SUPERFAMILY 1.75 HMM library and genome assignments server

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Transcriptional repressor TraM superfamily domain assignments
in
Brachypodium distachyon

Network of domain occurrence in all genomes



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View all assignments containing a Transcriptional repressor TraM domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   648 648
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium vitis S4   2 2
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   2 2
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes NCBI 2017_08 genome   342 342
No Yes STRING v9.0.5 (STRING)   7 7
No Yes Uniprot 2018_03 genome   203 203
No Yes NCBI plasmid sequences (Plasmids)   26 26
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   12 12
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   34 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]