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DNA-binding pseudobarrel domain superfamily domain assignments
in
Oryza sativa ssp. japonica 5.0

Assignment details

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Oryza sativa ssp. japonica 5.0 has 173 significant domains in 134 proteins.

     

Sequence ID   Evalue   Region   Family  
LOC_Os01g04750.1|13101.m00438|protein   2.09e-29   175-287   B3 DNA binding domain  
LOC_Os01g04800.1|13101.m00443|protein   4.58e-30   179-291   B3 DNA binding domain  
LOC_Os01g13180.1|13101.m01448|protein   0.000000353   178-283   B3 DNA binding domain  
LOC_Os01g13300.1|13101.m01459|protein   4.32e-24   147-241   B3 DNA binding domain  
LOC_Os01g13520.1|13101.m01486|protein   4.71e-37   113-251   B3 DNA binding domain  
LOC_Os01g13520.2|13101.m15000|protein   6.8e-20   2-99   B3 DNA binding domain  
LOC_Os01g35930.1|13101.m03636|protein   0.0000471   1-41   B3 DNA binding domain  
LOC_Os01g48060.1|13101.m04975|protein   1.44e-42   144-284   B3 DNA binding domain  
LOC_Os01g48060.2|13101.m04976|protein   1.44e-42   144-284   B3 DNA binding domain  
LOC_Os01g48060.3|13101.m04977|protein   1.44e-42   144-284   B3 DNA binding domain  
LOC_Os01g49830.1|13101.m05187|protein   2.88e-30   214-309   B3 DNA binding domain  
LOC_Os01g51610.1|13101.m05385|protein   1.43e-17   180-278   B3 DNA binding domain  
LOC_Os01g52514.1|13101.m05498|protein   1.51e-23   283-379   B3 DNA binding domain  
  4.71e-21   17-125   B3 DNA binding domain  
LOC_Os01g52540.1|13101.m05500|protein   1.96e-21   6-115   B3 DNA binding domain  
LOC_Os01g54990.1|13101.m05780|protein   2.75e-47   175-330   B3 DNA binding domain  
LOC_Os01g67830.1|13101.m07377|protein   1.77e-22   76-174   B3 DNA binding domain  
  0.0000000000000706   577-667   B3 DNA binding domain  
LOC_Os01g68370.1|13101.m07446|protein   4.58e-19   536-629   B3 DNA binding domain  
LOC_Os01g68370.2|13101.m07445|protein   9.81e-22   513-610   B3 DNA binding domain  
LOC_Os01g68370.3|13101.m07447|protein   9.16e-22   513-607   B3 DNA binding domain  
LOC_Os01g68370.4|13101.m07444|protein   4.45e-19   513-606   B3 DNA binding domain  
LOC_Os01g70270.1|13101.m07629|protein   8.63e-40   121-258   B3 DNA binding domain  
LOC_Os01g70270.2|13101.m07631|protein   8.63e-40   121-258   B3 DNA binding domain  
LOC_Os01g70270.3|13101.m07632|protein   8.63e-40   121-258   B3 DNA binding domain  
LOC_Os01g70270.4|13101.m07630|protein   8.11e-40   121-258   B3 DNA binding domain  
LOC_Os02g04810.1|13102.m00513|protein   1.57e-41   134-274   B3 DNA binding domain  
LOC_Os02g06910.1|13102.m00772|protein   1.44e-48   119-263   B3 DNA binding domain  
LOC_Os02g10420.1|13102.m01159|protein   0.00000000000000216   9-78   B3 DNA binding domain  
LOC_Os02g22280.1|13102.m02501|protein   0.000000000051   1384-1480   B3 DNA binding domain  
  0.00000011   1274-1349   B3 DNA binding domain  
LOC_Os02g24750.1|13102.m02681|protein   0.00000000353   436-532   B3 DNA binding domain  
LOC_Os02g25820.1|13102.m02793|protein   1.29e-18   27-126   B3 DNA binding domain  
LOC_Os02g25830.1|13102.m02794|protein   5.69e-18   27-132   B3 DNA binding domain  
LOC_Os02g35140.1|13102.m03812|protein   4.58e-44   117-257   B3 DNA binding domain  
LOC_Os02g38470.1|13102.m04233|protein   1.92e-16   377-470   B3 DNA binding domain  
  0.000000000000159   956-1047   B3 DNA binding domain  
LOC_Os02g41800.1|13102.m04616|protein   8.63e-29   116-222   B3 DNA binding domain  
LOC_Os02g41800.2|13102.m04617|protein   8.24e-29   116-222   B3 DNA binding domain  
LOC_Os02g45850.1|13102.m05144|protein   5.36e-29   93-201   B3 DNA binding domain  
LOC_Os03g02900.1|13103.m00268|protein   6.8e-29   34-125   B3 DNA binding domain  
LOC_Os03g06850.1|13103.m00754|protein   0.00000000153   11-89   B3 DNA binding domain  
LOC_Os03g06850.2|13103.m00755|protein   0.00000000153   11-89   B3 DNA binding domain  
LOC_Os03g06850.3|13103.m12929|protein   0.00000000153   11-89   B3 DNA binding domain  
LOC_Os03g06850.4|13103.m12930|protein   0.00000000153   11-89   B3 DNA binding domain  
LOC_Os03g06850.5|13103.m12931|protein   0.00000000153   11-89   B3 DNA binding domain  
LOC_Os03g08620.1|13103.m00997|protein   4.12e-24   130-227   B3 DNA binding domain  
LOC_Os03g11370.1|13103.m01281|protein   1.45e-19   13-116   B3 DNA binding domain  
  7.46e-16   155-246   B3 DNA binding domain  
LOC_Os03g42230.1|13103.m04546|protein   4.12e-23   22-121   B3 DNA binding domain  
  1.24e-18   227-333   B3 DNA binding domain  
  3.66e-18   425-528   B3 DNA binding domain  
LOC_Os03g42240.1|13103.m04547|protein   3.34e-20   23-121   B3 DNA binding domain  
  3.73e-18   223-327   B3 DNA binding domain  
  8.63e-17   440-530   B3 DNA binding domain  
LOC_Os03g42250.1|13103.m04548|protein   3.14e-23   23-119   B3 DNA binding domain  
LOC_Os03g42280.1|13103.m04552|protein   8.63e-24   242-335   B3 DNA binding domain  
  1.22e-20   25-124   B3 DNA binding domain  
  4.51e-19   409-516   B3 DNA binding domain  
LOC_Os03g42280.2|13103.m04551|protein   1.75e-19   204-311   B3 DNA binding domain  
  5.49e-18   60-130   B3 DNA binding domain  
LOC_Os03g42290.1|13103.m04554|protein   1.92e-20   238-346   B3 DNA binding domain  
  3.66e-20   29-130   B3 DNA binding domain  
LOC_Os03g42370.1|13103.m04560|protein   7.85e-25   144-242   B3 DNA binding domain  
  1.61e-23   447-545   B3 DNA binding domain  
  6.67e-22   727-826   B3 DNA binding domain  
  7.26e-18   928-1026   B3 DNA binding domain  
  0.00000000000000373   331-409   B3 DNA binding domain  
  0.0314   636-697   B3 DNA binding domain  
LOC_Os03g42410.1|13103.m04563|protein   1.12e-20   202-305   B3 DNA binding domain  
  3.92e-20   40-124   B3 DNA binding domain  
LOC_Os03g42420.1|13103.m04564|protein   1.41e-23   28-128   B3 DNA binding domain  
  0.000000000000184   253-346   B3 DNA binding domain  
LOC_Os03g42430.1|13103.m04565|protein   2.55e-21   30-129   B3 DNA binding domain  
  6.28e-16   250-340   B3 DNA binding domain  
LOC_Os04g27960.1|13104.m02643|protein   5.3e-16   137-225   B3 DNA binding domain  
  0.0000000000000184   306-415   B3 DNA binding domain  
  0.0000000000216   22-110   B3 DNA binding domain  
LOC_Os04g27990.1|13104.m02646|protein   0.00000000000000314   20-126   B3 DNA binding domain  
LOC_Os04g28000.1|13104.m02647|protein   0.00000000000000159   137-246   B3 DNA binding domain  
  0.0000000000106   4-64   B3 DNA binding domain  
LOC_Os04g31730.1|13104.m03033|protein   0.00000000000000334   90-189   B3 DNA binding domain  
LOC_Os04g36054.1|13104.m03527|protein   4.97e-45   110-255   B3 DNA binding domain  
LOC_Os04g43090.1|13104.m04270|protein   0.00000159   56-97   B3 DNA binding domain  
LOC_Os04g43910.1|13104.m04369|protein   9.94e-29   114-222   B3 DNA binding domain  
LOC_Os04g46690.1|13104.m04705|protein   0.00000000334   796-885   B3 DNA binding domain  
LOC_Os04g49230.1|13104.m05025|protein   3.53e-29   107-201   B3 DNA binding domain  
LOC_Os04g56850.1|13104.m05928|protein   3.4e-45   133-272   B3 DNA binding domain  
LOC_Os04g56850.2|13104.m05929|protein   3.27e-45   133-272   B3 DNA binding domain  
LOC_Os04g57610.1|13104.m06036|protein   7.85e-48   124-268   B3 DNA binding domain  
LOC_Os04g57610.3|13104.m06037|protein   7.72e-48   120-264   B3 DNA binding domain  
LOC_Os04g58000.1|13104.m06083|protein   3.73e-17   296-393   B3 DNA binding domain  
LOC_Os04g58010.1|13104.m06084|protein   1.02e-18   367-464   B3 DNA binding domain  
LOC_Os04g59430.1|13104.m06262|protein   2.09e-26   117-237   B3 DNA binding domain  
LOC_Os05g14360.1|13105.m01512|protein   0.00000171   271-371   B3 DNA binding domain  
LOC_Os05g15100.1|13105.m01587|protein   0.00000155   251-313   B3 DNA binding domain  
LOC_Os05g40280.1|13105.m04259|protein   1.37e-24   132-228   B3 DNA binding domain  
LOC_Os05g43920.1|13105.m04632|protein   3.92e-37   122-283   B3 DNA binding domain  
LOC_Os05g47650.1|13105.m05050|protein   2.62e-28   191-311   B3 DNA binding domain  
LOC_Os05g48870.1|13105.m05216|protein   5.62e-43   136-258   B3 DNA binding domain  
LOC_Os06g01860.1|13106.m00101|protein   3.92e-26   33-133   B3 DNA binding domain  
LOC_Os06g02230.1|13106.m00142|protein   3.34e-18   52-152   B3 DNA binding domain  
LOC_Os06g09420.1|13106.m01011|protein   4.12e-24   132-230   B3 DNA binding domain  
LOC_Os06g09660.1|13106.m01042|protein   2.49e-44   117-256   B3 DNA binding domain  
LOC_Os06g42630.1|13106.m04461|protein   9.61e-20   140-244   B3 DNA binding domain  
  0.0000000000255   12-125   B3 DNA binding domain  
  0.0000000294   316-390   B3 DNA binding domain  
LOC_Os06g46410.1|13106.m04903|protein   2.49e-48   119-263   B3 DNA binding domain  
LOC_Os06g46410.2|13106.m04904|protein   2.22e-48   52-196   B3 DNA binding domain  
LOC_Os06g47150.1|13106.m04996|protein   1.18e-28   124-230   B3 DNA binding domain  
LOC_Os06g47150.2|13106.m04997|protein   1.18e-28   124-230   B3 DNA binding domain  
LOC_Os06g47150.3|13106.m04994|protein   1.18e-28   124-230   B3 DNA binding domain  
LOC_Os06g47150.4|13106.m04995|protein   1.12e-28   124-230   B3 DNA binding domain  
LOC_Os06g48950.1|13106.m05212|protein   3.27e-43   110-250   B3 DNA binding domain  
LOC_Os07g08520.1|13107.m00845|protein   0.0000000000000051   431-542   B3 DNA binding domain  
  0.0000000000000196   115-231   B3 DNA binding domain  
LOC_Os07g08530.1|13107.m00846|protein   0.0000000000017   119-232   B3 DNA binding domain  
LOC_Os07g08540.1|13107.m00847|protein   1.44e-16   119-228   B3 DNA binding domain  
  1.44e-16   439-539   B3 DNA binding domain  
LOC_Os07g08600.1|13107.m00853|protein   3.01e-19   334-435   B3 DNA binding domain  
LOC_Os07g12820.1|13107.m01331|protein   0.000000000000353   8-92   B3 DNA binding domain  
LOC_Os07g17230.1|13107.m01806|protein   4.84e-21   71-160   B3 DNA binding domain  
LOC_Os07g37610.1|13107.m03873|protein   2.62e-19   450-552   B3 DNA binding domain  
LOC_Os07g48200.1|13107.m05152|protein   3.01e-21   360-463   B3 DNA binding domain  
LOC_Os07g48200.2|13107.m05153|protein   1.96e-21   360-463   B3 DNA binding domain  
LOC_Os08g01090.1|13108.m00012|protein   5.49e-16   252-340   B3 DNA binding domain  
LOC_Os08g01090.2|13108.m00013|protein   4.58e-16   216-304   B3 DNA binding domain  
LOC_Os08g06120.1|13108.m00611|protein   1.31e-27   68-162   B3 DNA binding domain  
LOC_Os08g17990.1|13108.m01918|protein   0.0000000314   1456-1507   B3 DNA binding domain  
LOC_Os08g18060.1|13108.m01922|protein   0.00000392   340-385   B3 DNA binding domain  
LOC_Os08g23470.1|13108.m02404|protein   3.14e-21   20-114   B3 DNA binding domain  
LOC_Os08g23570.1|13108.m02414|protein   6.08e-19   22-123   B3 DNA binding domain  
  0.0471   329-381   B3 DNA binding domain  
LOC_Os08g24470.1|13108.m02510|protein   0.0000012   2-51   B3 DNA binding domain  
LOC_Os08g30500.1|13108.m03155|protein   0.000000196   74-102   B3 DNA binding domain  
LOC_Os08g40900.1|13108.m04382|protein   4.84e-42   122-261   B3 DNA binding domain  
LOC_Os08g40900.2|13108.m04381|protein   4.58e-42   61-200   B3 DNA binding domain  
LOC_Os09g21360.1|13109.m02044|protein   0.0000863   165-222   B3 DNA binding domain  
LOC_Os10g07060.1|13110.m00627|protein   0.0000000000000824   9-96   B3 DNA binding domain  
LOC_Os10g17630.1|13110.m01444|protein   0.0000000000000149   52-132   B3 DNA binding domain  
  0.0000000000785   195-269   B3 DNA binding domain  
LOC_Os10g33940.1|13110.m03010|protein   1.96e-29   119-232   B3 DNA binding domain  
LOC_Os10g39190.1|13110.m03585|protein   1.7e-28   32-136   B3 DNA binding domain  
LOC_Os11g05740.1|13111.m00558|protein   9.29e-30   35-130   B3 DNA binding domain  
LOC_Os11g09160.1|13111.m00964|protein   9.81e-26   291-391   B3 DNA binding domain  
  2.75e-22   31-127   B3 DNA binding domain  
LOC_Os11g09160.2|13111.m09208|protein   7.98e-26   250-350   B3 DNA binding domain  
  5.36e-21   3-86   B3 DNA binding domain  
LOC_Os11g13900.1|13111.m01420|protein   0.000000139   154-228   B3 DNA binding domain  
  0.000000471   2-51   B3 DNA binding domain  
LOC_Os11g32110.1|13111.m03123|protein   4.02e-41   144-278   B3 DNA binding domain  
LOC_Os11g32110.2|13111.m03122|protein   4.02e-41   143-277   B3 DNA binding domain  
LOC_Os11g32110.3|13111.m03124|protein   4.02e-41   143-277   B3 DNA binding domain  
LOC_Os11g32110.4|13111.m03121|protein   3.92e-41   127-261   B3 DNA binding domain  
LOC_Os11g40900.1|13111.m04056|protein   0.000000235   137-210   B3 DNA binding domain  
  0.000000412   2-51   B3 DNA binding domain  
LOC_Os12g06080.1|13112.m00617|protein   1.19e-30   33-127   B3 DNA binding domain  
LOC_Os12g17140.1|13112.m01816|protein   0.00000000275   252-321   B3 DNA binding domain  
LOC_Os12g29520.1|13112.m02997|protein   2.94e-41   141-277   B3 DNA binding domain  
LOC_Os12g29520.2|13112.m02999|protein   2.94e-41   141-277   B3 DNA binding domain  
LOC_Os12g29520.3|13112.m03001|protein   2.94e-41   140-276   B3 DNA binding domain  
LOC_Os12g29520.4|13112.m03000|protein   2.94e-41   140-276   B3 DNA binding domain  
LOC_Os12g29520.5|13112.m02998|protein   2.45e-41   53-189   B3 DNA binding domain  
LOC_Os12g40070.1|13112.m04165|protein   3.34e-20   3-97   B3 DNA binding domain  
  1.79e-16   202-292   B3 DNA binding domain  
  5.69e-16   558-660   B3 DNA binding domain  
  0.00000000000000275   431-535   B3 DNA binding domain  
  0.00143   338-384   B3 DNA binding domain  
LOC_Os12g40080.1|13112.m04166|protein   7.26e-23   21-119   B3 DNA binding domain  
  1.06e-19   381-487   B3 DNA binding domain  
  3.73e-18   230-329   B3 DNA binding domain  
LOC_Os12g40090.1|13112.m04167|protein   6.28e-21   221-322   B3 DNA binding domain  
  6.28e-18   3-104   B3 DNA binding domain  
LOC_Os12g40120.1|13112.m04170|protein   2.35e-18   245-348   B3 DNA binding domain  
  9.02e-18   21-124   B3 DNA binding domain  
LOC_Os12g41950.1|13112.m04394|protein   7.06e-49   117-261   B3 DNA binding domain  
 
Weak hits:
LOC_Os01g48430.1|13101.m05024|protein   0.000106   266-330   B3 DNA binding domain  
LOC_Os02g06980.1|13102.m00783|protein   0.0549   138-169   B3 DNA binding domain  
LOC_Os02g15340.1|13102.m01713|protein   0.0549   211-235   B3 DNA binding domain  
LOC_Os03g57930.1|13103.m06358|protein   0.049   222-284   B3 DNA binding domain  
LOC_Os05g14770.1|13105.m01554|protein   0.0157   306-355   B3 DNA binding domain  
LOC_Os08g19330.1|13108.m02008|protein   0.00369   228-291   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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