNA binding domain  
Traes_5DS_485F1D5FD.1   4.32e-21   113-212   B3 DNA binding domain  
  7.26e-21   271-370   B3 DNA binding domain  
  1.02e-17   479-575   B3 DNA binding domain  
  9.22e-16   640-743   B3 DNA binding domain  
Traes_5DS_675BEBC7B.2   3.14e-20   303-411   B3 DNA binding domain  
  1.19e-19   155-254   B3 DNA binding domain  
Traes_5DS_7E44031E8.1   2.16e-23   286-386   B3 DNA binding domain  
  1.37e-19   133-228   B3 DNA binding domain  
  2.94e-17   497-598   B3 DNA binding domain  
  8.04e-16   655-756   B3 DNA binding domain  
  0.00000000000000706   33-115   B3 DNA binding domain  
Traes_5DS_8FE90C496.1   0.0000000116   7-46   B3 DNA binding domain  
Traes_5DS_A71D29AE1.1   1.14e-47   118-260   B3 DNA binding domain  
Traes_5DS_BF6C4095F.2   3.53e-21   235-341   B3 DNA binding domain  
  3.14e-18   34-121   B3 DNA binding domain  
Traes_5DS_F59D340A9.2   3.14e-22   154-253   B3 DNA binding domain  
  1.18e-20   14-113   B3 DNA binding domain  
Traes_6AL_3366820511.2   0.00000011   45-142   B3 DNA binding domain  
Traes_6AL_44AA5642C.1   6.41e-29   210-318   B3 DNA binding domain  
Traes_6AL_6FF2ED257.1   0.0000000000000235   55-137   B3 DNA binding domain  
Traes_6AL_78DDE990E.2   0.0000000000000647   289-381   B3 DNA binding domain  
Traes_6AS_10D92215D.2   3.4e-48   120-264   B3 DNA binding domain  
Traes_6AS_39EE7AF68.3   0.00000000392   39-110   B3 DNA binding domain  
Traes_6AS_967D58FB4.1   2.35e-41   121-261   B3 DNA binding domain  
Traes_6BL_82D755454.1   4.05e-17   362-473   B3 DNA binding domain  
Traes_6BS_444DFA94E.2   2.22e-41   60-200   B3 DNA binding domain  
Traes_6BS_9B9661BD3.1   7.46e-18   22-119   B3 DNA binding domain  
  0.000569   190-253   B3 DNA binding domain  
Traes_6BS_BD894AD26.1   6.67e-48   120-264   B3 DNA binding domain  
Traes_6DL_359607E93.1   6.41e-29   209-317   B3 DNA binding domain  
Traes_6DL_52A25BEA4.1   1.28e-18   3-76   B3 DNA binding domain  
Traes_6DS_8BE5BE6AC.1   2.35e-41   121-261   B3 DNA binding domain  
Traes_6DS_F95C12EBB.1   6.15e-48   121-265   B3 DNA binding domain  
Traes_7AL_1415D04BF.1   2.09e-24   2-97   B3 DNA binding domain  
Traes_7AL_C0DB55E98.2   0.0000000000000128   122-211   B3 DNA binding domain  
Traes_7AL_F36D340F4.1   2.22e-42   111-251   B3 DNA binding domain  
Traes_7AS_18B6AEE70.1   0.000000145   9-51   B3 DNA binding domain  
Traes_7AS_52BFFC72F.1   0.0000000000942   10-67   B3 DNA binding domain  
Traes_7AS_582E3076D.1   9.68e-43   68-208   B3 DNA binding domain  
Traes_7AS_A4B5D1816.1   2.55e-22   10-105   B3 DNA binding domain  
Traes_7AS_B71C74E86.1   4.51e-17   422-515   B3 DNA binding domain  
  8.44e-17   168-270   B3 DNA binding domain  
  2.75e-16   21-115   B3 DNA binding domain  
Traes_7BL_056959446.1   6.87e-16   154-248   B3 DNA binding domain  
  0.00000000000139   1-91   B3 DNA binding domain  
Traes_7BL_6183FA9D4.1   1.16e-16   122-210   B3 DNA binding domain  
Traes_7BL_66296695F.1   5.1e-48   29-173   B3 DNA binding domain  
Traes_7BL_AE9F7CD3F.2   0.000000334   29-113   B3 DNA binding domain  
Traes_7BL_B680A7DE0.1   3.14e-21   42-184   B3 DNA binding domain  
Traes_7BS_3FD792335.1   2.49e-43   60-199   B3 DNA binding domain  
Traes_7BS_9D1E05CB7.1   1.96e-25   10-107   B3 DNA binding domain  
Traes_7BS_F44A273F8.2   1.44e-41   63-203   B3 DNA binding domain  
Traes_7DL_343A252DC.1   2.22e-42   108-248   B3 DNA binding domain  
Traes_7DL_C89614A4D.1   6.8e-48   29-173   B3 DNA binding domain  
Traes_7DS_1948388F8.2   1.44e-41   93-233   B3 DNA binding domain  
Traes_7DS_7375BED72.2   2.49e-43   82-221   B3 DNA binding domain  
Traes_7DS_A234A13E1.2   1.79e-24   131-228   B3 DNA binding domain  
Traes_7DS_C57224E6E.1   6.08e-23   163-261   B3 DNA binding domain  
 
Weak hits:
Traes_1DS_3C8E0F31A.1   0.000153   198-266   B3 DNA binding domain  
  0.00177   19-104   B3 DNA binding domain  
Traes_2BL_76F11E856.1   0.000349   5-34   B3 DNA binding domain  
Traes_3B_744EDC56C.1   0.000569   14-65   B3 DNA binding domain  
Traes_3B_BF8C4A762.2   0.00053   7-44   B3 DNA binding domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a DNA-binding pseudobarrel domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]