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CCHHC domain superfamily domain assignments
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Sinorhizobium medicae WSM419


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Select to display   Genome       Domains   Proteins
No Yes ALL   35807 35807
No Yes Homo sapiens 76_38 Human 83 26
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 22 6
No Yes Gorilla gorilla 76_3.1 Western gorilla 34 8
No Yes Pongo abelii 76_2 Sumatran orangutan 22 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 21 6
No Yes Papio anubis 76 Olive baboon 21 5
No Yes Macaca mulatta 76_1 Rhesus monkey 27 6
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 39 11
No Yes Otolemur garnettii 76_3 Small-eared galago 21 6
No Yes Microcebus murinus 76_1 Gray mouse lemur 20 7
No Yes Rattus norvegicus 76_5.0 Norway rat 27 7
No Yes Mus musculus 76_38 House mouse 87 20
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 20 5
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 20 5
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 15 4
No Yes Cavia porcellus 76_3 Domestic guinea pig 21 5
No Yes Oryctolagus cuniculus 76_2 Rabbit 26 6
No Yes Ochotona princeps 76 American pika 21 6
No Yes Tupaia belangeri 76 Northern tree shrew 14 4
No Yes Sus scrofa 76_10.2 Pig 15 5
No Yes Bos taurus 76_3.1 Cattle 17 5
No Yes Ovis aries 76_3.1 Sheep 20 6
No Yes Vicugna pacos 76_1 Alpaca 4 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 21 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 21 5
No Yes Ailuropoda melanoleuca 76_1 Giant panda 27 7
No Yes Canis familiaris 76_3.1 Dog 36 9
No Yes Felis catus 76_6.2 Domestic cat 20 4
No Yes Equus caballus 76_2 Horse 22 6
No Yes Myotis lucifugus 76_2.0 Little brown bat 21 5
No Yes Pteropus vampyrus 76_1 Large flying fox 18 5
No Yes Sorex araneus 76_1 European shrew 9 2
No Yes Erinaceus europaeus 76 Western European hedgehog 14 6
No Yes Procavia capensis 76_1 Cape rock hyrax 18 5
No Yes Loxodonta africana 76_3 African savanna elephant 33 8
No Yes Echinops telfairi 76 Small Madagascar hedgehog 12 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 24 5
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 11 4
No Yes Macropus eugenii 76_1.0 Tammar wallaby 15 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 26 7
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 21 5
No Yes Ornithorhynchus anatinus 76_5 Platypus 21 5
No Yes Saccoglossus kowalevskii v3.0   78 31
No Yes Petromyzon marinus 76_7.0 Sea lamprey 12 5
No Yes Meleagris gallopavo 76_2 Turkey 20 7
No Yes Gallus gallus 76_4 Chicken 22 5
No Yes Anas platyrhynchos 76_1.0 Mallard 22 6
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 23 6
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 20 5
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 23 7
No Yes Anolis carolinensis 76_2.0 Green anole 26 6
No Yes Xenopus laevis African clawed frog 35 10
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 21 6
No Yes Latimeria chalumnae 76_1 Coelacanth 22 7
No Yes Lepisosteus oculatus 76 Spotted gar 52 11
No Yes Gadus morhua 76_1 Atlantic cod 28 9
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 43 11
No Yes Takifugu rubripes 76_4 Torafugu 147 42
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 35 10
No Yes Oryzias latipes 76_1 Japanese medaka 36 9
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 29 8
No Yes Poecilia formosa 76 Amazon molly 33 9
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 62 16
No Yes Astyanax mexicanus 76 Mexican tetra 37 8
No Yes Danio rerio 76_9 Zebrafish 59 19
No Yes Oikopleura dioica   5 3
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 6 3
No Yes Ciona intestinalis 76 Vase tunicate 6 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 11 4
No Yes Octopus bimaculoides 280   8 6
No Yes Crassostrea gigas 22 Pacific oyster 8 5
No Yes Lottia gigantea Owl limpet 8 2
No Yes Helobdella robusta   4 3
No Yes Capitella sp. I   10 5
No Yes Danaus plexippus OGS1.0 Monarch butterfly 4 2
No Yes Heliconius melpomene Postman butterfly 6 2
No Yes Bombyx mori Domestic silkworm 3 2
No Yes Nasonia vitripennis Jewel wasp 6 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 12 7
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 6 2
No Yes Linepithema humile v1.1 Argentine ant 6 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 6 6
No Yes Solenopsis invicta v.2.2.3 Red fire ant 6 4
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 6 2
No Yes Atta cephalotes v1.1   4 3
No Yes Camponotus floridanus v3.3 Florida carpenter ant 7 2
No Yes Lucilia cuprina Australian sheep blowfly 6 3
No Yes Drosophila grimshawi 1.3   4 2
No Yes Drosophila willistoni 1.3   4 2
No Yes Drosophila pseudoobscura 2.13   4 2
No Yes Drosophila persimilis 1.3   4 3
No Yes Drosophila suzukii   4 2
No Yes Drosophila yakuba 1.3   4 2
No Yes Drosophila simulans 1.3   2 2
No Yes Drosophila sechellia 1.3   4 2
No Yes Drosophila melanogaster 76_5 Fruit fly 17 8
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   4 2
No Yes Drosophila virilis 1.2   4 2
No Yes Drosophila mojavensis 1.3   3 2
No Yes Megaselia scalaris 22   4 3
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 8 3
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 2
No Yes Anopheles darlingi 22 American malaria mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 7 3
No Yes Tribolium castaneum 3.0 Red flour beetle 7 4
No Yes Pediculus humanus corporis (Early assembly) Human body louse 9 3
No Yes Acyrthosiphon pisum Pea aphid 2 2
No Yes Rhodnius prolixus 22   2 2
No Yes Daphnia pulex Common water flea 5 3
No Yes Strigamia maritima 22   9 4
No Yes Sarcoptes scabiei   3 2
No Yes Tetranychus urticae Two-spotted spider mite 6 3
No Yes Ixodes scapularis (Preliminary) Black-legged tick 4 2
No Yes Meloidogyne incognita Southern root-knot nematode 2 1
No Yes Onchocerca volvulus 22   2 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   2 1
No Yes Caenorhabditis brenneri   5 3
No Yes Caenorhabditis remanei   3 2
No Yes Caenorhabditis elegans 76_235 Roundworm 4 2
No Yes Caenorhabditis briggsae 2   2 1
No Yes Trichinella spiralis 22   3 1
No Yes Hymenolepis microstoma   3 2
No Yes Echinococcus multilocularis   3 2
No Yes Echinococcus granulosus   3 2
No Yes Taenia solium Pork tapeworm 2 2
No Yes Schistosoma mansoni   3 2
No Yes Acropora digitifera v1.0   5 4
No Yes Nematostella vectensis 1.0 Starlet sea anemone 6 3
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   2 1
No Yes Monosiga brevicollis   1 1
No Yes Sphaeroforma arctica JP610   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 23 8
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 4 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 8 3
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 2 1
No Yes Homo sapiens 75_37 (old version GRC) Human 57 23
No Yes Homo sapiens (NCBI version) Human 26 10
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 21 5
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 21 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 22 6
No Yes Gorilla gorilla 69_3.1 Western gorilla 20 5
No Yes Pongo abelii 69_2 Sumatran orangutan 14 3
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 20 5
No Yes Macaca mulatta 69_1 Rhesus monkey 19 3
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 14 4
No Yes Otolemur garnettii 69_3 Small-eared galago 21 6
No Yes Microcebus murinus 69_1 Gray mouse lemur 20 7
No Yes Rattus norvegicus 69_3.4 Norway rat 21 5
No Yes Mus musculus 69_38 House mouse 21 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 20 5
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 20 5
No Yes Cavia porcellus 69_3 Domestic guinea pig 21 5
No Yes Oryctolagus cuniculus 69_2 Rabbit 21 5
No Yes Ochotona princeps 69 American pika 21 6
No Yes Tupaia belangeri 69 Northern tree shrew 14 4
No Yes Sus scrofa 69_10.2 Pig 15 5
No Yes Bos taurus 69_3.1 Cattle 16 4
No Yes Vicugna pacos 69_1 Alpaca 4 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 21 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 21 5
No Yes Ailuropoda melanoleuca 69_1 Giant panda 21 5
No Yes Canis familiaris 69_3.1 Dog 22 6
No Yes Felis catus 69 Domestic cat 15 5
No Yes Equus caballus 69_2 Horse 22 6
No Yes Myotis lucifugus 69_2.0 Little brown bat 21 5
No Yes Pteropus vampyrus 69_1 Large flying fox 18 5
No Yes Sorex araneus 69_1 European shrew 9 2
No Yes Erinaceus europaeus 69 Western European hedgehog 14 6
No Yes Procavia capensis 69_1 Cape rock hyrax 18 5
No Yes Loxodonta africana 69_3 African savanna elephant 20 5
No Yes Echinops telfairi 69 Small Madagascar hedgehog 12 4
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 17 5
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 11 4
No Yes Macropus eugenii 69_1.0 Tammar wallaby 15 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 19 5
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 21 5
No Yes Ornithorhynchus anatinus 69_5 Platypus 21 5
No Yes Petromyzon marinus 69_7.0 Sea lamprey 9 4
No Yes Meleagris gallopavo 69_2 Turkey 19 6
No Yes Gallus gallus 69_2 Chicken 21 5
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 23 6
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 21 5
No Yes Anolis carolinensis 69_2.0 Green anole 20 5
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 20 5
No Yes Latimeria chalumnae 69_1 Coelacanth 18 5
No Yes Gadus morhua 69_1 Atlantic cod 28 9
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 33 9
No Yes Takifugu rubripes 69_4 Torafugu 32 9
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 35 10
No Yes Oryzias latipes 69_1 Japanese medaka 30 7
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 29 8
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 32 9
No Yes Danio rerio 69_9 Zebrafish 33 9
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 6 3
No Yes Ciona intestinalis 69 Vase tunicate 6 3
No Yes Drosophila melanogaster 69_5 Fruit fly 5 2
No Yes Caenorhabditis elegans 69_215 Roundworm 2 1
No Yes NCBI 2017_08 genome   23527 5520
No Yes STRING v9.0.5 (STRING)   674 204
No Yes Uniprot 2018_03 genome   6386 2226
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   7 5
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   7 7
No Yes TargetDB (Targets)   6 4

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