SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


DNA-binding pseudobarrel domain superfamily domain assignments
in
Brachypodium distachyon

Assignment details

(show help)


Brachypodium distachyon has 128 significant domains in 95 proteins.

     

Sequence ID   Evalue   Region   Family  
EG:BRADI1G14490.1   0.00000000018   33-110   B3 DNA binding domain  
EG:BRADI1G14500.1   1.65e-18   98-193   B3 DNA binding domain  
  1.84e-16   275-354   B3 DNA binding domain  
  0.00000000000000647   561-662   B3 DNA binding domain  
EG:BRADI1G14510.1   5.3e-21   17-113   B3 DNA binding domain  
  1.08e-20   344-431   B3 DNA binding domain  
  9.02e-19   553-655   B3 DNA binding domain  
EG:BRADI1G14510.2   5.1e-21   17-113   B3 DNA binding domain  
  1.06e-20   335-422   B3 DNA binding domain  
  8.83e-19   544-646   B3 DNA binding domain  
EG:BRADI1G14530.1   2.35e-20   22-121   B3 DNA binding domain  
  3.92e-20   458-565   B3 DNA binding domain  
  0.000000000000235   248-348   B3 DNA binding domain  
EG:BRADI1G14550.1   9.42e-20   16-114   B3 DNA binding domain  
  0.0000000000000759   420-520   B3 DNA binding domain  
  0.0000000000222   229-326   B3 DNA binding domain  
EG:BRADI1G14560.1   4.9e-20   435-540   B3 DNA binding domain  
  9.61e-19   51-144   B3 DNA binding domain  
  2.16e-18   291-396   B3 DNA binding domain  
EG:BRADI1G17680.1   2.62e-21   362-465   B3 DNA binding domain  
EG:BRADI1G24720.1   2.22e-20   495-601   B3 DNA binding domain  
EG:BRADI1G32547.1   1.57e-47   120-264   B3 DNA binding domain  
EG:BRADI1G33160.1   7.32e-29   134-238   B3 DNA binding domain  
EG:BRADI1G34340.1   1.83e-42   137-278   B3 DNA binding domain  
EG:BRADI1G34340.2   1.57e-42   137-278   B3 DNA binding domain  
EG:BRADI1G35587.1   4.9e-20   146-250   B3 DNA binding domain  
  0.0000000000000412   311-405   B3 DNA binding domain  
  0.0000000000104   17-122   B3 DNA binding domain  
EG:BRADI1G45517.1   4.9e-24   126-223   B3 DNA binding domain  
EG:BRADI1G46080.1   0.0000392   11-46   B3 DNA binding domain  
  0.00143   106-191   B3 DNA binding domain  
EG:BRADI1G46602.1   6.28e-43   117-256   B3 DNA binding domain  
EG:BRADI1G46602.2   6.28e-43   117-256   B3 DNA binding domain  
EG:BRADI1G48690.1   2.35e-20   630-732   B3 DNA binding domain  
  6.47e-19   275-371   B3 DNA binding domain  
EG:BRADI1G50240.1   1.08e-21   152-250   B3 DNA binding domain  
  5.76e-18   568-667   B3 DNA binding domain  
EG:BRADI1G50255.1   0.00000000106   4-46   B3 DNA binding domain  
EG:BRADI1G51730.1   0.0000000000000102   42-132   B3 DNA binding domain  
EG:BRADI1G52000.1   1.83e-25   33-130   B3 DNA binding domain  
EG:BRADI1G56850.1   0.000000255   24-107   B3 DNA binding domain  
  0.000589   176-259   B3 DNA binding domain  
EG:BRADI1G60530.1   3.53e-16   126-216   B3 DNA binding domain  
EG:BRADI1G70067.1   6.08e-18   13-107   B3 DNA binding domain  
  0.0000000000294   175-260   B3 DNA binding domain  
EG:BRADI1G72330.1   4.32e-23   128-225   B3 DNA binding domain  
EG:BRADI1G77150.1   1.29e-28   34-132   B3 DNA binding domain  
EG:BRADI2G02710.1   1.26e-30   198-287   B3 DNA binding domain  
EG:BRADI2G02720.1   8.5e-29   171-293   B3 DNA binding domain  
EG:BRADI2G05100.1   0.0000118   114-195   B3 DNA binding domain  
EG:BRADI2G07880.1   0.00000000451   247-342   B3 DNA binding domain  
EG:BRADI2G07980.1   3.73e-20   200-283   B3 DNA binding domain  
EG:BRADI2G08120.1   7.85e-34   112-247   B3 DNA binding domain  
EG:BRADI2G16610.1   8.37e-43   169-286   B3 DNA binding domain  
EG:BRADI2G16610.2   8.37e-43   169-286   B3 DNA binding domain  
EG:BRADI2G16610.4   8.24e-43   169-286   B3 DNA binding domain  
EG:BRADI2G16610.5   8.24e-43   169-286   B3 DNA binding domain  
EG:BRADI2G16610.7   8.24e-43   169-286   B3 DNA binding domain  
EG:BRADI2G17610.1   2.49e-28   211-318   B3 DNA binding domain  
EG:BRADI2G19867.1   7.59e-44   158-292   B3 DNA binding domain  
EG:BRADI2G22130.1   5.49e-25   130-226   B3 DNA binding domain  
EG:BRADI2G22130.2   2.75e-25   61-157   B3 DNA binding domain  
EG:BRADI2G37387.1   0.000000000000608   537-643   B3 DNA binding domain  
EG:BRADI2G46190.1   1.44e-41   135-244   B3 DNA binding domain  
EG:BRADI2G47220.1   2.35e-28   213-312   B3 DNA binding domain  
EG:BRADI2G48057.1   2.16e-19   87-185   B3 DNA binding domain  
EG:BRADI2G48580.1   1.49e-23   296-393   B3 DNA binding domain  
  1.35e-19   15-127   B3 DNA binding domain  
EG:BRADI2G48597.1   1.12e-18   8-113   B3 DNA binding domain  
EG:BRADI2G50120.1   4.71e-43   121-271   B3 DNA binding domain  
EG:BRADI2G58030.1   3.34e-22   84-181   B3 DNA binding domain  
  0.00000000000824   489-581   B3 DNA binding domain  
EG:BRADI2G58390.1   3.53e-22   539-634   B3 DNA binding domain  
EG:BRADI2G59480.1   3.14e-40   113-251   B3 DNA binding domain  
EG:BRADI2G60554.1   0.000000000000153   60-137   B3 DNA binding domain  
  0.000000000000667   489-613   B3 DNA binding domain  
  0.0000000000549   189-293   B3 DNA binding domain  
EG:BRADI3G03407.1   2.75e-41   126-266   B3 DNA binding domain  
EG:BRADI3G04920.1   3.53e-48   125-269   B3 DNA binding domain  
EG:BRADI3G12910.1   0.00000000000000137   240-328   B3 DNA binding domain  
EG:BRADI3G16500.1   1.31e-25   37-145   B3 DNA binding domain  
EG:BRADI3G18807.1   0.00000000000000235   55-149   B3 DNA binding domain  
EG:BRADI3G28950.1   2.62e-29   114-225   B3 DNA binding domain  
EG:BRADI3G32140.1   3.27e-28   29-119   B3 DNA binding domain  
EG:BRADI3G40437.1   8.89e-42   118-258   B3 DNA binding domain  
EG:BRADI3G40437.2   9.42e-42   118-258   B3 DNA binding domain  
EG:BRADI3G45880.1   1.2e-43   250-390   B3 DNA binding domain  
EG:BRADI3G47847.1   1.59e-16   317-420   B3 DNA binding domain  
  0.0000000000216   836-919   B3 DNA binding domain  
EG:BRADI3G47847.2   1.59e-16   317-420   B3 DNA binding domain  
  0.0000000000216   836-919   B3 DNA binding domain  
EG:BRADI3G49320.1   2.62e-29   119-235   B3 DNA binding domain  
EG:BRADI3G51840.1   0.0000000000105   86-155   B3 DNA binding domain  
EG:BRADI4G00380.1   7.46e-16   14-114   B3 DNA binding domain  
  0.000000000294   211-294   B3 DNA binding domain  
EG:BRADI4G01730.1   1.19e-47   163-305   B3 DNA binding domain  
EG:BRADI4G02950.1   7.46e-21   29-128   B3 DNA binding domain  
  0.000000000000451   316-403   B3 DNA binding domain  
EG:BRADI4G02990.1   7.06e-19   369-470   B3 DNA binding domain  
  7.46e-19   752-851   B3 DNA binding domain  
  2.16e-18   543-635   B3 DNA binding domain  
  4.32e-18   921-1011   B3 DNA binding domain  
  8.04e-18   11-99   B3 DNA binding domain  
  0.00000000902   226-270   B3 DNA binding domain  
EG:BRADI4G03000.1   2.35e-20   171-270   B3 DNA binding domain  
  3.34e-19   18-114   B3 DNA binding domain  
  0.00000000000000765   380-478   B3 DNA binding domain  
  0.0314   549-583   B3 DNA binding domain  
EG:BRADI4G07470.1   1.12e-37   129-265   B3 DNA binding domain  
EG:BRADI4G07470.2   1.12e-37   129-265   B3 DNA binding domain  
EG:BRADI4G07470.3   8.5e-38   129-265   B3 DNA binding domain  
EG:BRADI4G17410.1   6.57e-41   140-274   B3 DNA binding domain  
EG:BRADI4G17410.2   5.49e-41   140-274   B3 DNA binding domain  
EG:BRADI4G17410.3   6.57e-41   140-274   B3 DNA binding domain  
EG:BRADI4G17410.5   6.47e-23   2-99   B3 DNA binding domain  
EG:BRADI4G23270.1   5.69e-22   467-567   B3 DNA binding domain  
  3.53e-19   78-170   B3 DNA binding domain  
EG:BRADI4G23270.3   2.94e-19   78-170   B3 DNA binding domain  
EG:BRADI4G25170.1   1.57e-27   35-129   B3 DNA binding domain  
EG:BRADI4G27510.1   0.000019   37-122   B3 DNA binding domain  
EG:BRADI4G42167.1   3.92e-28   33-129   B3 DNA binding domain  
EG:BRADI5G06610.1   0.0000000902   36-107   B3 DNA binding domain  
EG:BRADI5G10910.1   0.0000000589   38-141   B3 DNA binding domain  
EG:BRADI5G10950.1   3.14e-43   119-257   B3 DNA binding domain  
EG:BRADI5G15904.1   3.01e-27   118-220   B3 DNA binding domain  
EG:BRADI5G19260.1   5.36e-29   97-200   B3 DNA binding domain  
EG:BRADI5G25157.1   2.62e-44   135-273   B3 DNA binding domain  
EG:BRADI5G25767.1   7.98e-48   122-266   B3 DNA binding domain  
EG:BRADI5G26100.1   1.82e-17   323-420   B3 DNA binding domain  
EG:BRADI5G26390.1   0.000000000334   207-302   B3 DNA binding domain  
EG:BRADI5G27400.2   2.22e-27   101-210   B3 DNA binding domain  
 
Weak hits:
EG:BRADI1G19090.1   0.0051   176-242   B3 DNA binding domain  
EG:BRADI1G24650.1   0.000589   34-131   B3 DNA binding domain  
EG:BRADI1G71850.1   0.0051   187-252   B3 DNA binding domain  
EG:BRADI2G49410.1   0.000151   358-406   B3 DNA binding domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a DNA-binding pseudobarrel domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   57946 57946
No Yes Selaginella moellendorffii   61 54
No Yes Pinus taeda Loblolly pine 54 49
No Yes Picea abies Norway spruce 29 27
No Yes Eucalyptus grandis v201 Rose gum 189 148
No Yes Theobroma cacao B97-61/B2 v1 Cacao 150 125
No Yes Gossypium raimondii v221   404 319
No Yes Citrus clementina v165   159 123
No Yes Citrus sinensis v154 Sweet orange 172 150
No Yes Thellungiella halophila v173   198 126
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 346 211
No Yes Capsella rubella v183   179 122
No Yes Arabidopsis lyrata Lyrate rockcress 225 140
No Yes Arabidopsis thaliana 10 Thale cress 224 149
No Yes Carica papaya Papaya 75 59
No Yes Medicago truncatula Barrel medic 363 273
No Yes Phaseolus vulgaris v186 French bean 133 99
No Yes Glycine max v109 Soybean 186 164
No Yes Cucumis sativus v122 Cucumber 105 89
No Yes Fragaria vesca Wild strawberry 202 132
No Yes Malus domestica v196 Apple 188 146
No Yes Prunus persica v139 Peach 143 114
No Yes Linum usitatissimum v200 Flax 224 162
No Yes Manihot esculenta v147 Cassava 184 148
No Yes Populus trichocarpa v156 Black cottonwood 212 195
No Yes Vitis vinifera Wine grape 61 50
No Yes Mimulus guttatus v140 Spotted monkey flower 118 99
No Yes Solanum lycopersicum v.2.3 Tomato 164 113
No Yes Solanum tuberosum Potato 226 171
No Yes Actinidia chinensis Hongyang   150 115
No Yes Aquilegia coerulea v195   183 147
No Yes Triticum urartu 22   181 115
No Yes Triticum aestivum 22 Bread wheat 237 190
No Yes Aegilops tauschii 22   232 142
No Yes Brachypodium distachyon Stiff brome 128 95
No Yes Oryza barthii 22 African wild rice 177 124
No Yes Oryza meridionalis 22   193 117
No Yes Oryza glumaepatula 22   181 126
No Yes Oryza glaberrima African rice 109 80
No Yes Oryza punctata 22   172 112
No Yes Oryza nivara 22   190 137
No Yes Oryza brachyantha 22 Malo sina 96 77
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 173 134
No Yes Oryza sativa v193 Rice 168 132
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 91 82
No Yes Panicum virgatum v202 Switchgrass 293 217
No Yes Setaria italica v164 Foxtail millet 153 114
No Yes Zea mays subsp. mays Maize 157 141
No Yes Zea mays v181 Maize 171 153
No Yes Sorghum bicolor Sorghum 129 94
No Yes Musa balbisiana Balbis banana 117 112
No Yes Musa acuminata 22 Wild Malaysian banana 109 107
No Yes Amborella trichopoda 22   54 49
No Yes Physcomitrella patens   68 53
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   8 8
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 140 116
No Yes Hordeum vulgare 22 Domesticated barley 308 227
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 135 95
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Lotus japonicus (Early assembly)   83 76
No Yes Malus x domestica (Duplicate) Apple 188 146
No Yes Ricinus communis (Early assembly) Castor bean 89 70
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   217 160
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 157 111
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 164 113
No Yes Phoenix dactylifera (Early draft) Date palm 47 39
No Yes Arabidopsis thaliana 10 Thale cress 188 121
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   21482 16439
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1243 923
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   19880 14856
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   28 28
No Yes TargetDB (Targets)   78 63
No Yes The Salmonella enterica Pan-genome (meta-genome)   4 4

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]