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DNA-binding pseudobarrel domain superfamily domain assignments
in
Arabidopsis lyrata

Assignment details

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Arabidopsis lyrata has 225 significant domains in 140 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Araly1|311675|fgenesh1_pm.C_scaffold_1000455   2.94e-17   134-260   B3 DNA binding domain  
jgi|Araly1|311676|fgenesh1_pm.C_scaffold_1000456   0.00000000000000114   192-314   B3 DNA binding domain  
jgi|Araly1|312638|fgenesh1_pm.C_scaffold_1001418   8.83e-25   4-102   B3 DNA binding domain  
jgi|Araly1|314370|fgenesh1_pm.C_scaffold_1003150   1.35e-19   25-122   B3 DNA binding domain  
jgi|Araly1|317478|fgenesh1_pm.C_scaffold_3000494   7.65e-22   22-118   B3 DNA binding domain  
  0.00000141   250-328   B3 DNA binding domain  
jgi|Araly1|317484|fgenesh1_pm.C_scaffold_3000500   1.45e-19   8-104   B3 DNA binding domain  
jgi|Araly1|317904|fgenesh1_pm.C_scaffold_3000920   6.47e-20   144-246   B3 DNA binding domain  
  2.94e-19   9-112   B3 DNA binding domain  
  8.83e-17   248-350   B3 DNA binding domain  
jgi|Araly1|318465|fgenesh1_pm.C_scaffold_3001481   1.1e-19   16-121   B3 DNA binding domain  
  1.06e-16   198-289   B3 DNA binding domain  
jgi|Araly1|319704|fgenesh1_pm.C_scaffold_3002720   2.62e-29   124-234   B3 DNA binding domain  
jgi|Araly1|320274|fgenesh1_pm.C_scaffold_4000331   6.67e-22   183-279   B3 DNA binding domain  
  1.04e-21   31-123   B3 DNA binding domain  
  7.26e-20   572-659   B3 DNA binding domain  
  0.0000000412   490-551   B3 DNA binding domain  
  0.0785   345-376   B3 DNA binding domain  
jgi|Araly1|321098|fgenesh1_pm.C_scaffold_4001155   0.00000000000392   198-310   B3 DNA binding domain  
jgi|Araly1|321705|fgenesh1_pm.C_scaffold_4001762   0.0000000000000569   62-166   B3 DNA binding domain  
jgi|Araly1|322150|fgenesh1_pm.C_scaffold_4002207   0.000000143   7-47   B3 DNA binding domain  
  0.0000314   119-194   B3 DNA binding domain  
jgi|Araly1|323305|fgenesh1_pm.C_scaffold_5000849   0.0000000000000353   14-108   B3 DNA binding domain  
  0.0000011   180-261   B3 DNA binding domain  
jgi|Araly1|328561|fgenesh1_pm.C_scaffold_7000788   1.57e-19   10-111   B3 DNA binding domain  
  1.84e-17   269-369   B3 DNA binding domain  
  0.00000392   176-236   B3 DNA binding domain  
jgi|Araly1|330612|fgenesh1_pm.C_scaffold_7002839   0.000000000000147   252-377   B3 DNA binding domain  
jgi|Araly1|330738|fgenesh1_pm.C_scaffold_8000081   7.46e-18   15-121   B3 DNA binding domain  
  0.000000000000255   200-286   B3 DNA binding domain  
jgi|Araly1|331130|fgenesh1_pm.C_scaffold_8000473   3.92e-24   103-200   B3 DNA binding domain  
jgi|Araly1|331317|fgenesh1_pm.C_scaffold_8000660   0.00000000000000373   166-290   B3 DNA binding domain  
jgi|Araly1|332063|fgenesh1_pm.C_scaffold_8001406   5.1e-20   9-104   B3 DNA binding domain  
  0.0000051   201-283   B3 DNA binding domain  
jgi|Araly1|335174|fgenesh1_pg.C_scaffold_1001739   6.15e-41   116-269   B3 DNA binding domain  
jgi|Araly1|336503|fgenesh1_pg.C_scaffold_1003068   4.71e-32   81-206   B3 DNA binding domain  
jgi|Araly1|339541|fgenesh1_pg.C_scaffold_2001640   5.1e-16   16-103   B3 DNA binding domain  
jgi|Araly1|342636|fgenesh1_pg.C_scaffold_3002399   2.75e-22   575-669   B3 DNA binding domain  
jgi|Araly1|344050|fgenesh1_pg.C_scaffold_4000392   3.14e-20   150-246   B3 DNA binding domain  
  8.44e-20   270-365   B3 DNA binding domain  
  1.33e-19   9-109   B3 DNA binding domain  
  2.94e-16   447-541   B3 DNA binding domain  
jgi|Araly1|347288|fgenesh1_pg.C_scaffold_5000680   0.000000000118   97-206   B3 DNA binding domain  
jgi|Araly1|348285|fgenesh1_pg.C_scaffold_5001677   0.000000011   61-134   B3 DNA binding domain  
  0.000000608   3-54   B3 DNA binding domain  
jgi|Araly1|349241|fgenesh1_pg.C_scaffold_5002633   4.32e-40   113-257   B3 DNA binding domain  
jgi|Araly1|350906|fgenesh1_pg.C_scaffold_6001499   1.67e-20   14-118   B3 DNA binding domain  
  6.28e-20   215-305   B3 DNA binding domain  
jgi|Araly1|353664|fgenesh1_pg.C_scaffold_7000837   1.1e-21   205-304   B3 DNA binding domain  
  4.51e-20   574-673   B3 DNA binding domain  
  8.24e-18   700-798   B3 DNA binding domain  
  0.0000000000000569   8-95   B3 DNA binding domain  
  0.000000000000102   450-533   B3 DNA binding domain  
  0.0000000000106   92-173   B3 DNA binding domain  
jgi|Araly1|355494|fgenesh1_pg.C_scaffold_7002667   1.9e-17   7-105   B3 DNA binding domain  
  2.16e-17   368-463   B3 DNA binding domain  
  0.0000000334   250-329   B3 DNA binding domain  
  0.0726   139-187   B3 DNA binding domain  
jgi|Araly1|470180|fgenesh2_kg.1__134__AT1G01030.1   7.19e-30   49-141   B3 DNA binding domain  
jgi|Araly1|472210|fgenesh2_kg.1__2164__AT1G19850.1   2.22e-45   152-288   B3 DNA binding domain  
jgi|Araly1|473040|fgenesh2_kg.1__2994__AT1G28300.1   5.69e-19   170-269   B3 DNA binding domain  
jgi|Araly1|473256|fgenesh2_kg.1__3210__AT1G30330.2   1.7e-48   114-258   B3 DNA binding domain  
jgi|Araly1|473386|fgenesh2_kg.1__3340__AT1G32030.1   0.00000000000235   195-311   B3 DNA binding domain  
jgi|Araly1|473654|fgenesh2_kg.1__3608__AT1G35540.1   1.31e-31   124-249   B3 DNA binding domain  
jgi|Araly1|473790|fgenesh2_kg.1__3744__AT4G03170.1   0.00000294   141-212   B3 DNA binding domain  
jgi|Araly1|474200|fgenesh2_kg.1__4154__AT1G50680.1   1.44e-27   155-256   B3 DNA binding domain  
jgi|Araly1|474227|fgenesh2_kg.1__4181__AT1G51120.1   6.93e-27   177-275   B3 DNA binding domain  
jgi|Araly1|475338|fgenesh2_kg.2__468__AT1G59750.1   2.35e-44   113-253   B3 DNA binding domain  
jgi|Araly1|476011|fgenesh2_kg.2__1141__AT1G68840.1   2.49e-32   185-291   B3 DNA binding domain  
jgi|Araly1|479415|fgenesh2_kg.3__2116__AT3G18990.1   4.32e-22   237-338   B3 DNA binding domain  
  5.1e-22   3-97   B3 DNA binding domain  
jgi|Araly1|479433|fgenesh2_kg.3__2134__AT3G19184.1   5.1e-24   120-218   B3 DNA binding domain  
jgi|Araly1|480001|fgenesh2_kg.3__2702__AT3G24850.1   1.39e-17   139-262   B3 DNA binding domain  
jgi|Araly1|480792|fgenesh2_kg.3__3493__AT2G16210.1   1.69e-19   14-120   B3 DNA binding domain  
  0.0000000000000216   197-288   B3 DNA binding domain  
jgi|Araly1|481325|fgenesh2_kg.4__385__AT2G24650.1   1.28e-20   1356-1455   B3 DNA binding domain  
  3.34e-20   1249-1346   B3 DNA binding domain  
  6.93e-20   127-223   B3 DNA binding domain  
  1.37e-19   924-1020   B3 DNA binding domain  
  1.26e-18   798-896   B3 DNA binding domain  
  1.49e-18   657-742   B3 DNA binding domain  
  7.46e-18   261-357   B3 DNA binding domain  
  1.53e-17   1503-1604   B3 DNA binding domain  
  2.75e-17   385-466   B3 DNA binding domain  
  1.29e-16   5-98   B3 DNA binding domain  
  1.96e-16   1046-1134   B3 DNA binding domain  
  0.00000000000049   1139-1222   B3 DNA binding domain  
jgi|Araly1|481671|fgenesh2_kg.4__731__AT2G28350.1   4.58e-29   113-218   B3 DNA binding domain  
jgi|Araly1|482495|fgenesh2_kg.4__1555__AT2G35310.1   4.9e-20   15-119   B3 DNA binding domain  
  1.31e-16   193-287   B3 DNA binding domain  
jgi|Araly1|483854|fgenesh2_kg.4__2914__AT2G46870.1   6.02e-30   33-128   B3 DNA binding domain  
jgi|Araly1|484335|fgenesh2_kg.5__327__AT3G25730.1   1.23e-30   177-284   B3 DNA binding domain  
jgi|Araly1|484455|fgenesh2_kg.5__447__AT3G26790.1   1.12e-22   93-195   B3 DNA binding domain  
jgi|Araly1|486704|fgenesh2_kg.5__2696__AT3G61970.1   2.09e-32   20-131   B3 DNA binding domain  
jgi|Araly1|487432|fgenesh2_kg.6__566__AT5G06250.2   4.84e-31   43-157   B3 DNA binding domain  
jgi|Araly1|488674|fgenesh2_kg.6__1808__AT5G18090.1   4.51e-19   14-116   B3 DNA binding domain  
  1.43e-17   196-286   B3 DNA binding domain  
jgi|Araly1|488981|fgenesh2_kg.6__2115__AT5G20730.1   1.57e-42   117-256   B3 DNA binding domain  
jgi|Araly1|489405|fgenesh2_kg.6__2539__AT5G25475.2   3.34e-16   14-114   B3 DNA binding domain  
  0.0000000000549   178-266   B3 DNA binding domain  
jgi|Araly1|491574|fgenesh2_kg.7__1007__AT4G31630.1   1.55e-20   45-149   B3 DNA binding domain  
  0.000000392   185-258   B3 DNA binding domain  
jgi|Araly1|491577|fgenesh2_kg.7__1010__AT4G31610.1   2.16e-19   271-378   B3 DNA binding domain  
  1.1e-16   152-248   B3 DNA binding domain  
  0.000000000432   26-89   B3 DNA binding domain  
jgi|Araly1|493698|fgenesh2_kg.7__3131__AT5G37020.1   7.72e-48   112-255   B3 DNA binding domain  
jgi|Araly1|493975|fgenesh2_kg.7__3408__AT4G03170.1   1.84e-17   123-226   B3 DNA binding domain  
jgi|Araly1|496153|fgenesh2_kg.8__1969__AT5G60140.1   8.04e-19   8-107   B3 DNA binding domain  
  0.000000000106   192-286   B3 DNA binding domain  
jgi|Araly1|496192|fgenesh2_kg.8__2008__AT5G60450.1   7.46e-42   166-281   B3 DNA binding domain  
jgi|Araly1|496902|fgenesh2_kg.8__2718__AT5G66980.1   4.32e-21   11-109   B3 DNA binding domain  
  0.0000000000000922   214-302   B3 DNA binding domain  
jgi|Araly1|497170|fgenesh2_kg.26__5__AT5G24050.1   0.000000000000188   186-289   B3 DNA binding domain  
jgi|Araly1|497309|fgenesh2_kg.181__3__AT2G46870.1   6.15e-30   34-129   B3 DNA binding domain  
jgi|Araly1|497432|fgenesh2_kg.457__2__AT2G35310.1   4.12e-20   15-119   B3 DNA binding domain  
  1.96e-16   193-287   B3 DNA binding domain  
jgi|Araly1|856135|Al_scaffold_0022_1   9.42e-17   30-124   B3 DNA binding domain  
jgi|Araly1|857250|Al_scaffold_0007_749   2.55e-20   20-114   B3 DNA binding domain  
  4.32e-19   224-320   B3 DNA binding domain  
jgi|Araly1|858253|Al_scaffold_0007_1752   1.7e-38   106-243   B3 DNA binding domain  
jgi|Araly1|859566|Al_scaffold_0007_3065   6.47e-18   7-105   B3 DNA binding domain  
  0.00275   145-200   B3 DNA binding domain  
jgi|Araly1|861370|Al_scaffold_0006_879   4.12e-20   15-120   B3 DNA binding domain  
  1.22e-18   205-300   B3 DNA binding domain  
jgi|Araly1|862948|Al_scaffold_0006_2457   3.14e-16   14-114   B3 DNA binding domain  
  0.00000000000353   175-267   B3 DNA binding domain  
jgi|Araly1|866407|Al_scaffold_0005_1886   0.000000000628   36-96   B3 DNA binding domain  
jgi|Araly1|868324|Al_scaffold_0004_487   0.0000000216   85-190   B3 DNA binding domain  
jgi|Araly1|868325|Al_scaffold_0004_488   5.3e-20   677-775   B3 DNA binding domain  
  8.83e-20   261-355   B3 DNA binding domain  
  4.12e-17   384-479   B3 DNA binding domain  
  6.87e-16   530-628   B3 DNA binding domain  
  0.00000000000196   122-207   B3 DNA binding domain  
  0.00000216   7-47   B3 DNA binding domain  
jgi|Araly1|874150|Al_scaffold_0003_2791   2.55e-17   212-335   B3 DNA binding domain  
jgi|Araly1|874794|Al_scaffold_0003_3435   0.00000000000137   32-98   B3 DNA binding domain  
  0.000000373   162-234   B3 DNA binding domain  
jgi|Araly1|878732|Al_scaffold_0001_499   0.0000000922   95-158   B3 DNA binding domain  
jgi|Araly1|881733|Al_scaffold_0001_3500   1.1e-27   119-235   B3 DNA binding domain  
jgi|Araly1|881982|Al_scaffold_0001_3749   4.97e-29   118-250   B3 DNA binding domain  
jgi|Araly1|886032|Al_scaffold_0008_2296   1.79e-23   118-215   B3 DNA binding domain  
jgi|Araly1|888314|scaffold_101108.1   0.00000000000000863   19-121   B3 DNA binding domain  
jgi|Araly1|888685|scaffold_101479.1   8.24e-33   186-293   B3 DNA binding domain  
jgi|Araly1|890070|scaffold_102864.1   2.35e-20   742-840   B3 DNA binding domain  
  3.53e-19   263-364   B3 DNA binding domain  
  8.63e-19   627-725   B3 DNA binding domain  
  4.9e-18   11-111   B3 DNA binding domain  
  7.85e-18   448-548   B3 DNA binding domain  
  0.00000000000000608   151-249   B3 DNA binding domain  
  0.0000000000000275   899-997   B3 DNA binding domain  
jgi|Araly1|890147|scaffold_102941.1   5.1e-32   191-294   B3 DNA binding domain  
jgi|Araly1|891847|scaffold_104641.1   1.71e-22   122-223   B3 DNA binding domain  
jgi|Araly1|891945|scaffold_104739.1   0.000000000942   12-117   B3 DNA binding domain  
jgi|Araly1|892188|scaffold_104982.1   0.00000000000000667   16-121   B3 DNA binding domain  
jgi|Araly1|892189|scaffold_104983.1   0.00000000000471   14-114   B3 DNA binding domain  
jgi|Araly1|893748|scaffold_200822.1   0.00000000000000451   3-96   B3 DNA binding domain  
jgi|Araly1|895674|scaffold_202748.1   1.31e-27   113-224   B3 DNA binding domain  
jgi|Araly1|895766|scaffold_202840.1   0.0000000000314   113-225   B3 DNA binding domain  
jgi|Araly1|897360|scaffold_301330.1   6.15e-31   25-139   B3 DNA binding domain  
jgi|Araly1|898397|scaffold_302367.1   1.73e-21   84-183   B3 DNA binding domain  
  2.35e-16   245-325   B3 DNA binding domain  
jgi|Araly1|899054|scaffold_303024.1   5.89e-18   211-335   B3 DNA binding domain  
jgi|Araly1|900237|scaffold_304207.1   0.0000000000173   14-110   B3 DNA binding domain  
jgi|Araly1|900280|scaffold_304250.1   0.00000000275   16-65   B3 DNA binding domain  
jgi|Araly1|901025|scaffold_400526.1   0.00000000000000108   78-180   B3 DNA binding domain  
  0.00000000000114   232-318   B3 DNA binding domain  
jgi|Araly1|901028|scaffold_400529.1   7.06e-20   45-147   B3 DNA binding domain  
  3.53e-16   158-250   B3 DNA binding domain  
  0.000000000171   305-400   B3 DNA binding domain  
jgi|Araly1|901047|scaffold_400548.1   2.35e-22   339-440   B3 DNA binding domain  
  1.02e-21   194-295   B3 DNA binding domain  
  7.65e-20   490-590   B3 DNA binding domain  
  2.35e-19   67-165   B3 DNA binding domain  
jgi|Araly1|901059|scaffold_400560.1   0.000000112   38-88   B3 DNA binding domain  
jgi|Araly1|901062|scaffold_400563.1   1.45e-22   252-353   B3 DNA binding domain  
  2.35e-21   393-494   B3 DNA binding domain  
  2.55e-19   125-223   B3 DNA binding domain  
  6.47e-17   545-626   B3 DNA binding domain  
jgi|Araly1|901324|scaffold_400825.1   8.04e-19   227-326   B3 DNA binding domain  
  0.0000000000000922   5-83   B3 DNA binding domain  
  0.000000000000235   110-196   B3 DNA binding domain  
jgi|Araly1|901333|scaffold_400834.1   0.000000000314   460-525   B3 DNA binding domain  
jgi|Araly1|901447|scaffold_400948.1   1.2e-20   127-224   B3 DNA binding domain  
  1.88e-20   3-101   B3 DNA binding domain  
  0.000000000129   259-333   B3 DNA binding domain  
jgi|Araly1|901974|scaffold_401475.1   0.0000000334   19-119   B3 DNA binding domain  
jgi|Araly1|902034|scaffold_401535.1   2.22e-19   297-395   B3 DNA binding domain  
jgi|Araly1|902176|scaffold_401677.1   0.000000049   59-146   B3 DNA binding domain  
jgi|Araly1|902206|scaffold_401707.1   0.000000000804   149-274   B3 DNA binding domain  
jgi|Araly1|902223|scaffold_401724.1   0.000000000053   151-278   B3 DNA binding domain  
jgi|Araly1|902266|scaffold_401767.1   0.00000000000726   180-285   B3 DNA binding domain  
jgi|Araly1|902323|scaffold_401824.1   0.00000000000294   179-290   B3 DNA binding domain  
jgi|Araly1|902476|scaffold_401977.1   3.79e-42   147-269   B3 DNA binding domain  
jgi|Araly1|902720|scaffold_402221.1   6.8e-31   35-143   B3 DNA binding domain  
jgi|Araly1|904120|scaffold_403621.1   1.03e-38   109-253   B3 DNA binding domain  
jgi|Araly1|905889|scaffold_501593.1   1.57e-16   3-98   B3 DNA binding domain  
jgi|Araly1|906255|scaffold_501959.1   0.00000000000000451   190-314   B3 DNA binding domain  
jgi|Araly1|906718|scaffold_502422.1   1.12e-23   8-100   B3 DNA binding domain  
  0.000000124   174-266   B3 DNA binding domain  
jgi|Araly1|909450|scaffold_601507.1   7.85e-22   7-103   B3 DNA binding domain  
jgi|Araly1|911665|scaffold_603722.1   0.000000000608   19-115   B3 DNA binding domain  
jgi|Araly1|911666|scaffold_603723.1   0.00000000000216   14-112   B3 DNA binding domain  
jgi|Araly1|911667|scaffold_603724.1   0.000000137   17-113   B3 DNA binding domain  
jgi|Araly1|912083|scaffold_604140.1   1.7e-30   30-119   B3 DNA binding domain  
jgi|Araly1|912952|scaffold_700694.1   5.49e-21   10-101   B3 DNA binding domain  
  0.0000432   274-360   B3 DNA binding domain  
jgi|Araly1|913118|scaffold_700860.1   0.0000000000471   533-601   B3 DNA binding domain  
  0.00000000216   439-510   B3 DNA binding domain  
jgi|Araly1|913255|scaffold_700997.1   4.97e-20   286-389   B3 DNA binding domain  
jgi|Araly1|913296|scaffold_701038.1   2.16e-20   9-109   B3 DNA binding domain  
  3.73e-19   157-250   B3 DNA binding domain  
  0.0000000000000942   284-389   B3 DNA binding domain  
jgi|Araly1|913297|scaffold_701039.1   5.89e-17   9-101   B3 DNA binding domain  
jgi|Araly1|913300|scaffold_701042.1   1.04e-22   9-109   B3 DNA binding domain  
  7.65e-21   145-246   B3 DNA binding domain  
  1.37e-16   271-368   B3 DNA binding domain  
jgi|Araly1|913475|scaffold_701217.1   7.72e-30   115-223   B3 DNA binding domain  
jgi|Araly1|913808|scaffold_701550.1   0.00000000000000196   173-299   B3 DNA binding domain  
jgi|Araly1|914517|scaffold_702259.1   0.0000000000353   330-410   B3 DNA binding domain  
jgi|Araly1|916468|scaffold_704210.1   7.85e-20   11-111   B3 DNA binding domain  
  0.0412   154-183   B3 DNA binding domain  
jgi|Araly1|916469|scaffold_704211.1   9.81e-20   11-111   B3 DNA binding domain  
jgi|Araly1|916477|scaffold_704219.1   0.0000000000000687   259-385   B3 DNA binding domain  
jgi|Araly1|918037|scaffold_801437.1   7.85e-17   139-245   B3 DNA binding domain  
jgi|Araly1|919255|scaffold_802655.1   9.22e-21   11-106   B3 DNA binding domain  
  0.000000000216   139-228   B3 DNA binding domain  
jgi|Araly1|919257|scaffold_802657.1   7.46e-18   11-107   B3 DNA binding domain  
  0.000000000167   122-220   B3 DNA binding domain  
jgi|Araly1|919450|scaffold_802850.1   3.14e-40   157-289   B3 DNA binding domain  
 
Weak hits:
jgi|Araly1|334324|fgenesh1_pg.C_scaffold_1000889   0.00011   50-110   B3 DNA binding domain  
jgi|Araly1|857117|Al_scaffold_0007_616   0.000471   4-59   B3 DNA binding domain  
jgi|Araly1|895765|scaffold_202839.1   0.0161   95-200   B3 DNA binding domain  
jgi|Araly1|899132|scaffold_303102.1   0.000706   77-142   B3 DNA binding domain  
jgi|Araly1|910748|scaffold_602805.1   0.000102   81-149   B3 DNA binding domain  
jgi|Araly1|913636|scaffold_701378.1   0.0981   59-124   B3 DNA binding domain  
jgi|Araly1|917505|scaffold_800905.1   0.0628   84-116   B3 DNA binding domain  

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View all assignments containing a DNA-binding pseudobarrel domain domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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