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DNA-binding pseudobarrel domain superfamily domain assignments
in
Fragaria vesca

Assignment details

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Fragaria vesca has 202 significant domains in 132 proteins.

     

Sequence ID   Evalue   Region   Family  
gene00488   0.00000589   18-66   B3 DNA binding domain  
gene01379   0.00000192   112-158   B3 DNA binding domain  
gene01855   5.1e-29   112-206   B3 DNA binding domain  
gene02025   2.55e-21   12-112   B3 DNA binding domain  
  0.0000294   189-245   B3 DNA binding domain  
gene02234   1.31e-30   135-262   B3 DNA binding domain  
gene02509   1.71e-23   5-101   B3 DNA binding domain  
  0.00000000000000255   145-240   B3 DNA binding domain  
  0.000000000000608   259-353   B3 DNA binding domain  
gene03292   2.09e-19   158-257   B3 DNA binding domain  
gene03871   7.59e-30   209-312   B3 DNA binding domain  
gene04888   0.000000000000145   108-190   B3 DNA binding domain  
  0.00000102   1-38   B3 DNA binding domain  
gene05078   0.00000981   76-137   B3 DNA binding domain  
gene05087   1.2e-21   194-287   B3 DNA binding domain  
  4.12e-20   35-133   B3 DNA binding domain  
gene05236   0.0000135   86-148   B3 DNA binding domain  
  0.0000981   249-311   B3 DNA binding domain  
gene05237   0.000000000883   105-192   B3 DNA binding domain  
  0.000000126   26-68   B3 DNA binding domain  
gene05436   0.0000000000392   35-97   B3 DNA binding domain  
gene06404   0.0000000373   32-110   B3 DNA binding domain  
gene06434   1.7e-40   163-296   B3 DNA binding domain  
gene07276   8.04e-16   93-180   B3 DNA binding domain  
gene07345   2.55e-20   119-213   B3 DNA binding domain  
  1.69e-18   694-791   B3 DNA binding domain  
  3.34e-18   505-605   B3 DNA binding domain  
  0.0000000000000194   349-431   B3 DNA binding domain  
gene07458   3.92e-17   26-120   B3 DNA binding domain  
gene07828   2.09e-24   184-283   B3 DNA binding domain  
gene07861   4.71e-17   456-574   B3 DNA binding domain  
gene08492   2.62e-46   264-406   B3 DNA binding domain  
gene09082   1.35e-24   117-212   B3 DNA binding domain  
gene09083   1.9e-20   128-222   B3 DNA binding domain  
gene09434   8.24e-20   174-272   B3 DNA binding domain  
  0.0000000000000412   26-124   B3 DNA binding domain  
gene09505   0.00000000000102   460-568   B3 DNA binding domain  
gene09506   0.0000000746   249-353   B3 DNA binding domain  
gene09733   3.27e-29   277-387   B3 DNA binding domain  
gene09916   2.35e-17   31-124   B3 DNA binding domain  
gene09917   0.00000000216   277-366   B3 DNA binding domain  
gene09930   0.0000000000000294   116-221   B3 DNA binding domain  
gene10222   0.0000000726   80-142   B3 DNA binding domain  
gene10330   1.44e-28   138-230   B3 DNA binding domain  
gene10539   0.000000000608   75-155   B3 DNA binding domain  
gene10828   2.55e-20   6-101   B3 DNA binding domain  
  2.35e-19   302-401   B3 DNA binding domain  
gene11223   1.9e-19   10-104   B3 DNA binding domain  
  0.00000000000412   154-252   B3 DNA binding domain  
gene11656   0.00000000000314   61-154   B3 DNA binding domain  
gene12000   6.87e-24   8-104   B3 DNA binding domain  
  0.00000000000000726   131-230   B3 DNA binding domain  
gene12224   4.71e-43   123-263   B3 DNA binding domain  
gene12431   0.000000000000373   65-147   B3 DNA binding domain  
gene12434   0.000000000255   4-68   B3 DNA binding domain  
gene12617   6.08e-21   275-376   B3 DNA binding domain  
  1.41e-18   622-724   B3 DNA binding domain  
  0.00000000000000216   473-572   B3 DNA binding domain  
gene12744   0.0000000863   82-133   B3 DNA binding domain  
gene12784   0.00000334   13-74   B3 DNA binding domain  
gene12786   0.000000000000112   679-780   B3 DNA binding domain  
  0.00000000000255   22-121   B3 DNA binding domain  
  0.00000000000255   374-473   B3 DNA binding domain  
  0.00000000184   580-656   B3 DNA binding domain  
  0.00000628   230-277   B3 DNA binding domain  
gene12787   0.0000000000255   172-277   B3 DNA binding domain  
  0.0000000000667   20-116   B3 DNA binding domain  
gene12899   0.000000255   204-309   B3 DNA binding domain  
gene12917   9.68e-44   116-255   B3 DNA binding domain  
gene13877   1.01e-18   325-427   B3 DNA binding domain  
gene13990   1.43e-18   14-114   B3 DNA binding domain  
  1.51e-16   146-252   B3 DNA binding domain  
gene14219   0.000000785   6-78   B3 DNA binding domain  
  0.000137   173-224   B3 DNA binding domain  
gene14412   3.73e-23   225-322   B3 DNA binding domain  
  3.53e-22   10-108   B3 DNA binding domain  
  0.00000000137   404-482   B3 DNA binding domain  
gene15016   2.35e-20   195-289   B3 DNA binding domain  
gene15023   1.96e-22   436-532   B3 DNA binding domain  
  0.0000000000000373   566-662   B3 DNA binding domain  
gene15053   3.92e-24   371-473   B3 DNA binding domain  
  8.04e-24   11-111   B3 DNA binding domain  
  1.1e-18   193-270   B3 DNA binding domain  
gene15212   1.2e-24   4-100   B3 DNA binding domain  
gene15627   7.32e-32   92-203   B3 DNA binding domain  
gene15998   0.00000000167   13-77   B3 DNA binding domain  
  0.053   118-153   B3 DNA binding domain  
gene16050   2.75e-26   217-323   B3 DNA binding domain  
gene16704   0.000000000173   20-128   B3 DNA binding domain  
gene16844   8.76e-29   305-415   B3 DNA binding domain  
gene17035   0.0000000294   148-222   B3 DNA binding domain  
gene17107   2.55e-19   527-627   B3 DNA binding domain  
  8.63e-16   699-795   B3 DNA binding domain  
gene17562   2.75e-23   590-689   B3 DNA binding domain  
gene17908   0.0000000000000216   122-215   B3 DNA binding domain  
gene18576   8.04e-22   5-103   B3 DNA binding domain  
gene18594   4.84e-31   80-189   B3 DNA binding domain  
gene18951   6.28e-16   128-239   B3 DNA binding domain  
gene18952   0.00000000706   6-81   B3 DNA binding domain  
  0.00000608   109-157   B3 DNA binding domain  
gene18956   0.00000000000451   13-110   B3 DNA binding domain  
  0.0000000000294   177-293   B3 DNA binding domain  
gene18957   1.67e-16   240-338   B3 DNA binding domain  
gene19105   0.00000000412   141-245   B3 DNA binding domain  
gene19138   5.1e-40   129-268   B3 DNA binding domain  
gene19147   0.000000000000173   359-441   B3 DNA binding domain  
  0.0000000049   11-102   B3 DNA binding domain  
  0.0000000135   144-202   B3 DNA binding domain  
gene19345   0.000000149   272-375   B3 DNA binding domain  
gene19367   1.75e-20   139-231   B3 DNA binding domain  
  6.28e-18   9-108   B3 DNA binding domain  
gene19375   8.63e-21   102-194   B3 DNA binding domain  
  0.00000000000011   10-70   B3 DNA binding domain  
gene20279   0.000000647   64-117   B3 DNA binding domain  
gene20415   0.0000000451   23-85   B3 DNA binding domain  
gene20418   0.0000108   90-160   B3 DNA binding domain  
gene20854   5.3e-17   1-80   B3 DNA binding domain  
  4.12e-16   108-207   B3 DNA binding domain  
gene21035   0.00000000000373   19-88   B3 DNA binding domain  
gene21463   2.75e-17   232-328   B3 DNA binding domain  
  0.000353   5-74   B3 DNA binding domain  
gene21706   0.00000451   191-236   B3 DNA binding domain  
gene21822   0.000000667   204-274   B3 DNA binding domain  
gene22039   1.04e-20   205-298   B3 DNA binding domain  
  4.12e-17   43-142   B3 DNA binding domain  
gene22728   9.81e-49   635-778   B3 DNA binding domain  
gene23280   1.7e-28   112-218   B3 DNA binding domain  
gene23816   0.00000000000000628   83-196   B3 DNA binding domain  
gene24052   8.83e-22   1949-2047   B3 DNA binding domain  
gene24281   0.000000000167   78-161   B3 DNA binding domain  
gene24427   2.62e-28   179-274   B3 DNA binding domain  
gene24798   0.0000000000051   177-280   B3 DNA binding domain  
gene24961   1.96e-22   168-264   B3 DNA binding domain  
  1.06e-16   2-70   B3 DNA binding domain  
  0.00000000000000235   349-455   B3 DNA binding domain  
gene25123   1.57e-40   120-260   B3 DNA binding domain  
gene25169   0.0000000255   59-168   B3 DNA binding domain  
gene25382   6.28e-16   43-161   B3 DNA binding domain  
gene26057   0.000000876   29-112   B3 DNA binding domain  
gene26080   9.81e-17   375-484   B3 DNA binding domain  
  5.89e-16   50-130   B3 DNA binding domain  
  0.0000000353   207-286   B3 DNA binding domain  
gene26847   5.76e-27   174-258   B3 DNA binding domain  
gene26947   0.00000844   817-869   B3 DNA binding domain  
gene27595   1.29e-17   434-515   B3 DNA binding domain  
  0.000902   670-714   B3 DNA binding domain  
gene27792   1.83e-36   125-258   B3 DNA binding domain  
gene28054   2.35e-22   126-223   B3 DNA binding domain  
gene28098   1.14e-20   354-457   B3 DNA binding domain  
gene28545   6.15e-44   162-281   B3 DNA binding domain  
gene28596   0.000000000000177   35-102   B3 DNA binding domain  
gene28597   6.08e-19   13-104   B3 DNA binding domain  
gene28599   0.0000001   231-288   B3 DNA binding domain  
gene28601   5.69e-23   113-209   B3 DNA binding domain  
gene28602   3.53e-21   202-298   B3 DNA binding domain  
gene28755   2.16e-21   361-459   B3 DNA binding domain  
  7.06e-19   533-628   B3 DNA binding domain  
  0.000102   223-279   B3 DNA binding domain  
gene28757   1.49e-23   10-107   B3 DNA binding domain  
  8.83e-23   358-459   B3 DNA binding domain  
  3.92e-16   234-311   B3 DNA binding domain  
  7.85e-16   536-619   B3 DNA binding domain  
gene29255   5.76e-28   115-224   B3 DNA binding domain  
gene29441   5.69e-16   66-171   B3 DNA binding domain  
gene29442   6.47e-18   17-114   B3 DNA binding domain  
gene29444   2.75e-23   1317-1417   B3 DNA binding domain  
  7.32e-22   1841-1939   B3 DNA binding domain  
  1.92e-20   1608-1704   B3 DNA binding domain  
  4.51e-20   339-431   B3 DNA binding domain  
  1.24e-18   863-968   B3 DNA binding domain  
  1.49e-17   18-95   B3 DNA binding domain  
  2.16e-17   1133-1211   B3 DNA binding domain  
  2.75e-17   658-737   B3 DNA binding domain  
  7.26e-16   1044-1128   B3 DNA binding domain  
  8.04e-16   517-604   B3 DNA binding domain  
  0.00000000000000235   2025-2123   B3 DNA binding domain  
  0.00000000000000844   1488-1581   B3 DNA binding domain  
  0.00000000000051   213-300   B3 DNA binding domain  
gene29445   4.32e-19   194-293   B3 DNA binding domain  
  4.9e-17   600-696   B3 DNA binding domain  
  1.28e-16   431-507   B3 DNA binding domain  
  0.00000000000000149   22-116   B3 DNA binding domain  
  0.00667   389-430   B3 DNA binding domain  
gene29446   3.73e-16   331-431   B3 DNA binding domain  
  0.0000000000000175   20-98   B3 DNA binding domain  
gene29447   5.1e-19   893-993   B3 DNA binding domain  
  2.75e-17   4-101   B3 DNA binding domain  
  3.34e-16   319-407   B3 DNA binding domain  
  0.00000000000000746   586-672   B3 DNA binding domain  
gene29771   1.83e-42   138-247   B3 DNA binding domain  
gene30394   1.57e-48   191-335   B3 DNA binding domain  
gene30690   1.57e-19   620-719   B3 DNA binding domain  
gene31631   8.76e-49   101-246   B3 DNA binding domain  
gene31903   0.0000000000000255   98-195   B3 DNA binding domain  
  0.000000000000392   8-84   B3 DNA binding domain  
gene31907   4.71e-17   103-194   B3 DNA binding domain  
  0.0000011   16-56   B3 DNA binding domain  
gene31908   2.75e-19   108-200   B3 DNA binding domain  
  0.000353   6-56   B3 DNA binding domain  
gene31944   0.00000000824   285-324   B3 DNA binding domain  
  0.000000188   134-173   B3 DNA binding domain  
gene31945   7.26e-19   10-112   B3 DNA binding domain  
  0.00000000000000294   463-552   B3 DNA binding domain  
  0.00000000000000981   319-401   B3 DNA binding domain  
  0.000235   253-318   B3 DNA binding domain  
gene31951   1.45e-19   13-113   B3 DNA binding domain  
gene31952   1.53e-22   9-110   B3 DNA binding domain  
  0.00000000000000235   194-289   B3 DNA binding domain  
gene31955   1.18e-23   290-390   B3 DNA binding domain  
  3.34e-21   2-97   B3 DNA binding domain  
 
Weak hits:
gene02368   0.000863   184-225   B3 DNA binding domain  
gene02371   0.022   50-74   B3 DNA binding domain  
gene12859   0.00051   190-294   B3 DNA binding domain  
gene13493   0.0863   6-63   B3 DNA binding domain  
gene14707   0.00049   128-168   B3 DNA binding domain  
gene20520   0.00451   15-67   B3 DNA binding domain  
gene28240   0.000131   176-223   B3 DNA binding domain  
  0.0726   50-126   B3 DNA binding domain  
gene31437   0.0549   690-757   B3 DNA binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

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