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Holliday junction resolvase RusA superfamily domain assignments
in
Candidatus Nitrospira defluvii

Assignment details

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Candidatus Nitrospira defluvii has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|302036450|ref|YP_003796772.1|   0.00000000000000615   6-125   Holliday junction resolvase RusA  

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Select to display   Genome       Domains   Proteins
No Yes ALL   66447 66447
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Rhodnius prolixus 22   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   2 2
No Yes Fragilariopsis cylindrus   9 9
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   1 1
No Yes Eggerthella lenta DSM 2243   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Gordonia sp. KTR9   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Corynebacterium aurimucosum ATCC 700975   2 2
No Yes Corynebacterium ulcerans 0102   1 1
No Yes Corynebacterium variabile DSM 44702   1 1
No Yes Leifsonia xyli subsp. xyli str. CTCB07   1 1
No Yes Jonesia denitrificans DSM 20603   2 2
No Yes Bifidobacterium bifidum S17   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Anaerococcus prevotii DSM 20548   1 1
No Yes Selenomonas sputigena ATCC 35185   1 1
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   1 1
No Yes Erysipelothrix rhusiopathiae str. Fujisawa   1 1
No Yes Natranaerobius thermophilus JW/NM-WN-LF   1 1
No Yes Eubacterium siraeum   1 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Candidatus Desulforudis audaxviator MP104C   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Desulfotomaculum reducens MI-1   1 1
No Yes Desulfotomaculum kuznetsovii DSM 6115   1 1
No Yes Desulfotomaculum carboxydivorans CO-1-SRB   1 1
No Yes Clostridium difficile 630   3 3
No Yes Clostridium sticklandii DSM 519   1 1
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Clostridium lentocellum DSM 5427   2 2
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Alkaliphilus oremlandii OhILAs   1 1
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Candidatus Arthromitus sp. SFB-mouse-Japan   1 1
No Yes Clostridium novyi NT   1 1
No Yes Clostridium ljungdahlii DSM 13528   1 1
No Yes Clostridium kluyveri DSM 555   1 1
No Yes Clostridium beijerinckii NCIMB 8052   1 1
No Yes Clostridium tetani E88   1 1
No Yes Clostridium perfringens ATCC 13124   2 2
No Yes Clostridium cellulovorans 743B   1 1
No Yes Clostridium botulinum A str. ATCC 3502   2 2
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Mahella australiensis 50-1 BON   2 2
No Yes Caldicellulosiruptor hydrothermalis 108   3 3
No Yes Caldicellulosiruptor owensensis OL   1 1
No Yes Caldicellulosiruptor lactoaceticus 6A   1 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   4 4
No Yes Caldicellulosiruptor bescii DSM 6725   2 2
No Yes Thermoanaerobacter tengcongensis MB4   1 1
No Yes Moorella thermoacetica ATCC 39073   1 1
No Yes Tetragenococcus halophilus NBRC 12172   1 1
No Yes Melissococcus plutonius DAT561   2 1
No Yes Enterococcus sp. 7L76   1 1
No Yes Enterococcus faecalis 62   2 2
No Yes Weissella koreensis KACC 15510   2 2
No Yes Leuconostoc sp. C2   1 1
No Yes Leuconostoc kimchii IMSNU 11154   2 2
No Yes Leuconostoc citreum KM20   1 1
No Yes Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293   1 1
No Yes Leuconostoc gasicomitatum LMG 18811   1 1
No Yes Lactobacillus casei ATCC 334   1 1
No Yes Lactobacillus gasseri ATCC 33323   2 2
No Yes Pediococcus pentosaceus ATCC 25745   2 2
No Yes Lactococcus garvieae ATCC 49156   1 1
No Yes Lactococcus lactis subsp. cremoris MG1363   1 1
No Yes Streptococcus gallolyticus UCN34   1 1
No Yes Streptococcus pseudopneumoniae IS7493   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis GGS_124   1 1
No Yes Streptococcus pyogenes str. Manfredo   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446   3 3
No Yes Listeria innocua Clip11262   2 2
No Yes Geobacillus thermoleovorans CCB_US3_UF5   1 1
No Yes Bacillus subtilis subsp. subtilis str. 168   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus clausii KSM-K16   1 1
No Yes Macrococcus caseolyticus JCSC5402   1 1
No Yes Staphylococcus lugdunensis HKU09-01   1 1
No Yes Staphylococcus haemolyticus JCSC1435   1 1
No Yes Staphylococcus epidermidis RP62A   1 1
No Yes Staphylococcus carnosus subsp. carnosus TM300   1 1
No Yes Staphylococcus aureus subsp. aureus JH1   2 2
No Yes Saprospira grandis str. Lewin   1 1
No Yes Bacteroides vulgatus ATCC 8482   1 1
No Yes Isosphaera pallida ATCC 43644   1 1
No Yes Marinitoga piezophila KA3   1 1
No Yes Thermovibrio ammonificans HB-1   1 1
No Yes Desulfurobacterium thermolithotrophum DSM 11699   1 1
No Yes Persephonella marina EX-H1   1 1
No Yes Hydrogenobaculum sp. SN   1 1
No Yes Hydrogenobaculum sp. HO   1 1
No Yes Hydrogenobaculum sp. Y04AAS1   1 1
No Yes Thermocrinis albus DSM 14484   1 1
No Yes Aquifex aeolicus VF5   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Ilyobacter polytropus DSM 2926   1 1
No Yes Acidithiobacillus caldus SM-1   1 1
No Yes Nitratifractor salsuginis DSM 16511   1 1
No Yes Campylobacter curvus 525.92   1 1
No Yes Campylobacter jejuni subsp. doylei 269.97   2 2
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus fulvus HW-1   2 2
No Yes Dechlorosoma suillum PS   1 1
No Yes Laribacter hongkongensis HLHK9   1 1
No Yes Neisseria gonorrhoeae NCCP11945   3 3
No Yes Burkholderia phymatum STM815   1 1
No Yes Ralstonia eutropha JMP134   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia glumae BGR1   2 2
No Yes Delftia sp. Cs1-4   1 1
No Yes Bordetella petrii DSM 12804   1 1
No Yes Bordetella avium 197N   2 2
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Methylovorus glucosetrophus SIP3-4   1 1
No Yes Parvularcula bermudensis HTCC2503   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Maricaulis maris MCS10   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Ruegeria sp. TM1040   2 2
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum brasilense Sp245   2 2
No Yes Acetobacter pasteurianus IFO 3283-01   2 2
No Yes Micavibrio aeruginosavorus ARL-13   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Methylobacterium chloromethanicum CM4   2 2
No Yes Methylobacterium extorquens AM1   2 2
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Aggregatibacter aphrophilus NJ8700   1 1
No Yes Actinobacillus succinogenes 130Z   1 1
No Yes Actinobacillus pleuropneumoniae serovar 5b str. L20   1 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Dichelobacter nodosus VCS1703A   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Xylella fastidiosa M23   2 2
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xenorhabdus bovienii SS-2004   1 1
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Proteus mirabilis HI4320   1 1
No Yes Rahnella sp. Y9602   1 1
No Yes Serratia sp. ATCC 39006   1 1
No Yes Sodalis glossinidius str. 'morsitans'   3 3
No Yes Pantoea sp. At-9b   2 2
No Yes Cronobacter turicensis z3032   2 2
No Yes Cronobacter sakazakii ES15   2 2
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   1 1
No Yes Enterobacteriaceae bacterium strain FGI 57   1 1
No Yes Shigella sonnei Ss046   4 4
No Yes Shigella flexneri 5 str. 8401   4 4
No Yes Shigella dysenteriae Sd197   1 1
No Yes Shigella boydii CDC 3083-94   3 3
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   2 2
No Yes Escherichia fergusonii ATCC 35469   3 3
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Enterobacter sp. 638   2 2
No Yes Enterobacter cloacae subsp. dissolvens SDM   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Archaeoglobus veneficus SNP6   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   2 2
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Propionibacterium acidipropionici ATCC 4875   1 1
No Yes Corynebacterium ulcerans BR-AD22   2 2
No Yes Corynebacterium argentoratense DSM 44202   1 1
No Yes Bifidobacterium longum subsp. infantis 157F   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Dehalococcoides mccartyi BTF08   1 1
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Clostridium difficile BI1   2 2
No Yes Clostridium difficile R20291   1 1
No Yes Clostridium difficile CD196   1 1
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Candidatus Arthromitus sp. SFB-rat-Yit   1 1
No Yes Candidatus Arthromitus sp. SFB-mouse-Yit   1 1
No Yes Clostridium saccharobutylicum DSM 13864   1 1
No Yes Clostridium autoethanogenum DSM 10061   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Clostridium kluyveri NBRC 12016   1 1
No Yes Clostridium tetani genome 12124569   1 1
No Yes Clostridium perfringens SM101   1 1
No Yes Clostridium perfringens str. 13   1 1
No Yes Clostridium pasteurianum BC1   2 2
No Yes Clostridium botulinum H04402 065   1 1
No Yes Clostridium botulinum BKT015925   2 2
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum E3 str. Alaska E43   1 1
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   2 2
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Thermacetogenium phaeum DSM 12270   1 1
No Yes Carnobacterium maltaromaticum LMA28   1 1
No Yes Melissococcus plutonius ATCC 35311   3 2
No Yes Enterococcus faecalis D32   1 1
No Yes Enterococcus faecalis V583   1 1
No Yes Leuconostoc gelidum JB7   1 1
No Yes Lactobacillus casei LOCK919   2 2
No Yes Lactobacillus casei W56   2 2
No Yes Lactobacillus casei LC2W   1 1
No Yes Lactobacillus casei BD-II   2 2
No Yes Lactobacillus casei BL23   2 2
No Yes Lactobacillus rhamnosus LOCK908   1 1
No Yes Lactobacillus rhamnosus LOCK900   1 1
No Yes Lactobacillus rhamnosus GG   1 1
No Yes Lactobacillus rhamnosus GG   1 1
No Yes Lactobacillus johnsonii DPC 6026   1 1
No Yes Lactobacillus plantarum 16   1 1
No Yes Lactobacillus plantarum ZJ316   1 1
No Yes Lactobacillus plantarum subsp. plantarum ST-III   1 1
No Yes Lactobacillus plantarum subsp. plantarum P-8   2 2
No Yes Lactobacillus plantarum WCFS1   2 2
No Yes Pediococcus pentosaceus SL4   2 2
No Yes Lactococcus garvieae Lg2   1 1
No Yes Lactococcus lactis subsp. lactis KLDS 4.0325   2 2
No Yes Lactococcus lactis subsp. lactis IO-1   1 1
No Yes Lactococcus lactis subsp. lactis CV56   3 3
No Yes Lactococcus lactis subsp. lactis Il1403   2 2
No Yes Lactococcus lactis subsp. cremoris A76   1 1
No Yes Lactococcus lactis subsp. cremoris NZ9000   1 1
No Yes Lactococcus lactis subsp. cremoris SK11   2 2
No Yes Streptococcus lutetiensis 033   1 1
No Yes Streptococcus iniae SF1   1 1
No Yes Streptococcus pyogenes A20   1 1
No Yes Streptococcus pyogenes Alab49   1 1
No Yes Streptococcus pyogenes MGAS10270   1 1
No Yes Streptococcus pyogenes MGAS2096   1 1
No Yes Streptococcus pyogenes MGAS6180   1 1
No Yes Streptococcus pyogenes NZ131   1 1
No Yes Streptococcus pyogenes MGAS8232   1 1
No Yes Streptococcus pyogenes MGAS315   1 1
No Yes Streptococcus pyogenes SSI-1   1 1
No Yes Streptococcus pyogenes M1 476   1 1
No Yes Streptococcus pyogenes MGAS5005   1 1
No Yes Streptococcus pyogenes M1 GAS   1 1
No Yes Streptococcus pneumoniae ST556   1 1
No Yes Streptococcus pneumoniae ATCC 700669   1 1
No Yes Streptococcus pneumoniae JJA   1 1
No Yes Streptococcus pneumoniae Hungary19A-6   1 1
No Yes Streptococcus pneumoniae 670-6B   1 1
No Yes Streptococcus agalactiae ILRI005   1 1
No Yes Streptococcus agalactiae 2603V/R   1 1
No Yes Streptococcus suis ST1   1 1
No Yes Streptococcus salivarius JIM8777   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   2 2
No Yes Paenibacillus larvae subsp. larvae DSM 25430   1 1
No Yes Listeria monocytogenes SLCC7179   1 1
No Yes Listeria monocytogenes J0161   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   1 1
No Yes Bacillus amyloliquefaciens Y2   1 1
No Yes Bacillus amyloliquefaciens IT-45   1 1
No Yes Bacillus amyloliquefaciens XH7   1 1
No Yes Bacillus amyloliquefaciens TA208   1 1
No Yes Bacillus subtilis PY79   1 1
No Yes Bacillus subtilis BSn5   1 1
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   1 1
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Staphylococcus aureus subsp. aureus MSHR1132   1 1
No Yes Staphylococcus lugdunensis N920143   1 1
No Yes Staphylococcus warneri SG1   1 1
No Yes Staphylococcus aureus CA-347   2 2
No Yes Staphylococcus aureus 04-02981   1 1
No Yes Staphylococcus aureus subsp. aureus Z172   2 2
No Yes Staphylococcus aureus subsp. aureus CN1   1 1
No Yes Staphylococcus aureus subsp. aureus 11819-97   2 2
No Yes Staphylococcus aureus subsp. aureus HO 5096 0412   1 1
No Yes Staphylococcus aureus subsp. aureus T0131   1 1
No Yes Staphylococcus aureus subsp. aureus ECT-R 2   1 1
No Yes Staphylococcus aureus subsp. aureus JKD6159   1 1
No Yes Staphylococcus aureus subsp. aureus ED133   1 1
No Yes Staphylococcus aureus subsp. aureus ED98   1 1
No Yes Staphylococcus aureus subsp. aureus TW20   3 3
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   1 1
No Yes Staphylococcus aureus subsp. aureus 71193   1 1
No Yes Staphylococcus aureus subsp. aureus str. Newman   4 4
No Yes Staphylococcus aureus subsp. aureus Mu3   1 1
No Yes Staphylococcus aureus subsp. aureus USA300_TCH1516   1 1
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   1 1
No Yes Staphylococcus aureus subsp. aureus JH9   2 2
No Yes Staphylococcus aureus subsp. aureus MSSA476   1 1
No Yes Staphylococcus aureus subsp. aureus MW2   1 1
No Yes Staphylococcus aureus subsp. aureus N315   1 1
No Yes Staphylococcus aureus subsp. aureus Mu50   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Fusobacterium nucleatum subsp. vincentii 3_1_36A2   2 2
No Yes Campylobacter jejuni Waterborne C.jejuni Outbreak   1 1
No Yes Campylobacter jejuni RM1221   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria gonorrhoeae TCDC-NG08107   3 3
No Yes Neisseria gonorrhoeae FA 1090   2 2
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Caulobacter crescentus CB15   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Acetobacter pasteurianus 386B   1 1
No Yes Acetobacter pasteurianus IFO 3283-12   2 2
No Yes Acetobacter pasteurianus IFO 3283-01-42C   2 2
No Yes Acetobacter pasteurianus IFO 3283-32   2 2
No Yes Acetobacter pasteurianus IFO 3283-26   2 2
No Yes Acetobacter pasteurianus IFO 3283-22   2 2
No Yes Acetobacter pasteurianus IFO 3283-07   2 2
No Yes Acetobacter pasteurianus IFO 3283-03   2 2
No Yes Methylobacterium extorquens PA1   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Bartonella australis Aust/NH1   2 2
No Yes Mannheimia haemolytica M42548   1 1
No Yes Mannheimia haemolytica D174   1 1
No Yes Mannheimia haemolytica D171   1 1
No Yes Mannheimia haemolytica D153   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   1 1
No Yes Haemophilus influenzae F3047   1 1
No Yes Actinobacillus suis H91-0380   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Glaciecola psychrophila 170   1 1
No Yes Stenotrophomonas maltophilia JV3   1 1
No Yes Xylella fastidiosa subsp. fastidiosa GB514   2 2
No Yes Xylella fastidiosa M12   2 2
No Yes Xylella fastidiosa Temecula1   1 1
No Yes Xylella fastidiosa 9a5c   1 1
No Yes Proteus mirabilis BB2000   1 1
No Yes Edwardsiella tarda C07-087   1 1
No Yes Edwardsiella tarda FL6-60   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   2 2
No Yes Cronobacter sakazakii CMCC 45402   2 2
No Yes Cronobacter sakazakii SP291   2 2
No Yes Cronobacter sakazakii ATCC BAA-894   3 3
No Yes Shigella sonnei 53G   4 4
No Yes Shigella flexneri 2002017   3 3
No Yes Shigella flexneri 2a str. 2457T   3 3
No Yes Shigella flexneri 2a str. 301   3 3
No Yes Shigella dysenteriae 1617   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   2 2
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   2 2
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   2 2
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E24377A   3 3
No Yes Escherichia coli E. coli PMV-1   6 6
No Yes Escherichia coli JJ1886   4 4
No Yes Escherichia coli APEC O78   3 3
No Yes Escherichia coli O7:K1 str. CE10   4 4
No Yes Escherichia coli O104:H4 str. 2009EL-2050   4 4
No Yes Escherichia coli O104:H4 str. 2009EL-2071   5 5
No Yes Escherichia coli O104:H4 str. 2011C-3493   4 4
No Yes Escherichia coli NA114   2 2
No Yes Escherichia coli P12b   4 4
No Yes Escherichia coli str. 'clone D i2'   2 2
No Yes Escherichia coli str. 'clone D i14'   2 2
No Yes Escherichia coli UM146   4 4
No Yes Escherichia coli 042   3 3
No Yes Escherichia coli Xuzhou21   7 7
No Yes Escherichia coli IHE3034   7 7
No Yes Escherichia coli UMNK88   4 4
No Yes Escherichia coli O83:H1 str. NRG 857C   2 2
No Yes Escherichia coli ABU 83972   2 2
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli LF82   2 2
No Yes Escherichia coli ED1a   5 5
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   4 4
No Yes Escherichia coli 55989   4 4
No Yes Escherichia coli S88   6 6
No Yes Escherichia coli IAI1   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli SE11   2 2
No Yes Escherichia coli APEC O1   6 6
No Yes Escherichia coli O103:H2 str. 12009   8 8
No Yes Escherichia coli UTI89   5 5
No Yes Escherichia coli 536   1 1
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli ETEC H10407   5 5
No Yes Escherichia coli O55:H7 str. RM12579   6 6
No Yes Escherichia coli O55:H7 str. CB9615   5 5
No Yes Escherichia coli O26:H11 str. 11368   9 9
No Yes Escherichia coli CFT073   3 3
No Yes Escherichia coli O111:H- str. 11128   6 6
No Yes Escherichia coli O127:H6 str. E2348/69   4 4
No Yes Escherichia coli O157:H7 str. TW14359   9 9
No Yes Escherichia coli O157:H7 str. EC4115   9 9
No Yes Escherichia coli O157:H7 str. Sakai   7 7
No Yes Escherichia coli O157:H7 str. EDL933   7 7
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli str. K-12 substr. MG1655   1 1
No Yes Escherichia coli str. K-12 substr. W3110   1 1
No Yes Escherichia coli str. K-12 substr. DH10B   1 1
No Yes Escherichia coli B str. REL606   1 1
No Yes Enterobacter cloacae SCF1   1 1
No Yes Enterobacter cloacae EcWSU1   1 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter baumannii TYTH-1   1 1
No Yes Acinetobacter baumannii BJAB0868   1 1
No Yes Acinetobacter baumannii BJAB0715   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii TCDC-AB0715   2 2
No Yes Acinetobacter baumannii AYE   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   1 1
No Yes Acinetobacter baumannii AB0057   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes 1_050719N (meta-genome)   8 8
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   2 2
No Yes 3_050719R (meta-genome)   4 4
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   4 4
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   14 14
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   8 8
No Yes Bath Hot Springs, filamentous community (meta-genome)   2 2
No Yes Bath Hot Springs, planktonic community (meta-genome)   2 2
No Yes Combined (meta-genome)   9 9
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   13 13
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   2 2
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   52 52
No Yes Dump top (Dump top) (meta-genome)   26 26
No Yes Fungus garden combined (combined) (meta-genome)   5 5
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   13 13
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   24 24
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP10 from Narrow Gauge (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   4 4
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   8 8
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   10 10
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   4 4
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   5 5
No Yes Mouse Gut Community lean3 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   57547 57292
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   6 6
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   5 5
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   11 11
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   4 4
No Yes STRING v9.0.5 (STRING)   338 338
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   3 3
No Yes Uniprot 2018_03 genome   6534 6526
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   5 5
No Yes Global Ocean Sampling Expedition (GOS)   210 210
No Yes NCBI plasmid sequences (Plasmids)   24 22
No Yes NCBI viral sequences (Viral)   184 184
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   7 7
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   21 21
No Yes TargetDB (Targets)   7 7
No Yes The Salmonella enterica Pan-genome (meta-genome)   14 14
No Yes UniProt viral sequences (Viral)   98 98

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