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DNA-binding pseudobarrel domain superfamily domain assignments
in
Oryza punctata 22

Assignment details

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Oryza punctata 22 has 172 significant domains in 112 proteins.

     

Sequence ID   Evalue   Region   Family  
OPUNC01G02240.1   1.7e-29   156-267   B3 DNA binding domain  
OPUNC01G02270.1   1.31e-20   172-274   B3 DNA binding domain  
OPUNC01G08200.1   0.000000922   197-302   B3 DNA binding domain  
OPUNC01G08290.1   4.32e-18   157-237   B3 DNA binding domain  
OPUNC01G08500.1   4.05e-37   51-189   B3 DNA binding domain  
OPUNC01G25930.1   2.49e-43   146-286   B3 DNA binding domain  
OPUNC01G26150.1   1e-16   26-118   B3 DNA binding domain  
  0.000000000000804   220-314   B3 DNA binding domain  
OPUNC01G26150.2   8.04e-17   7-99   B3 DNA binding domain  
  0.00000000165   207-283   B3 DNA binding domain  
OPUNC01G26150.3   8.83e-17   7-99   B3 DNA binding domain  
  0.000000000000706   201-295   B3 DNA binding domain  
OPUNC01G26250.1   0.0000961   259-322   B3 DNA binding domain  
OPUNC01G27280.1   2.88e-30   209-304   B3 DNA binding domain  
OPUNC01G28450.1   1.31e-17   172-270   B3 DNA binding domain  
OPUNC01G29180.1   8.04e-23   292-388   B3 DNA binding domain  
  9.61e-21   17-125   B3 DNA binding domain  
OPUNC01G29200.1   2.35e-20   7-116   B3 DNA binding domain  
OPUNC01G30260.1   8.37e-47   175-330   B3 DNA binding domain  
OPUNC01G30260.2   9.94e-47   175-330   B3 DNA binding domain  
OPUNC01G39820.1   6.67e-22   77-173   B3 DNA binding domain  
  0.0000000000000589   582-674   B3 DNA binding domain  
OPUNC01G40170.1   0.0000184   537-581   B3 DNA binding domain  
OPUNC01G40220.1   0.0000184   537-581   B3 DNA binding domain  
OPUNC01G41560.1   3.66e-40   121-258   B3 DNA binding domain  
OPUNC02G02660.1   1.28e-41   98-238   B3 DNA binding domain  
OPUNC02G04120.1   1.44e-48   124-268   B3 DNA binding domain  
OPUNC02G04120.2   1.44e-48   124-268   B3 DNA binding domain  
OPUNC02G06600.1   1.57e-18   170-262   B3 DNA binding domain  
  0.00000000000000196   12-115   B3 DNA binding domain  
OPUNC02G13890.1   3.92e-17   27-126   B3 DNA binding domain  
OPUNC02G13900.1   4.51e-16   27-132   B3 DNA binding domain  
OPUNC02G18520.1   1.18e-43   119-258   B3 DNA binding domain  
OPUNC02G18520.2   1.18e-43   119-258   B3 DNA binding domain  
OPUNC02G20840.1   9.42e-18   273-366   B3 DNA binding domain  
  0.0000000000161   853-942   B3 DNA binding domain  
OPUNC02G22610.1   8.89e-29   116-222   B3 DNA binding domain  
OPUNC02G25780.1   5.62e-29   94-201   B3 DNA binding domain  
OPUNC03G01540.1   6.8e-29   34-125   B3 DNA binding domain  
OPUNC03G06010.1   9.81e-22   128-219   B3 DNA binding domain  
OPUNC03G07840.3   2.35e-19   13-116   B3 DNA binding domain  
  1.02e-16   151-242   B3 DNA binding domain  
OPUNC03G07840.4   2.35e-19   13-116   B3 DNA binding domain  
  1.02e-16   151-242   B3 DNA binding domain  
OPUNC03G23950.1   8.83e-23   23-121   B3 DNA binding domain  
  5.49e-17   434-537   B3 DNA binding domain  
  0.00000000000824   257-342   B3 DNA binding domain  
OPUNC03G23960.1   8.44e-23   543-641   B3 DNA binding domain  
  5.69e-20   25-125   B3 DNA binding domain  
  2.75e-18   223-329   B3 DNA binding domain  
  4.97e-16   446-528   B3 DNA binding domain  
  0.00000000000000112   766-870   B3 DNA binding domain  
OPUNC03G23990.1   4.32e-24   265-367   B3 DNA binding domain  
  5.89e-20   48-148   B3 DNA binding domain  
  7.32e-19   451-558   B3 DNA binding domain  
OPUNC03G24010.1   1.86e-22   25-125   B3 DNA binding domain  
  4.97e-19   243-344   B3 DNA binding domain  
  8.11e-19   452-560   B3 DNA binding domain  
OPUNC03G24050.1   3.14e-23   194-292   B3 DNA binding domain  
  4.51e-23   72-174   B3 DNA binding domain  
  2.35e-22   492-589   B3 DNA binding domain  
  2.55e-18   684-782   B3 DNA binding domain  
  0.00000000000628   381-465   B3 DNA binding domain  
OPUNC03G24050.2   2.94e-23   163-261   B3 DNA binding domain  
  2.16e-22   461-558   B3 DNA binding domain  
  2.35e-18   653-751   B3 DNA binding domain  
  0.00000000000000961   72-150   B3 DNA binding domain  
  0.00000000000589   350-434   B3 DNA binding domain  
OPUNC03G24050.3   5.1e-23   25-122   B3 DNA binding domain  
  5.49e-19   217-315   B3 DNA binding domain  
OPUNC03G24050.4   5.1e-23   25-122   B3 DNA binding domain  
  5.49e-19   217-315   B3 DNA binding domain  
OPUNC03G24100.1   3.73e-22   28-128   B3 DNA binding domain  
  1.96e-16   433-501   B3 DNA binding domain  
  0.0000000000000569   240-336   B3 DNA binding domain  
  0.00000392   706-731   B3 DNA binding domain  
OPUNC04G06860.1   3.34e-18   136-235   B3 DNA binding domain  
  0.00000000000000216   314-415   B3 DNA binding domain  
  0.0000000000000159   19-116   B3 DNA binding domain  
OPUNC04G06870.1   7.26e-18   132-231   B3 DNA binding domain  
  1.47e-16   305-411   B3 DNA binding domain  
  8.63e-16   17-116   B3 DNA binding domain  
OPUNC04G06890.1   0.00000000000000608   133-218   B3 DNA binding domain  
  0.00000000000000746   19-119   B3 DNA binding domain  
  0.000000000000053   261-364   B3 DNA binding domain  
OPUNC04G08500.1   9.22e-16   74-158   B3 DNA binding domain  
OPUNC04G11520.1   3.01e-44   117-255   B3 DNA binding domain  
OPUNC04G11520.2   3.01e-44   117-255   B3 DNA binding domain  
OPUNC04G16630.1   1.31e-28   119-224   B3 DNA binding domain  
OPUNC04G20430.1   2.22e-23   108-186   B3 DNA binding domain  
OPUNC04G26100.1   4.19e-45   212-351   B3 DNA binding domain  
OPUNC04G26690.1   8.11e-48   119-263   B3 DNA binding domain  
OPUNC04G27110.1   1.57e-18   388-485   B3 DNA binding domain  
OPUNC04G27110.2   1.06e-18   289-386   B3 DNA binding domain  
OPUNC04G27120.1   4.97e-19   296-392   B3 DNA binding domain  
OPUNC04G28180.1   5.89e-28   107-230   B3 DNA binding domain  
OPUNC05G07400.1   0.00000147   265-365   B3 DNA binding domain  
OPUNC05G08770.1   0.00000883   104-140   B3 DNA binding domain  
OPUNC05G18160.1   1.84e-23   132-228   B3 DNA binding domain  
OPUNC05G20300.1   1.22e-42   120-268   B3 DNA binding domain  
OPUNC05G22370.1   1.96e-28   200-316   B3 DNA binding domain  
OPUNC05G23380.1   2.88e-43   136-257   B3 DNA binding domain  
OPUNC05G23400.1   2.88e-43   136-257   B3 DNA binding domain  
OPUNC06G00440.1   1.7e-27   30-132   B3 DNA binding domain  
OPUNC06G00610.1   1.57e-20   52-153   B3 DNA binding domain  
OPUNC06G05940.1   2.49e-44   117-256   B3 DNA binding domain  
OPUNC06G19660.1   1.31e-17   135-239   B3 DNA binding domain  
  0.000000000000569   311-405   B3 DNA binding domain  
  0.000000392   10-120   B3 DNA binding domain  
OPUNC06G22430.1   2.49e-48   119-263   B3 DNA binding domain  
OPUNC06G22960.1   9.42e-29   123-228   B3 DNA binding domain  
OPUNC06G22960.2   9.42e-29   123-228   B3 DNA binding domain  
OPUNC06G22960.3   9.42e-29   123-228   B3 DNA binding domain  
OPUNC06G24250.1   2.75e-43   139-279   B3 DNA binding domain  
OPUNC07G05190.1   5.1e-16   17-128   B3 DNA binding domain  
OPUNC07G05200.1   5.62e-17   125-232   B3 DNA binding domain  
  0.00000000000000235   489-590   B3 DNA binding domain  
OPUNC07G05270.1   0.00000301   1-38   B3 DNA binding domain  
OPUNC07G05280.1   0.0000451   1-36   B3 DNA binding domain  
OPUNC07G09160.1   2.88e-28   145-247   B3 DNA binding domain  
OPUNC07G17640.1   2.62e-19   450-552   B3 DNA binding domain  
OPUNC07G17640.2   2.49e-19   450-552   B3 DNA binding domain  
OPUNC07G24850.1   5.36e-17   368-463   B3 DNA binding domain  
OPUNC07G24850.2   5.62e-17   350-445   B3 DNA binding domain  
OPUNC07G24850.3   5.76e-17   368-463   B3 DNA binding domain  
OPUNC08G00140.1   0.0000188   244-300   B3 DNA binding domain  
OPUNC08G03290.1   2.09e-28   61-162   B3 DNA binding domain  
OPUNC08G08370.1   0.00000000687   282-331   B3 DNA binding domain  
OPUNC08G08440.1   0.0000012   338-387   B3 DNA binding domain  
OPUNC08G09920.1   1.83e-18   411-517   B3 DNA binding domain  
  3.53e-18   607-707   B3 DNA binding domain  
  0.00000000000216   204-304   B3 DNA binding domain  
  0.0000116   12-83   B3 DNA binding domain  
OPUNC08G18850.1   4.58e-42   120-259   B3 DNA binding domain  
OPUNC08G18850.2   4.84e-42   120-259   B3 DNA binding domain  
OPUNC08G18850.3   4.58e-42   87-226   B3 DNA binding domain  
OPUNC10G11840.1   2.22e-28   127-233   B3 DNA binding domain  
OPUNC10G11840.2   2.22e-28   127-233   B3 DNA binding domain  
OPUNC10G15350.1   3.4e-26   102-190   B3 DNA binding domain  
  1.57e-16   34-102   B3 DNA binding domain  
OPUNC10G16940.1   3.27e-30   34-126   B3 DNA binding domain  
OPUNC11G03320.1   3.01e-28   34-128   B3 DNA binding domain  
OPUNC11G05820.1   9.81e-26   246-346   B3 DNA binding domain  
  3.14e-20   3-84   B3 DNA binding domain  
OPUNC11G05830.1   5.62e-24   308-408   B3 DNA binding domain  
  3.79e-22   51-147   B3 DNA binding domain  
OPUNC11G12650.1   3.14e-41   148-282   B3 DNA binding domain  
OPUNC11G12650.2   3.34e-41   148-282   B3 DNA binding domain  
OPUNC11G12650.3   3.34e-41   119-253   B3 DNA binding domain  
OPUNC11G12650.4   3.43e-41   148-282   B3 DNA binding domain  
OPUNC11G13190.1   3.27e-16   248-356   B3 DNA binding domain  
  0.0000000000235   13-116   B3 DNA binding domain  
OPUNC11G13210.1   3.79e-19   572-671   B3 DNA binding domain  
OPUNC11G13210.2   3.4e-19   514-613   B3 DNA binding domain  
OPUNC12G03300.1   1.44e-30   33-127   B3 DNA binding domain  
OPUNC12G10620.1   2.85e-41   142-278   B3 DNA binding domain  
OPUNC12G15790.1   5.49e-22   633-732   B3 DNA binding domain  
  1.41e-19   1336-1437   B3 DNA binding domain  
  4.32e-18   504-610   B3 DNA binding domain  
  4.71e-18   843-942   B3 DNA binding domain  
  1.41e-17   994-1100   B3 DNA binding domain  
  1.96e-17   1115-1218   B3 DNA binding domain  
  8.63e-16   60-138   B3 DNA binding domain  
  0.0000000000000804   175-270   B3 DNA binding domain  
  0.00000000186   381-461   B3 DNA binding domain  
OPUNC12G15810.1   4.9e-16   22-113   B3 DNA binding domain  
  0.0000108   228-286   B3 DNA binding domain  
OPUNC12G15860.1   4.71e-18   244-347   B3 DNA binding domain  
  4.9e-17   24-124   B3 DNA binding domain  
  0.00000000216   385-468   B3 DNA binding domain  
  0.000000392   524-623   B3 DNA binding domain  
OPUNC12G16920.1   7.06e-49   117-261   B3 DNA binding domain  
 
Weak hits:
OPUNC02G04200.1   0.0251   105-169   B3 DNA binding domain  
OPUNC03G34050.1   0.0112   42-106   B3 DNA binding domain  
OPUNC05G07520.1   0.000165   282-329   B3 DNA binding domain  
OPUNC05G07530.1   0.0863   42-88   B3 DNA binding domain  
OPUNC08G08630.1   0.0349   213-276   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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