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TmoB-like superfamily domain assignments
in
all bacterial and archaeal genomes

Network of domain occurrence in all genomes


Assignment details

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24 selected genomes have 28 significant domains in 28 proteins.


Pseudonocardia dioxanivorans CB1190 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|331694684|ref|YP_004330923.1|   2.62e-17   19-95   TmoB-like  
gi|331695017|ref|YP_004331256.1|   0.000000000458   5-86   TmoB-like  
gi|331695290|ref|YP_004331529.1|   3.4e-17   13-90   TmoB-like  
gi|331699784|ref|YP_004336023.1|   4.18e-19   4-78   TmoB-like  

Gordonia polyisoprenivorans VH2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|378716386|ref|YP_005281275.1|   7.85e-19   6-83   TmoB-like  

Thermomicrobium roseum DSM 5159 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|221636326|ref|YP_002524202.1|   1.31e-22   4-80   TmoB-like  

Sulfobacillus acidophilus DSM 10332 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|379008684|ref|YP_005258135.1|   2.22e-18   2-78   TmoB-like  

Kyrpidia tusciae DSM 2912 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|295696663|ref|YP_003589901.1|   3.79e-20   4-82   TmoB-like  

Dechloromonas aromatica RCB has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|71909430|ref|YP_287017.1|   1.7e-34   3-84   TmoB-like  

Methylibium petroleiphilum PM1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|124266008|ref|YP_001020012.1|   1.57e-31   3-84   TmoB-like  
gi|124267726|ref|YP_001021730.1|   3.66e-29   3-84   TmoB-like  

Ralstonia eutropha JMP134 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|73539500|ref|YP_299867.1|   2.48e-35   3-85   TmoB-like  

Cupriavidus taiwanensis LMG 19424 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|188591693|ref|YP_001796292.1|   9.42e-35   3-85   TmoB-like  

Cupriavidus metallidurans CH34 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|94310257|ref|YP_583467.1|   1.07e-36   3-84   TmoB-like  

Cupriavidus necator N-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|339328982|ref|YP_004688674.1|   3.27e-34   3-85   TmoB-like  

Ralstonia pickettii 12D has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|241665130|ref|YP_002983489.1|   1.44e-34   3-85   TmoB-like  

Burkholderia sp. CCGE1002 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|295701166|ref|YP_003610167.1|   9.02e-33   3-85   TmoB-like  

Xanthobacter autotrophicus Py2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|154243732|ref|YP_001409305.1|   1.7e-27   3-87   TmoB-like  

Hyphomicrobium sp. MC1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|338739071|ref|YP_004676033.1|   0.000000000000196   5-85   TmoB-like  

Pseudoxanthomonas spadix BD-a59 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|357416554|ref|YP_004929574.1|   2.09e-34   3-84   TmoB-like  

Frankia sp. CcI3 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|86738930|ref|YP_479330.1|   3.4e-26   3-82   TmoB-like  

Sulfobacillus acidophilus TPY has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|339626934|ref|YP_004718577.1|   2.22e-18   2-78   TmoB-like  

Burkholderia phenoliruptrix BR3459a has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|407711374|ref|YP_006836147.1|   1.96e-34   3-85   TmoB-like  

Pandoraea pnomenusa 3kgm has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|560141853|ref|YP_008834708.1|   1.57e-36   17-98   TmoB-like  

Ralstonia pickettii 12J has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|187926800|ref|YP_001893145.1|   1.44e-34   3-85   TmoB-like  

Bradyrhizobium sp. BTAi1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|148253132|ref|YP_001237717.1|   4.84e-20   25-102   TmoB-like  

Bradyrhizobium oligotrophicum S58 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|459287507|ref|YP_007510664.1|   3.66e-20   3-81   TmoB-like  

Cycloclasticus zancles 7-ME has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|529065607|ref|YP_008374770.1|   1.57e-34   12-92   TmoB-like  

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View all assignments containing a TmoB-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   709 709
No Yes Pseudonocardia dioxanivorans CB1190   4 4
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Sulfobacillus acidophilus DSM 10332   1 1
No Yes Kyrpidia tusciae DSM 2912   1 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Methylibium petroleiphilum PM1   2 2
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   1 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Frankia sp. CcI3   1 1
No Yes Sulfobacillus acidophilus TPY   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Cycloclasticus zancles 7-ME   1 1
No Yes NCBI 2017_08 genome   262 262
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   12 12
No Yes Uniprot 2018_03 genome   192 192
No Yes NCBI plasmid sequences (Plasmids)   6 6
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   46 46
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   131 131

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