SUPERFAMILY 1.75 HMM library and genome assignments server

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IpaD-like superfamily domain assignments
in
all bacterial and archaeal genomes

Assignment details

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25 selected genomes have 29 significant domains in 29 proteins.

Showing genomes 1 to 25 of 86
  1 2 3 4   Next Last

Chromobacterium violaceum ATCC 12472 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|34498072|ref|NP_902287.1|   5.1e-90   86-389   IpaD-like  

Burkholderia thailandensis E264 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|83716730|ref|YP_439041.1|   6.93e-91   11-276   IpaD-like  

Burkholderia pseudomallei 1106a has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|126457493|ref|YP_001076104.1|   1.03e-92   35-301   IpaD-like  

Xanthomonas albilineans GPE PC73 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|285018261|ref|YP_003375972.1|   1.7e-36   426-616   IpaD-like  

Providencia stuartii MRSN 2154 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386743319|ref|YP_006216498.1|   0.00000000000157   1-45   IpaD-like  
gi|386743320|ref|YP_006216499.1|   1.26e-34   52-179,209-270   IpaD-like  
 
Weak hits:
gi|386743726|ref|YP_006216905.1|   0.0628   56-150   IpaD-like  

Proteus mirabilis HI4320 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|197286510|ref|YP_002152382.1|   8.89e-17   73-191,229-338   IpaD-like  

Yersinia enterocolitica subsp. enterocolitica 8081 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|123443720|ref|YP_001007691.1|   3.53e-76   39-206,236-340   IpaD-like  

Sodalis glossinidius str. 'morsitans' has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|85057984|ref|YP_453686.1|   1.57e-87   86-377   IpaD-like  
gi|85060027|ref|YP_455729.1|   3.79e-45   104-266   IpaD-like  

Erwinia tasmaniensis Et1/99 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|188534030|ref|YP_001907827.1|   1.96e-80   100-354   IpaD-like  
gi|188534803|ref|YP_001908600.1|   1.22e-82   97-374   IpaD-like  

Erwinia sp. Ejp617 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|385788197|ref|YP_005819306.1|   5.1e-62   177-371   IpaD-like  

Erwinia pyrifoliae Ep1/96 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|259908631|ref|YP_002648987.1|   5.49e-62   176-371   IpaD-like  
 
Weak hits:
gi|259908421|ref|YP_002648777.1|   0.034   322-399   IpaD-like  

Erwinia amylovora ATCC 49946 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|292899285|ref|YP_003538654.1|   5.89e-66   101-371   IpaD-like  
gi|292900350|ref|YP_003539719.1|   4.58e-64   130-362   IpaD-like  

Shigella sonnei Ss046 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|74314925|ref|YP_313343.1|   1.83e-112   41-322   IpaD-like  

Shigella dysenteriae Sd197 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|82524570|ref|YP_406165.1|   9.42e-108   41-322   IpaD-like  

Shigella boydii CDC 3083-94 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|187734361|ref|YP_001883187.1|   2.49e-108   41-322   IpaD-like  

Salmonella bongori NCTC 12419 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|340000439|ref|YP_004731323.1|   5.62e-88   49-329   IpaD-like  

Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|224584661|ref|YP_002638459.1|   2.22e-86   49-332   IpaD-like  
 
Weak hits:
gi|224584469|ref|YP_002638267.1|   0.034   102-186   IpaD-like  

Pseudomonas sp. UW4 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|426410519|ref|YP_007030618.1|   1.24e-52   151-352   IpaD-like  

Clostridium saccharoperbutylacetonicum N1-4(HMT) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|451817418|ref|YP_007453619.1|   0.0000122   160-367   IpaD-like  

Pandoraea pnomenusa 3kgm has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|560145395|ref|YP_008838745.1|   1.03e-53   168-386   IpaD-like  

Burkholderia thailandensis MSMB121 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|488605533|ref|YP_007920469.1|   3.53e-90   35-302   IpaD-like  

Burkholderia pseudomallei MSHR305 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|526458878|ref|YP_008328615.1|   4.19e-92   35-301   IpaD-like  

Burkholderia pseudomallei NCTC 13179 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|556572135|ref|YP_008740592.1|   1.03e-92   35-301   IpaD-like  

Burkholderia pseudomallei BPC006 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|403523333|ref|YP_006658902.1|   1.03e-92   35-301   IpaD-like  

Burkholderia pseudomallei 1026b has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386865311|ref|YP_006278259.1|   1.03e-92   35-301   IpaD-like  

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Showing genomes 1 to 25 of 86

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Select to display   Genome       Domains   Proteins
No Yes ALL   10590 10590
No Yes Drosophila suzukii   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Xanthomonas albilineans GPE PC73   1 1
No Yes Providencia stuartii MRSN 2154   2 2
No Yes Proteus mirabilis HI4320   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Sodalis glossinidius str. 'morsitans'   2 2
No Yes Erwinia tasmaniensis Et1/99   2 2
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   2 2
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Salmonella bongori NCTC 12419   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Proteus mirabilis BB2000   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   2 2
No Yes Shigella sonnei 53G   1 1
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   9681 9665
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   36 36
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   559 549
No Yes Global Ocean Sampling Expedition (GOS)   9 9
No Yes NCBI plasmid sequences (Plasmids)   6 6
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   42 42
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   90 90
No Yes TargetDB (Targets)   6 6
No Yes The Salmonella enterica Pan-genome (meta-genome)   20 20

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