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GTF2I-like repeat superfamily domain assignments
in
Monodelphis domestica 69_5

Assignment details

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Monodelphis domestica 69_5 has 10 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMODP00000008707   1.03e-34   107-196   GTF2I-like repeat  
  3.66e-33   557-652   GTF2I-like repeat  
  4.71e-33   451-542   GTF2I-like repeat  
  1.7e-31   718-811   GTF2I-like repeat  
  4.58e-31   852-940   GTF2I-like repeat  
  3.4e-29   347-432   GTF2I-like repeat  
ENSMODP00000008726   1.09e-34   119-209   GTF2I-like repeat  
  3.14e-25   24-93   GTF2I-like repeat  
ENSMODP00000038882   2.88e-29   120-202   GTF2I-like repeat  
ENSMODP00000041150   1.29e-33   84-174   GTF2I-like repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   14975 14975
No Yes Homo sapiens 76_38 Human 54 14
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 14 4
No Yes Gorilla gorilla 76_3.1 Western gorilla 8 3
No Yes Pongo abelii 76_2 Sumatran orangutan 19 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 9 5
No Yes Papio anubis 76 Olive baboon 16 4
No Yes Macaca mulatta 76_1 Rhesus monkey 25 5
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 18 7
No Yes Otolemur garnettii 76_3 Small-eared galago 12 3
No Yes Microcebus murinus 76_1 Gray mouse lemur 9 3
No Yes Rattus norvegicus 76_5.0 Norway rat 24 5
No Yes Mus musculus 76_38 House mouse 120 25
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 4 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 9 2
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 13 3
No Yes Cavia porcellus 76_3 Domestic guinea pig 17 5
No Yes Oryctolagus cuniculus 76_2 Rabbit 18 4
No Yes Ochotona princeps 76 American pika 8 2
No Yes Tupaia belangeri 76 Northern tree shrew 6 2
No Yes Sus scrofa 76_10.2 Pig 25 5
No Yes Bos taurus 76_3.1 Cattle 13 3
No Yes Ovis aries 76_3.1 Sheep 30 7
No Yes Vicugna pacos 76_1 Alpaca 6 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 11 2
No Yes Mustela putorius furo 76_1.0 Domestic ferret 12 3
No Yes Ailuropoda melanoleuca 76_1 Giant panda 13 3
No Yes Canis familiaris 76_3.1 Dog 18 4
No Yes Felis catus 76_6.2 Domestic cat 12 3
No Yes Equus caballus 76_2 Horse 36 7
No Yes Myotis lucifugus 76_2.0 Little brown bat 13 3
No Yes Pteropus vampyrus 76_1 Large flying fox 12 3
No Yes Sorex araneus 76_1 European shrew 6 1
No Yes Erinaceus europaeus 76 Western European hedgehog 3 1
No Yes Loxodonta africana 76_3 African savanna elephant 18 4
No Yes Echinops telfairi 76 Small Madagascar hedgehog 2 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 25 6
No Yes Macropus eugenii 76_1.0 Tammar wallaby 10 2
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 4 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 10 4
No Yes Ornithorhynchus anatinus 76_5 Platypus 11 2
No Yes Meleagris gallopavo 76_2 Turkey 10 2
No Yes Gallus gallus 76_4 Chicken 11 2
No Yes Anas platyrhynchos 76_1.0 Mallard 11 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 11 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 11 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 22 4
No Yes Anolis carolinensis 76_2.0 Green anole 4 2
No Yes Xenopus laevis African clawed frog 32 6
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 15 4
No Yes Latimeria chalumnae 76_1 Coelacanth 11 2
No Yes Lepisosteus oculatus 76 Spotted gar 6 2
No Yes Gadus morhua 76_1 Atlantic cod 5 1
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 5 1
No Yes Takifugu rubripes 76_4 Torafugu 25 6
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 5 1
No Yes Oryzias latipes 76_1 Japanese medaka 5 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 5 1
No Yes Poecilia formosa 76 Amazon molly 5 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 5 1
No Yes Astyanax mexicanus 76 Mexican tetra 5 1
No Yes Danio rerio 76_9 Zebrafish 12 4
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Capitella sp. I   10 10
No Yes Amphimedon queenslandica   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Galerina marginata v1.0   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 17 5
No Yes Homo sapiens 75_37 (old version GRC) Human 89 25
No Yes Homo sapiens (NCBI version) Human 49 10
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 14 3
No Yes Homo sapiens 69_37 Human 26 6
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 14 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 8 3
No Yes Pongo abelii 69_2 Sumatran orangutan 14 4
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 7 3
No Yes Macaca mulatta 69_1 Rhesus monkey 13 3
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 10 4
No Yes Otolemur garnettii 69_3 Small-eared galago 12 3
No Yes Microcebus murinus 69_1 Gray mouse lemur 9 3
No Yes Rattus norvegicus 69_3.4 Norway rat 14 3
No Yes Mus musculus 69_38 House mouse 14 3
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 4 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 9 2
No Yes Cavia porcellus 69_3 Domestic guinea pig 16 4
No Yes Oryctolagus cuniculus 69_2 Rabbit 13 3
No Yes Ochotona princeps 69 American pika 8 2
No Yes Tupaia belangeri 69 Northern tree shrew 6 2
No Yes Sus scrofa 69_10.2 Pig 13 3
No Yes Bos taurus 69_3.1 Cattle 13 3
No Yes Vicugna pacos 69_1 Alpaca 6 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 11 2
No Yes Mustela putorius furo 69_1.0 Domestic ferret 12 3
No Yes Ailuropoda melanoleuca 69_1 Giant panda 13 3
No Yes Canis familiaris 69_3.1 Dog 13 3
No Yes Felis catus 69 Domestic cat 10 2
No Yes Equus caballus 69_2 Horse 13 3
No Yes Myotis lucifugus 69_2.0 Little brown bat 13 3
No Yes Pteropus vampyrus 69_1 Large flying fox 12 3
No Yes Sorex araneus 69_1 European shrew 6 1
No Yes Erinaceus europaeus 69 Western European hedgehog 3 1
No Yes Loxodonta africana 69_3 African savanna elephant 12 3
No Yes Echinops telfairi 69 Small Madagascar hedgehog 2 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 9 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 10 2
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 4 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 10 4
No Yes Ornithorhynchus anatinus 69_5 Platypus 11 2
No Yes Meleagris gallopavo 69_2 Turkey 10 2
No Yes Gallus gallus 69_2 Chicken 11 2
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 11 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 11 2
No Yes Anolis carolinensis 69_2.0 Green anole 3 2
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 10 2
No Yes Latimeria chalumnae 69_1 Coelacanth 11 2
No Yes Gadus morhua 69_1 Atlantic cod 5 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 5 1
No Yes Takifugu rubripes 69_4 Torafugu 5 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 5 1
No Yes Oryzias latipes 69_1 Japanese medaka 5 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 5 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 5 1
No Yes Danio rerio 69_9 Zebrafish 9 4
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes NCBI 2017_08 genome   9263 2016
No Yes STRING v9.0.5 (STRING)   260 65
No Yes Uniprot 2018_03 genome   2922 757
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   10 10
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   30 30
No Yes TargetDB (Targets)   34 18

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