SUPERFAMILY 1.75 HMM library and genome assignments server

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Fic-like family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
2f6sA   3.22e-39   0.0000000139   24-197   2f6s A:1-177  
2g03A   5.12e-40   0.0000000168   21-189   2g03 A:11-187  

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Select to display   Genome       Domains   Proteins
No Yes ALL   5505 5505
No Yes Mycoplasma leachii 99/014/6   1 1
No Yes Mycoplasma mycoides subsp. capri LC str. 95010   1 1
No Yes Mycoplasma capricolum subsp. capricolum ATCC 27343   1 1
No Yes Mycoplasma bovis HB0801   1 1
No Yes Mycoplasma fermentans M64   1 1
No Yes Finegoldia magna ATCC 29328   1 1
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   1 1
No Yes Ruminococcus bromii   1 1
No Yes Ruminococcus albus 7   1 1
No Yes butyrate-producing bacterium SS3/4   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Roseburia intestinalis   1 1
No Yes Streptococcus pseudopneumoniae IS7493   1 1
No Yes Streptococcus macedonicus ACA-DC 198   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Pelodictyon phaeoclathratiforme BU-1   1 1
No Yes Prevotella intermedia 17   1 1
No Yes Prevotella denticola F0289   1 1
No Yes Porphyromonas asaccharolytica DSM 20707   1 1
No Yes Alistipes finegoldii DSM 17242   1 1
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Leptotrichia buccalis C-1013-b   1 1
No Yes Campylobacter lari RM2100   1 1
No Yes Helicobacter cetorum MIT 00-7128   1 1
No Yes Helicobacter mustelae 12198   1 1
No Yes Helicobacter acinonychis str. Sheeba   1 1
No Yes Helicobacter pylori B38   1 1
No Yes Desulfovibrio alaskensis G20   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Neisseria meningitidis FAM18   1 1
No Yes Taylorella asinigenitalis MCE3   1 1
No Yes Aggregatibacter actinomycetemcomitans D7S-1   1 1
No Yes Haemophilus influenzae PittEE   1 1
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   1 1
No Yes Mycoplasma leachii PG50   1 1
No Yes Mycoplasma mycoides subsp. mycoides SC str. Gladysdale   1 1
No Yes Mycoplasma mycoides subsp. mycoides SC str. PG1   1 1
No Yes Mycoplasma bovis Hubei-1   1 1
No Yes Mycoplasma bovis PG45   1 1
No Yes Mycoplasma fermentans JER   1 1
No Yes Mycoplasma fermentans PG18   1 1
No Yes Ruminococcus champanellensis 18P13   1 1
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Enterococcus mundtii QU 25   3 3
No Yes Enterococcus faecium Aus0085   1 1
No Yes Enterococcus faecium DO   1 1
No Yes Lactococcus lactis subsp. lactis CV56   1 1
No Yes Lactococcus lactis subsp. cremoris UC509.9   1 1
No Yes Streptococcus constellatus subsp. pharyngis C1050   1 1
No Yes Streptococcus constellatus subsp. pharyngis C818   1 1
No Yes Streptococcus constellatus subsp. pharyngis C232   1 1
No Yes Streptococcus intermedius B196   1 1
No Yes Streptococcus anginosus C238   1 1
No Yes Streptococcus mutans UA159   1 1
No Yes Streptococcus suis T15   1 1
No Yes Streptococcus suis SC070731   1 1
No Yes Streptococcus suis S735   1 1
No Yes Streptococcus suis ST3   1 1
No Yes Streptococcus suis D9   1 1
No Yes Streptococcus suis SS12   1 1
No Yes Streptococcus suis ST1   1 1
No Yes Streptococcus suis A7   1 1
No Yes Streptococcus suis JS14   1 1
No Yes Streptococcus suis GZ1   1 1
No Yes Streptococcus suis 98HAH33   1 1
No Yes Streptococcus suis 05ZYH33   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Prevotella dentalis DSM 3688   1 1
No Yes Porphyromonas gingivalis TDC60   1 1
No Yes Helicobacter pylori BM012S   1 1
No Yes Helicobacter pylori BM012A   1 1
No Yes Helicobacter pylori SouthAfrica20   1 1
No Yes Helicobacter pylori UM298   1 1
No Yes Helicobacter pylori UM066   1 1
No Yes Helicobacter pylori UM037   1 1
No Yes Helicobacter pylori UM299   1 1
No Yes Helicobacter pylori UM032   1 1
No Yes Helicobacter pylori OK310   1 1
No Yes Helicobacter pylori OK113   1 1
No Yes Helicobacter pylori Rif2   1 1
No Yes Helicobacter pylori Rif1   1 1
No Yes Helicobacter pylori PeCan18   1 1
No Yes Helicobacter pylori Shi169   1 1
No Yes Helicobacter pylori Shi112   1 1
No Yes Helicobacter pylori Shi417   1 1
No Yes Helicobacter pylori XZ274   1 1
No Yes Helicobacter pylori Aklavik86   1 1
No Yes Helicobacter pylori SNT49   1 1
No Yes Helicobacter pylori Puno135   1 1
No Yes Helicobacter pylori Puno120   1 1
No Yes Helicobacter pylori ELS37   1 1
No Yes Helicobacter pylori SouthAfrica7   1 1
No Yes Helicobacter pylori India7   1 1
No Yes Helicobacter pylori Lithuania75   1 1
No Yes Helicobacter pylori 2017   2 2
No Yes Helicobacter pylori 2018   2 2
No Yes Helicobacter pylori 908   2 2
No Yes Helicobacter pylori F57   1 1
No Yes Helicobacter pylori F30   1 1
No Yes Helicobacter pylori F16   1 1
No Yes Helicobacter pylori Cuz20   1 1
No Yes Helicobacter pylori PeCan4   1 1
No Yes Helicobacter pylori SJM180   1 1
No Yes Helicobacter pylori B8   2 2
No Yes Helicobacter pylori 52   1 1
No Yes Helicobacter pylori v225d   1 1
No Yes Helicobacter pylori 83   1 1
No Yes Helicobacter pylori 35A   1 1
No Yes Helicobacter pylori P12   1 1
No Yes Helicobacter pylori G27   1 1
No Yes Helicobacter pylori Shi470   1 1
No Yes Helicobacter pylori HPAG1   1 1
No Yes Helicobacter pylori 51   1 1
No Yes Helicobacter pylori F32   1 1
No Yes Helicobacter pylori J99   1 1
No Yes Helicobacter pylori 26695   1 1
No Yes Helicobacter pylori 26695   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis G2136   1 1
No Yes Neisseria meningitidis M04-240196   1 1
No Yes Neisseria meningitidis M01-240149   1 1
No Yes Neisseria meningitidis NZ-05/33   1 1
No Yes Neisseria meningitidis M01-240355   1 1
No Yes Neisseria meningitidis 8013   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   1 1
No Yes Neisseria meningitidis MC58   1 1
No Yes Taylorella asinigenitalis 14/45   1 1
No Yes Nitrosomonas sp. AL212   1 1
No Yes Aggregatibacter actinomycetemcomitans ANH9381   1 1
No Yes Aggregatibacter actinomycetemcomitans D11S-1   1 1
No Yes Haemophilus somnus 2336   1 1
No Yes Haemophilus influenzae KR494   1 1
No Yes Haemophilus influenzae 10810   1 1
No Yes Haemophilus influenzae R2866   1 1
No Yes Haemophilus influenzae R2846   1 1
No Yes Haemophilus influenzae Rd KW20   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   2 2
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   2 2
No Yes Mouse Gut Community lean3 (meta-genome)   1 1
No Yes Mouse Gut Community ob1 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   3720 3720
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   30 30
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Termite Protist Endosymbiont Community (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   1386 1386
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   19 19
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   35 35
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   83 83
No Yes TargetDB (Targets)   9 9

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