SUPERFAMILY 1.75 HMM library and genome assignments server

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Rhabdovirus nucleoprotein-like superfamily domain assignments
in
Brachypodium distachyon

Network of domain occurrence in all genomes



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Select to display   Genome       Domains   Proteins
No Yes ALL   18874 18874
No Yes Octopus bimaculoides 280   2 2
No Yes Drosophila sechellia 1.3   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 28 28
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Tetranychus urticae Two-spotted spider mite 6 6
No Yes Ixodes scapularis (Preliminary) Black-legged tick 5 5
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 3 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 2
No Yes NCBI 2017_08 genome   141 141
No Yes STRING v9.0.5 (STRING)   34 34
No Yes Uniprot 2018_03 genome   12164 12162
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   28 28
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   112 112
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   298 298
No Yes TargetDB (Targets)   1 1
No Yes UniProt viral sequences (Viral)   6003 6003

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]