SUPERFAMILY 1.75 HMM library and genome assignments server

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Hypothetical protein PA1324 superfamily domain assignments
in
Vibrio vulnificus YJ016


No domain assignments for these genomes.


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View all assignments containing a Hypothetical protein PA1324 domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   121293 121293
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Poecilia formosa 76 Amazon molly 1 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Hymenolepis microstoma   1 1
No Yes Taenia solium Pork tapeworm 1 1
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Sphaeroforma arctica JP610   43 16
No Yes Aspergillus zonatus v1.0   10 2
No Yes Dictyostelium discoideum   112 4
No Yes Dictyostelium purpureum   99 5
No Yes Eucalyptus grandis v201 Rose gum 1 1
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 1 1
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Carica papaya Papaya 1 1
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Vitis vinifera Wine grape 1 1
No Yes Aquilegia coerulea v195   1 1
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 1 1
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Zea mays subsp. mays Maize 1 1
No Yes Zea mays v181 Maize 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 1 1
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Thalassiosira pseudonana CCMP1335   24 10
No Yes Emiliania huxleyi CCMP1516   3 1
No Yes Leptolyngbya sp. PCC 7376   7 2
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Microcoleus sp. PCC 7113   2 2
No Yes Trichodesmium erythraeum IMS101   21 3
No Yes Geitlerinema sp. PCC 7407   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Rivularia sp. PCC 7116   25 7
No Yes Calothrix sp. PCC 7507   5 3
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes 'Nostoc azollae' 0708   4 1
No Yes Nostoc sp. PCC 7107   3 3
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   10 3
No Yes Nostoc sp. PCC 7524   5 4
No Yes Anabaena sp. 90   1 1
No Yes Conexibacter woesei DSM 14684   11 6
No Yes Ilumatobacter coccineus   75 3
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Frankia symbiont of Datisca glomerata   1 1
No Yes Kitasatospora setae KM-6054   2 2
No Yes Streptomyces bingchenggensis BCW-1   2 2
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Actinosynnema mirum DSM 43827   53 21
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Pseudonocardia dioxanivorans CB1190   2 2
No Yes Saccharopolyspora erythraea NRRL 2338   2 1
No Yes Amycolatopsis mediterranei U32   7 4
No Yes Kribbella flavida DSM 17836   1 1
No Yes Gordonia sp. KTR9   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Corynebacterium ulcerans 0102   8 2
No Yes Corynebacterium urealyticum DSM 7109   1 1
No Yes Corynebacterium pseudotuberculosis 316   3 1
No Yes Corynebacterium diphtheriae NCTC 13129   4 3
No Yes Isoptericola variabilis 225   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter arilaitensis Re117   3 2
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   2 2
No Yes Renibacterium salmoninarum ATCC 33209   9 2
No Yes Bifidobacterium dentium Bd1   1 1
No Yes Bifidobacterium bifidum S17   1 1
No Yes Arcanobacterium haemolyticum DSM 20595   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   6 6
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Herpetosiphon aurantiacus DSM 785   17 1
No Yes Roseiflexus sp. RS-1   24 4
No Yes Roseiflexus castenholzii DSM 13941   29 4
No Yes Chloroflexus sp. MS-G   41 4
No Yes Chloroflexus sp. Y-400-fl   49 3
No Yes Chloroflexus aggregans DSM 9485   51 3
No Yes Chloroflexus aurantiacus J-10-fl   49 3
No Yes Deinococcus gobiensis I-0   3 3
No Yes Deinococcus deserti VCD115   3 3
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Deinococcus geothermalis DSM 11300   3 3
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Deinococcus radiodurans R1   2 2
No Yes Oceanithermus profundus DSM 14977   3 3
No Yes Meiothermus silvanus DSM 9946   2 2
No Yes Meiothermus ruber DSM 1279   2 2
No Yes Thermus sp. CCB_US3_UF1   3 2
No Yes Thermus scotoductus SA-01   2 1
No Yes Thermus thermophilus HB27   1 1
No Yes Anaerococcus prevotii DSM 20548   1 1
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   1 1
No Yes Faecalibacterium prausnitzii   1 1
No Yes Ruminococcus bromii   1 1
No Yes Ruminococcus albus 7   4 2
No Yes Eubacterium limosum KIST612   3 2
No Yes Filifactor alocis ATCC 35896   2 2
No Yes Clostridium phytofermentans ISDg   1 1
No Yes Coprococcus sp. ART55/1   1 1
No Yes Clostridium perfringens ATCC 13124   1 1
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Caldicellulosiruptor kronotskyensis 2002   1 1
No Yes Halanaerobium hydrogeniformans   2 2
No Yes Halanaerobium praevalens DSM 2228   1 1
No Yes Carnobacterium sp. 17-4   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Exiguobacterium sp. MH3   1 1
No Yes Exiguobacterium sibiricum 255-15   1 1
No Yes Paenibacillus sp. JDR-2   1 1
No Yes Listeria welshimeri serovar 6b str. SLCC5334   2 2
No Yes Listeria innocua Clip11262   1 1
No Yes Listeria seeligeri serovar 1/2b str. SLCC3954   3 3
No Yes Listeria monocytogenes serotype 4b str. CLIP 80459   3 3
No Yes Listeria ivanovii subsp. ivanovii PAM 55   2 2
No Yes Lysinibacillus sphaericus C3-41   1 1
No Yes Oceanobacillus iheyensis HTE831   1 1
No Yes Macrococcus caseolyticus JCSC5402   1 1
No Yes Staphylococcus pseudintermedius HKU10-03   7 2
No Yes Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305   1 1
No Yes Staphylococcus lugdunensis HKU09-01   2 1
No Yes Staphylococcus haemolyticus JCSC1435   2 1
No Yes Staphylococcus epidermidis RP62A   2 1
No Yes Staphylococcus aureus subsp. aureus JH1   10 3
No Yes Staphylococcus aureus   10 3
No Yes Gemmatimonas aurantiaca T-27   2 1
No Yes Melioribacter roseus P3M   2 1
No Yes Chlorobium tepidum TLS   1 1
No Yes Chloroherpeton thalassium ATCC 35110   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   22 5
No Yes Saprospira grandis str. Lewin   2 2
No Yes Niastella koreensis GR20-10   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Belliella baltica DSM 15883   2 2
No Yes Cyclobacterium marinum DSM 745   2 2
No Yes Marivirga tractuosa DSM 4126   2 2
No Yes Fibrella aestuarina   22 6
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   3 3
No Yes Cytophaga hutchinsonii ATCC 33406   2 2
No Yes Spirosoma linguale DSM 74   24 8
No Yes Runella slithyformis DSM 19594   23 7
No Yes Bacteroides sp. CF50   1 1
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Pedobacter saltans DSM 12145   1 1
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Fluviicola taffensis DSM 16823   1 1
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Zunongwangia profunda SM-A87   1 1
No Yes Croceibacter atlanticus HTCC2559   32 2
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Flavobacterium columnare ATCC 49512   1 1
No Yes Flavobacterium johnsoniae UW101   1 1
No Yes Fibrobacter succinogenes subsp. succinogenes S85   1 1
No Yes Isosphaera pallida ATCC 43644   32 6
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Rhodopirellula baltica SH 1   27 10
No Yes Pirellula staleyi DSM 6068   12 7
No Yes Coraliomargarita akajimensis DSM 45221   2 2
No Yes Opitutus terrae PB90-1   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Marinitoga piezophila KA3   1 1
No Yes Mesotoga prima MesG1.Ag.4.2   1 1
No Yes Thermovibrio ammonificans HB-1   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Dictyoglomus thermophilum H-6-12   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   4 4
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Candidatus Koribacter versatilis Ellin345   2 2
No Yes candidate division WWE3 bacterium RAAC2_WWE3_1   1 1
No Yes Nitratifractor salsuginis DSM 16511   23 5
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Sulfurovum sp. NBC37-1   1 1
No Yes Desulfurivibrio alkaliphilus AHT2   2 2
No Yes Desulfatibacillum alkenivorans AK-01   2 2
No Yes Desulfococcus oleovorans Hxd3   3 2
No Yes Desulfovibrio vulgaris subsp. vulgaris DP4   2 2
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter sp. M21   2 2
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Geobacter bemidjiensis Bem   2 2
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   9 2
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Sorangium cellulosum 'So ce 56'   4 2
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Cupriavidus metallidurans CH34   2 2
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Verminephrobacter eiseniae EF01-2   2 2
No Yes Ramlibacter tataouinensis TTB310   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   2 2
No Yes Polaromonas sp. JS666   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Janthinobacterium sp. Marseille   2 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Taylorella asinigenitalis MCE3   1 1
No Yes Taylorella equigenitalis MCE9   1 1
No Yes Nitrosomonas sp. Is79A3   1 1
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Methylotenera versatilis 301   1 1
No Yes Methylovorus sp. MP688   1 1
No Yes Methylovorus glucosetrophus SIP3-4   1 1
No Yes Methylobacillus flagellatus KT   4 2
No Yes Brevundimonas subvibrioides ATCC 15264   2 2
No Yes Caulobacter sp. K31   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Dinoroseobacter shibae DFL 12   7 2
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Methylobacterium extorquens AM1   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Mesorhizobium sp. BNC1   4 4
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Methylocystis sp. SC2   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   2 2
No Yes Tolumonas auensis DSM 9187   1 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Psychromonas ingrahamii 37   3 3
No Yes Ferrimonas balearica DSM 9799   1 1
No Yes Shewanella pealeana ATCC 700345   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Chromohalobacter salexigens DSM 3043   1 1
No Yes Halomonas elongata DSM 2581   1 1
No Yes Dichelobacter nodosus VCS1703A   1 1
No Yes Thiocystis violascens DSM 198   10 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas fulva 12-X   1 1
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Psychrobacter sp. G   1 1
No Yes Psychrobacter arcticus 273-4   1 1
No Yes Psychrobacter cryohalolentis K5   1 1
No Yes Methanocella arvoryzae MRE50   3 3
No Yes Methanosaeta harundinacea 6Ac   3 3
No Yes Methanosaeta thermophila PT   9 3
No Yes Methanosaeta concilii GP6   7 2
No Yes Methanohalobium evestigatum Z-7303   17 3
No Yes Methanococcoides burtonii DSM 6242   4 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Methanohalophilus mahii DSM 5219   2 2
No Yes Methanosphaerula palustris E1-9c   2 2
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Methanoculleus bourgensis MS2   7 3
No Yes Methanoculleus marisnigri JR1   3 2
No Yes Natrinema sp. J7-2   1 1
No Yes Methanococcus maripaludis C5   6 1
No Yes Aciduliprofundum sp. MAR08-339   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   20 6
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   2 1
No Yes Cyanothece sp. PCC 7822   6 4
No Yes Cyanothece sp. PCC 7424   4 2
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Stanieria cyanosphaera PCC 7437   9 2
No Yes Calothrix parietina Calothrix sp. PCC 6303   6 5
No Yes Cylindrospermum stagnale PCC 7417   5 1
No Yes Anabaena cylindrica PCC 7122   8 3
No Yes Adlercreutzia equolifaciens DSM 19450   3 1
No Yes Streptomyces rapamycinicus NRRL 5491   2 2
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Saccharothrix espanaensis DSM 44229   7 4
No Yes Amycolatopsis mediterranei RB   7 4
No Yes Amycolatopsis mediterranei S699   7 4
No Yes Amycolatopsis mediterranei S699   7 4
No Yes Amycolatopsis orientalis HCCB10007   3 2
No Yes Rhodococcus pyridinivorans SB3094   1 1
No Yes Corynebacterium halotolerans YIM 70093 = DSM 44683   1 1
No Yes Corynebacterium ulcerans BR-AD22   10 3
No Yes Corynebacterium ulcerans 809   8 2
No Yes Corynebacterium argentoratense DSM 44202   1 1
No Yes Corynebacterium callunae DSM 20147   1 1
No Yes Corynebacterium pseudotuberculosis P54B96   6 3
No Yes Corynebacterium pseudotuberculosis 267   6 3
No Yes Corynebacterium pseudotuberculosis 1/06-A   2 2
No Yes Corynebacterium pseudotuberculosis 42/02-A   3 2
No Yes Corynebacterium pseudotuberculosis 3/99-5   6 3
No Yes Corynebacterium pseudotuberculosis 31   3 1
No Yes Corynebacterium pseudotuberculosis PAT10   3 2
No Yes Corynebacterium pseudotuberculosis I19   3 2
No Yes Corynebacterium pseudotuberculosis FRC41   6 3
No Yes Corynebacterium pseudotuberculosis C231   6 3
No Yes Corynebacterium pseudotuberculosis 1002   6 3
No Yes Corynebacterium diphtheriae BH8   2 2
No Yes Corynebacterium diphtheriae VA01   4 4
No Yes Corynebacterium diphtheriae HC04   7 4
No Yes Corynebacterium diphtheriae HC03   7 4
No Yes Corynebacterium diphtheriae HC02   3 2
No Yes Corynebacterium diphtheriae HC01   4 3
No Yes Corynebacterium diphtheriae 241   4 3
No Yes Corynebacterium diphtheriae CDCE 8392   1 1
No Yes Corynebacterium diphtheriae PW8   1 1
No Yes Corynebacterium diphtheriae C7 (beta)   1 1
No Yes Corynebacterium diphtheriae 31A   1 1
No Yes Clavibacter michiganensis subsp. sepedonicus   2 2
No Yes Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   1 1
No Yes Gardnerella vaginalis HMP9231   1 1
No Yes Gardnerella vaginalis ATCC 14019   1 1
No Yes Bifidobacterium longum NCC2705   1 1
No Yes Bifidobacterium longum DJO10A   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium longum subsp. longum KACC 91563   1 1
No Yes Bifidobacterium animalis subsp. animalis ATCC 25527   1 1
No Yes Bifidobacterium animalis subsp. lactis ATCC 27673   1 1
No Yes Bifidobacterium asteroides PRL2011   1 1
No Yes Bifidobacterium bifidum PRL2010   1 1
No Yes Bifidobacterium bifidum BGN4   1 1
No Yes Actinomyces odontolyticus ATCC 17982   17 3
No Yes Chthonomonas calidirosea T49   2 2
No Yes Thermus oshimai JL-2   6 5
No Yes Thermus thermophilus HB8   3 3
No Yes [Eubacterium] cylindroides [Eubacterium] cylindroides T2-87   2 2
No Yes Ruminococcus champanellensis 18P13   2 2
No Yes Clostridium acidurici 9a   1 1
No Yes Desulfotomaculum gibsoniae DSM 7213   2 1
No Yes Clostridium difficile BI1   1 1
No Yes Clostridium difficile CD196   1 1
No Yes Coprococcus catus GD/7   2 2
No Yes Clostridium botulinum BKT015925   1 1
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum E3 str. Alaska E43   1 1
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Thermacetogenium phaeum DSM 12270   2 1
No Yes Halobacteroides halobius DSM 5150   1 1
No Yes Enterococcus casseliflavus EC20   1 1
No Yes Lactobacillus rhamnosus ATCC 8530   1 1
No Yes Streptococcus pneumoniae A026   1 1
No Yes Streptococcus pneumoniae ST556   1 1
No Yes Streptococcus pneumoniae TCH8431/19A   1 1
No Yes Streptococcus pneumoniae Taiwan19F-14   1 1
No Yes Streptococcus pneumoniae TIGR4   1 1
No Yes Exiguobacterium antarcticum B7   1 1
No Yes Paenibacillus sp. Y412MC10   1 1
No Yes Listeria monocytogenes EGD sequence   2 2
No Yes Listeria monocytogenes N53-1   1 1
No Yes Listeria monocytogenes La111   1 1
No Yes Listeria monocytogenes serotype 4b str. LL195   3 3
No Yes Listeria monocytogenes 07PF0776   3 3
No Yes Listeria monocytogenes M7   2 2
No Yes Listeria monocytogenes J1-220   2 2
No Yes Listeria monocytogenes J1816   2 2
No Yes Listeria monocytogenes SLCC2376   2 2
No Yes Listeria monocytogenes SLCC5850   2 2
No Yes Listeria monocytogenes ATCC 19117   3 3
No Yes Listeria monocytogenes L312   3 3
No Yes Listeria monocytogenes SLCC2479   3 3
No Yes Listeria monocytogenes SLCC7179   2 2
No Yes Listeria monocytogenes SLCC2540   4 4
No Yes Listeria monocytogenes SLCC2378   3 3
No Yes Listeria monocytogenes serotype 1/2b str. SLCC2755   4 4
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   3 3
No Yes Listeria monocytogenes serotype 7 str. SLCC2482   4 4
No Yes Listeria monocytogenes 08-5578   2 2
No Yes Listeria monocytogenes 08-5923   2 2
No Yes Listeria monocytogenes L99   2 2
No Yes Listeria monocytogenes HCC23   2 2
No Yes Listeria monocytogenes 10403S   2 2
No Yes Listeria monocytogenes J0161   2 2
No Yes Listeria monocytogenes Finland 1998   2 2
No Yes Listeria monocytogenes FSL R2-561   3 3
No Yes Listeria monocytogenes serotype 4b str. F2365   3 3
No Yes Listeria monocytogenes EGD-e   3 3
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Staphylococcus aureus subsp. aureus MSHR1132   10 3
No Yes Staphylococcus pseudintermedius ED99   5 2
No Yes Staphylococcus pasteuri SP1   1 1
No Yes Staphylococcus lugdunensis N920143   2 1
No Yes Staphylococcus warneri SG1   4 2
No Yes Staphylococcus epidermidis ATCC 12228   6 2
No Yes Staphylococcus aureus CA-347   10 3
No Yes Staphylococcus aureus Bmb9393   10 3
No Yes Staphylococcus aureus M1   10 3
No Yes Staphylococcus aureus 08BA02176   10 3
No Yes Staphylococcus aureus ST228/18412   9 3
No Yes Staphylococcus aureus ST228/18341   10 3
No Yes Staphylococcus aureus ST228/16125   10 3
No Yes Staphylococcus aureus ST228/16035   10 3
No Yes Staphylococcus aureus ST228/15532   10 3
No Yes Staphylococcus aureus ST228/10497   10 3
No Yes Staphylococcus aureus ST228/10388   10 3
No Yes Staphylococcus aureus 04-02981   10 3
No Yes Staphylococcus aureus RF122   3 1
No Yes Staphylococcus aureus subsp. aureus Z172   7 2
No Yes Staphylococcus aureus subsp. aureus 6850   3 1
No Yes Staphylococcus aureus subsp. aureus SA957   10 3
No Yes Staphylococcus aureus subsp. aureus CN1   10 3
No Yes Staphylococcus aureus subsp. aureus SA40   10 3
No Yes Staphylococcus aureus subsp. aureus 11819-97   10 3
No Yes Staphylococcus aureus subsp. aureus M013   10 3
No Yes Staphylococcus aureus subsp. aureus HO 5096 0412   10 3
No Yes Staphylococcus aureus subsp. aureus VC40   7 2
No Yes Staphylococcus aureus subsp. aureus T0131   10 3
No Yes Staphylococcus aureus subsp. aureus LGA251   8 2
No Yes Staphylococcus aureus subsp. aureus ECT-R 2   10 3
No Yes Staphylococcus aureus subsp. aureus JKD6159   10 3
No Yes Staphylococcus aureus subsp. aureus ED133   10 3
No Yes Staphylococcus aureus subsp. aureus ED98   10 3
No Yes Staphylococcus aureus subsp. aureus TW20   10 3
No Yes Staphylococcus aureus subsp. aureus 55/2053   10 3
No Yes Staphylococcus aureus subsp. aureus TCH60   11 3
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   8 2
No Yes Staphylococcus aureus subsp. aureus 71193   10 3
No Yes Staphylococcus aureus subsp. aureus S0385   7 2
No Yes Staphylococcus aureus subsp. aureus str. Newman   10 3
No Yes Staphylococcus aureus subsp. aureus Mu3   10 3
No Yes Staphylococcus aureus subsp. aureus USA300_TCH1516   10 3
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   10 3
No Yes Staphylococcus aureus subsp. aureus JH9   10 3
No Yes Staphylococcus aureus subsp. aureus MSSA476   10 3
No Yes Staphylococcus aureus subsp. aureus MRSA252   5 2
No Yes Staphylococcus aureus subsp. aureus MW2   10 3
No Yes Staphylococcus aureus subsp. aureus N315   10 3
No Yes Staphylococcus aureus subsp. aureus Mu50   10 3
No Yes Staphylococcus aureus subsp. aureus COL   10 3
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   7 2
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   3 1
No Yes Nonlabens dokdonensis DSW-6   20 1
No Yes Psychroflexus torquis ATCC 700755   11 1
No Yes Fibrobacter succinogenes subsp. succinogenes S85   1 1
No Yes Singulisphaera acidiphila DSM 18658   12 4
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. 'Miyazaki F'   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   1 1
No Yes Geobacter sp. M18   2 2
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum CMR15   2 2
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Taylorella asinigenitalis 14/45   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Taylorella equigenitalis ATCC 35865   1 1
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Haemophilus influenzae 10810   1 1
No Yes Shewanella sp. W3-18-1   1 1
No Yes Thalassolituus oleivorans MIL-1   1 1
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Acinetobacter junii SH205   2 2
No Yes Methanomethylovorans hollandica DSM 15978   3 2
No Yes Methanolobus psychrophilus R15   4 3
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   1 1
No Yes Natronococcus occultus SP4   1 1
No Yes Natronobacterium gregoryi SP2   1 1
No Yes Methanococcus maripaludis C6   4 2
No Yes Methanococcus maripaludis C7   6 2
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 1 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   3 3
No Yes 3_050719R (meta-genome)   10 8
No Yes 4_050719Q (meta-genome)   100 55
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   97 45
No Yes 7_Oxygen_minimum_layer (meta-genome)   3 3
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   26 14
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   6 4
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   8 2
No Yes Bath Hot Springs, planktonic community (meta-genome)   8 7
No Yes Combined (meta-genome)   19 19
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   101 85
No Yes Dump top (Dump top) (meta-genome)   80 61
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   9 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   9 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   5 5
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   24 22
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   4 4
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   6 5
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   9 8
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   8 5
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   11 6
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   8 7
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   10 7
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   10 7
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   6 4
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   11 10
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   11 6
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   7 3
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   37 27
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   33 18
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   11 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   54 24
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   45 21
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   47 27
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   18 11
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   12 9
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   19 19
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   19 18
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   11 5
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   117 86
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   44 32
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   35 26
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   32 23
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   5 4
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   13 12
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   16 16
No Yes Mouse Gut Community ob1 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   98984 41079
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   27 24
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   33 21
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   8 8
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   8 6
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   55 32
No Yes Sludge/US, Jazz Assembly (meta-genome)   10 4
No Yes Sludge/US, Phrap Assembly (meta-genome)   20 10
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   41 33
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   81 72
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   46 41
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   28 26
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   40 35
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   44 41
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   37 36
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   5 5
No Yes STRING v9.0.5 (STRING)   873 325
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   4 4
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   45 40
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   17 15
No Yes Uniprot 2018_03 genome   15685 8289
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   39 22
No Yes Global Ocean Sampling Expedition (GOS)   152 139
No Yes NCBI plasmid sequences (Plasmids)   50 38
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   19 19
No Yes TargetDB (Targets)   31 17

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