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IpaD-like superfamily domain assignments
in
all genomes

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25 selected genomes have 26 significant domains in 26 proteins.

Showing genomes 26 to 50 of 105
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Burkholderia pseudomallei 1026b has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386865311|ref|YP_006278259.1|   1.03e-92   35-301   IpaD-like  

Burkholderia pseudomallei 668 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|126442887|ref|YP_001063153.1|   1.03e-92   35-301   IpaD-like  

Burkholderia pseudomallei 1710b has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|76817926|ref|YP_335727.1|   6.67e-93   1-267   IpaD-like  

Burkholderia pseudomallei K96243 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|53722550|ref|YP_111535.1|   1.03e-92   35-301   IpaD-like  

Burkholderia mallei NCTC 10229 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|124381675|ref|YP_001025872.1|   1.03e-92   35-301   IpaD-like  

Burkholderia mallei NCTC 10247 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|126446918|ref|YP_001077957.1|   1.03e-92   35-301   IpaD-like  

Burkholderia mallei ATCC 23344 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|53716477|ref|YP_106118.1|   7.59e-93   10-276   IpaD-like  

Proteus mirabilis BB2000 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|529238337|ref|YP_008399196.1|   2.49e-16   71-204,232-338   IpaD-like  

Morganella morganii subsp. morganii KT has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|455737176|ref|YP_007503442.1|   0.00000301   437-485   IpaD-like  
  0.0562   185-301   IpaD-like  

Erwinia pyrifoliae DSM 12163 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|387871516|ref|YP_005802890.1|   5.49e-62   176-371   IpaD-like  
 
Weak hits:
gi|387871278|ref|YP_005802651.1|   0.034   322-399   IpaD-like  

Erwinia amylovora CFBP1430 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|292487278|ref|YP_003530150.1|   4.58e-64   130-362   IpaD-like  
gi|292488074|ref|YP_003530951.1|   5.89e-66   101-371   IpaD-like  

Shigella sonnei 53G has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|383181836|ref|YP_005454431.1|   1.83e-112   41-322   IpaD-like  

Shigella flexneri 2002017 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|384546106|ref|YP_005712018.1|   3.14e-114   41-322   IpaD-like  

Shigella dysenteriae 1617 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|560133473|ref|YP_008832517.1|   4.97e-63   41-242   IpaD-like  

Salmonella bongori N268-08 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|526228858|ref|YP_008323501.1|   2.22e-88   49-329   IpaD-like  

Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|526221302|ref|YP_008267089.1|   3.01e-86   49-332   IpaD-like  

Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|452123290|ref|YP_007473538.1|   2.22e-89   49-329   IpaD-like  

Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|194735353|ref|YP_002115836.1|   1.44e-89   49-329   IpaD-like  

Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|525858671|ref|YP_008262014.1|   3.27e-85   49-332   IpaD-like  
 
Weak hits:
gi|525858026|ref|YP_008261225.1|   0.0759   347-466   IpaD-like  

Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|207858145|ref|YP_002244796.1|   2.22e-86   49-332   IpaD-like  
 
Weak hits:
gi|207856527|ref|YP_002243178.1|   0.0759   347-466   IpaD-like  

Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|62181385|ref|YP_217802.1|   2.22e-86   49-332   IpaD-like  
 
Weak hits:
gi|62179553|ref|YP_215970.1|   0.0392   115-199   IpaD-like  

Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|528820687|ref|YP_008361890.1|   2.22e-86   49-332   IpaD-like  

Salmonella enterica subsp. enterica serovar Newport str. SL254 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|513538120|ref|YP_008083642.1|   2.22e-86   49-332   IpaD-like  

Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|525837206|ref|YP_008253940.1|   3.01e-86   49-332   IpaD-like  

Salmonella enterica subsp. enterica serovar Typhimurium str. U288 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|482905445|ref|YP_007904005.1|   3.01e-86   49-332   IpaD-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   10590 10590
No Yes Drosophila suzukii   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Xanthomonas albilineans GPE PC73   1 1
No Yes Providencia stuartii MRSN 2154   2 2
No Yes Proteus mirabilis HI4320   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Sodalis glossinidius str. 'morsitans'   2 2
No Yes Erwinia tasmaniensis Et1/99   2 2
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   2 2
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Salmonella bongori NCTC 12419   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Proteus mirabilis BB2000   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   2 2
No Yes Shigella sonnei 53G   1 1
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   9681 9665
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   36 36
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   559 549
No Yes Global Ocean Sampling Expedition (GOS)   9 9
No Yes NCBI plasmid sequences (Plasmids)   6 6
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   42 42
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   90 90
No Yes TargetDB (Targets)   6 6
No Yes The Salmonella enterica Pan-genome (meta-genome)   20 20

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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