SUPERFAMILY 1.75 HMM library and genome assignments server

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KRAB domain (Kruppel-associated box) superfamily domain assignments
in
all archaeal genomes


No domain assignments for these genomes.


Add assignments from groups of genomes

View all assignments containing a KRAB domain (Kruppel-associated box) domain in each group of genomes.

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Add assignments from individual genomes

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Select to display   Genome       Domains   Proteins
No Yes ALL   125385 125385
No Yes Homo sapiens 76_38 Human 1581 1566
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 349 343
No Yes Gorilla gorilla 76_3.1 Western gorilla 368 363
No Yes Pongo abelii 76_2 Sumatran orangutan 327 321
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 304 298
No Yes Papio anubis 76 Olive baboon 370 363
No Yes Macaca mulatta 76_1 Rhesus monkey 575 570
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 517 512
No Yes Otolemur garnettii 76_3 Small-eared galago 253 249
No Yes Microcebus murinus 76_1 Gray mouse lemur 149 147
No Yes Rattus norvegicus 76_5.0 Norway rat 236 230
No Yes Mus musculus 76_38 House mouse 712 704
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 70 70
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 88 85
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 168 161
No Yes Cavia porcellus 76_3 Domestic guinea pig 30 29
No Yes Oryctolagus cuniculus 76_2 Rabbit 99 98
No Yes Ochotona princeps 76 American pika 85 85
No Yes Tupaia belangeri 76 Northern tree shrew 190 189
No Yes Sus scrofa 76_10.2 Pig 198 195
No Yes Bos taurus 76_3.1 Cattle 248 245
No Yes Ovis aries 76_3.1 Sheep 241 232
No Yes Vicugna pacos 76_1 Alpaca 102 101
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 189 186
No Yes Mustela putorius furo 76_1.0 Domestic ferret 211 205
No Yes Ailuropoda melanoleuca 76_1 Giant panda 272 264
No Yes Canis familiaris 76_3.1 Dog 249 243
No Yes Felis catus 76_6.2 Domestic cat 209 203
No Yes Equus caballus 76_2 Horse 266 265
No Yes Myotis lucifugus 76_2.0 Little brown bat 145 145
No Yes Pteropus vampyrus 76_1 Large flying fox 155 153
No Yes Sorex araneus 76_1 European shrew 52 52
No Yes Erinaceus europaeus 76 Western European hedgehog 47 46
No Yes Procavia capensis 76_1 Cape rock hyrax 115 115
No Yes Loxodonta africana 76_3 African savanna elephant 62 60
No Yes Echinops telfairi 76 Small Madagascar hedgehog 95 95
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 189 183
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 132 128
No Yes Macropus eugenii 76_1.0 Tammar wallaby 39 38
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 203 202
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 467 463
No Yes Ornithorhynchus anatinus 76_5 Platypus 38 38
No Yes Meleagris gallopavo 76_2 Turkey 26 26
No Yes Gallus gallus 76_4 Chicken 17 17
No Yes Anas platyrhynchos 76_1.0 Mallard 10 10
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 2 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 7 7
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 129 123
No Yes Anolis carolinensis 76_2.0 Green anole 141 140
No Yes Xenopus laevis African clawed frog 15 15
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 37 37
No Yes Latimeria chalumnae 76_1 Coelacanth 12 12
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 56 55
No Yes Homo sapiens 75_37 (old version GRC) Human 1614 1600
No Yes Homo sapiens (NCBI version) Human 571 563
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 346 343
No Yes Homo sapiens 69_37 Human 423 416
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 309 303
No Yes Gorilla gorilla 69_3.1 Western gorilla 273 268
No Yes Pongo abelii 69_2 Sumatran orangutan 312 306
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 304 299
No Yes Macaca mulatta 69_1 Rhesus monkey 322 318
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 259 255
No Yes Otolemur garnettii 69_3 Small-eared galago 244 240
No Yes Microcebus murinus 69_1 Gray mouse lemur 149 147
No Yes Rattus norvegicus 69_3.4 Norway rat 206 204
No Yes Mus musculus 69_38 House mouse 353 350
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 70 70
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 86 83
No Yes Cavia porcellus 69_3 Domestic guinea pig 24 23
No Yes Oryctolagus cuniculus 69_2 Rabbit 43 43
No Yes Ochotona princeps 69 American pika 85 85
No Yes Tupaia belangeri 69 Northern tree shrew 190 189
No Yes Sus scrofa 69_10.2 Pig 176 173
No Yes Bos taurus 69_3.1 Cattle 215 212
No Yes Vicugna pacos 69_1 Alpaca 102 101
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 189 186
No Yes Mustela putorius furo 69_1.0 Domestic ferret 211 205
No Yes Ailuropoda melanoleuca 69_1 Giant panda 207 201
No Yes Canis familiaris 69_3.1 Dog 196 192
No Yes Felis catus 69 Domestic cat 133 130
No Yes Equus caballus 69_2 Horse 216 215
No Yes Myotis lucifugus 69_2.0 Little brown bat 136 136
No Yes Pteropus vampyrus 69_1 Large flying fox 155 153
No Yes Sorex araneus 69_1 European shrew 52 52
No Yes Erinaceus europaeus 69 Western European hedgehog 47 46
No Yes Procavia capensis 69_1 Cape rock hyrax 115 115
No Yes Loxodonta africana 69_3 African savanna elephant 54 53
No Yes Echinops telfairi 69 Small Madagascar hedgehog 95 95
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 129 128
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 132 128
No Yes Macropus eugenii 69_1.0 Tammar wallaby 39 38
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 198 197
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 451 447
No Yes Ornithorhynchus anatinus 69_5 Platypus 33 33
No Yes Meleagris gallopavo 69_2 Turkey 17 17
No Yes Gallus gallus 69_2 Chicken 28 28
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 2 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 116 110
No Yes Anolis carolinensis 69_2.0 Green anole 103 102
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 31 31
No Yes Latimeria chalumnae 69_1 Coelacanth 12 12
No Yes NCBI 2017_08 genome   65710 63839
No Yes STRING v9.0.5 (STRING)   3383 3342
No Yes Uniprot 2018_03 genome   24944 24364
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2 2
No Yes TargetDB (Targets)   60 60

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