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DNA-binding pseudobarrel domain superfamily domain assignments
in
Carica papaya

Assignment details

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Carica papaya has 75 significant domains in 59 proteins.

     

Sequence ID   Evalue   Region   Family  
evm.TU.contig_29173.1   4.32e-31   122-231   B3 DNA binding domain  
evm.TU.contig_31756.1   5.62e-40   156-290   B3 DNA binding domain  
evm.TU.contig_32277.1   1.7e-26   173-272   B3 DNA binding domain  
evm.TU.contig_39547.1   5.49e-19   2-79   B3 DNA binding domain  
evm.TU.contig_42681.1   0.000000000053   6-68   B3 DNA binding domain  
evm.TU.supercontig_0.83   1.96e-20   258-362   B3 DNA binding domain  
evm.TU.supercontig_10.125   5.49e-20   161-265   B3 DNA binding domain  
  0.00000000000000235   5-71   B3 DNA binding domain  
  0.00000000000000883   297-375   B3 DNA binding domain  
evm.TU.supercontig_108.16   3.27e-31   113-186   B3 DNA binding domain  
evm.TU.supercontig_115.29   1.96e-34   166-258   B3 DNA binding domain  
evm.TU.supercontig_128.16   2.94e-22   16-118   B3 DNA binding domain  
  0.0000000471   170-240   B3 DNA binding domain  
evm.TU.supercontig_13.142   0.00000000687   157-270   B3 DNA binding domain  
evm.TU.supercontig_132.48   0.00000000961   1-66   B3 DNA binding domain  
  0.00235   115-154   B3 DNA binding domain  
  0.0844   248-271   B3 DNA binding domain  
evm.TU.supercontig_132.49   5.69e-18   5-89   B3 DNA binding domain  
evm.TU.supercontig_132.65   8.63e-23   194-299   B3 DNA binding domain  
  1.88e-21   19-122   B3 DNA binding domain  
  1.9e-20   342-448   B3 DNA binding domain  
evm.TU.supercontig_132.66   1.06e-16   155-248   B3 DNA binding domain  
  0.0000000000000049   328-407   B3 DNA binding domain  
  0.000000373   254-294   B3 DNA binding domain  
  0.0000102   20-74   B3 DNA binding domain  
evm.TU.supercontig_132.68   1.96e-17   191-292   B3 DNA binding domain  
  0.000000294   2-45   B3 DNA binding domain  
  0.0235   339-395   B3 DNA binding domain  
evm.TU.supercontig_132.70   7.65e-23   349-456   B3 DNA binding domain  
  9.81e-20   19-122   B3 DNA binding domain  
  0.00000000000000104   213-304   B3 DNA binding domain  
evm.TU.supercontig_1360.2   0.0000212   9-111   B3 DNA binding domain  
evm.TU.supercontig_139.79   9.03e-44   172-290   B3 DNA binding domain  
evm.TU.supercontig_15.1   4.05e-41   120-258   B3 DNA binding domain  
evm.TU.supercontig_15.69   0.0000000000000106   191-289   B3 DNA binding domain  
  0.00000000000196   5-49   B3 DNA binding domain  
evm.TU.supercontig_17.47   1.57e-49   112-256   B3 DNA binding domain  
evm.TU.supercontig_173.19   7.06e-25   116-186   B3 DNA binding domain  
evm.TU.supercontig_2.251   6.67e-23   217-314   B3 DNA binding domain  
evm.TU.supercontig_2.279   4.32e-21   336-439   B3 DNA binding domain  
evm.TU.supercontig_26.24   1.23e-46   135-277   B3 DNA binding domain  
evm.TU.supercontig_26.25   6.02e-36   135-227   B3 DNA binding domain  
evm.TU.supercontig_261.2   0.000000000628   120-190   B3 DNA binding domain  
evm.TU.supercontig_28.47   0.00000000000186   147-258   B3 DNA binding domain  
evm.TU.supercontig_3.75   0.000000000628   130-237   B3 DNA binding domain  
evm.TU.supercontig_357.1   5.89e-21   6-104   B3 DNA binding domain  
evm.TU.supercontig_3630.1   0.00000345   7-115   B3 DNA binding domain  
evm.TU.supercontig_37.106   3.79e-29   136-242   B3 DNA binding domain  
evm.TU.supercontig_4.67   0.0000271   183-285   B3 DNA binding domain  
evm.TU.supercontig_46.145   5.62e-28   167-264   B3 DNA binding domain  
evm.TU.supercontig_48.188   0.00000000412   3-90   B3 DNA binding domain  
  0.0000451   155-236   B3 DNA binding domain  
evm.TU.supercontig_49.120   3.53e-28   116-229   B3 DNA binding domain  
evm.TU.supercontig_53.86   6.02e-30   109-227   B3 DNA binding domain  
evm.TU.supercontig_55.162   7.06e-24   121-218   B3 DNA binding domain  
evm.TU.supercontig_57.70   9.03e-30   31-122   B3 DNA binding domain  
evm.TU.supercontig_62.23   3.92e-24   128-225   B3 DNA binding domain  
evm.TU.supercontig_62.24   4.32e-22   12-110   B3 DNA binding domain  
evm.TU.supercontig_62.25   4.32e-24   150-247   B3 DNA binding domain  
evm.TU.supercontig_62.26   0.00000171   101-147   B3 DNA binding domain  
evm.TU.supercontig_62.74   2.09e-25   222-322   B3 DNA binding domain  
  0.000000000000116   3-72   B3 DNA binding domain  
evm.TU.supercontig_62.76   1.96e-24   278-378   B3 DNA binding domain  
  2.35e-22   15-108   B3 DNA binding domain  
evm.TU.supercontig_64.14   8.83e-23   20-112   B3 DNA binding domain  
evm.TU.supercontig_64.15   5.89e-20   21-113   B3 DNA binding domain  
  3.14e-17   233-320   B3 DNA binding domain  
evm.TU.supercontig_65.4   2.75e-29   106-215   B3 DNA binding domain  
evm.TU.supercontig_7.142   3.73e-23   7-103   B3 DNA binding domain  
evm.TU.supercontig_7.3   3.14e-42   147-253   B3 DNA binding domain  
evm.TU.supercontig_70.86   0.000000000000961   81-158   B3 DNA binding domain  
evm.TU.supercontig_73.59   0.000000000432   12-75   B3 DNA binding domain  
evm.TU.supercontig_8.179   1.35e-22   605-699   B3 DNA binding domain  
evm.TU.supercontig_80.116   0.0000000000000863   212-311   B3 DNA binding domain  
evm.TU.supercontig_81.87   0.0000000000000589   119-224   B3 DNA binding domain  
evm.TU.supercontig_85.9   0.00000000000102   157-269   B3 DNA binding domain  
evm.TU.supercontig_9.156   3.14e-34   130-265   B3 DNA binding domain  
evm.TU.supercontig_96.41   1.44e-40   120-260   B3 DNA binding domain  
 
Weak hits:
evm.TU.supercontig_132.67   0.000314   54-98   B3 DNA binding domain  
evm.TU.supercontig_23.30   0.00314   40-84   B3 DNA binding domain  
evm.TU.supercontig_4.100   0.00122   133-217   B3 DNA binding domain  
evm.TU.supercontig_6.317   0.0549   109-169   Type II restriction endonuclease effector domain  
evm.TU.supercontig_95.56   0.0118   29-136   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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