SUPERFAMILY 1.75 HMM library and genome assignments server

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SPRY domain family domain assignments
in
PDB chains (SCOP 1.75)

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PDB chains (SCOP 1.75) (PDB) has 5 significant domains in 5 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
2afjA   5.56e-54   0.00000000245   11-213   2afj A:12-224  
2fbeA   2.96e-68   0.00000116   8-168   2fbe A:1-188  
2fnjA   1.85e-68   0.00000000137   9-223   2fnj A:35-251  
2ihsA   5.56e-65   0.00000000356   11-208   2fnj A:35-251  
2iwgB   5.56e-104   0.00000188   3-179   2iwg B:4-182  

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Select to display   Genome       Domains   Proteins
No Yes ALL   28403 28403
No Yes Homo sapiens 76_38 Human 161 161
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 47 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 61 61
No Yes Pongo abelii 76_2 Sumatran orangutan 39 39
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 39 39
No Yes Papio anubis 76 Olive baboon 43 43
No Yes Macaca mulatta 76_1 Rhesus monkey 82 82
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 79 79
No Yes Otolemur garnettii 76_3 Small-eared galago 42 42
No Yes Microcebus murinus 76_1 Gray mouse lemur 27 27
No Yes Rattus norvegicus 76_5.0 Norway rat 33 33
No Yes Mus musculus 76_38 House mouse 57 57
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 12 12
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 35 35
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 27 27
No Yes Cavia porcellus 76_3 Domestic guinea pig 26 26
No Yes Oryctolagus cuniculus 76_2 Rabbit 36 36
No Yes Ochotona princeps 76 American pika 21 21
No Yes Tupaia belangeri 76 Northern tree shrew 17 17
No Yes Sus scrofa 76_10.2 Pig 42 42
No Yes Bos taurus 76_3.1 Cattle 30 30
No Yes Ovis aries 76_3.1 Sheep 36 36
No Yes Vicugna pacos 76_1 Alpaca 15 15
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 24 24
No Yes Mustela putorius furo 76_1.0 Domestic ferret 31 31
No Yes Ailuropoda melanoleuca 76_1 Giant panda 37 37
No Yes Canis familiaris 76_3.1 Dog 34 34
No Yes Felis catus 76_6.2 Domestic cat 38 38
No Yes Equus caballus 76_2 Horse 36 36
No Yes Myotis lucifugus 76_2.0 Little brown bat 45 45
No Yes Pteropus vampyrus 76_1 Large flying fox 31 31
No Yes Sorex araneus 76_1 European shrew 23 23
No Yes Erinaceus europaeus 76 Western European hedgehog 20 20
No Yes Procavia capensis 76_1 Cape rock hyrax 26 26
No Yes Loxodonta africana 76_3 African savanna elephant 67 67
No Yes Echinops telfairi 76 Small Madagascar hedgehog 15 15
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 64 64
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 21 21
No Yes Macropus eugenii 76_1.0 Tammar wallaby 15 15
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 45 45
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 62 62
No Yes Ornithorhynchus anatinus 76_5 Platypus 53 53
No Yes Saccoglossus kowalevskii v3.0   3 3
No Yes Petromyzon marinus 76_7.0 Sea lamprey 2 2
No Yes Meleagris gallopavo 76_2 Turkey 20 20
No Yes Gallus gallus 76_4 Chicken 21 21
No Yes Anas platyrhynchos 76_1.0 Mallard 21 21
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 9 9
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 9 9
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 85 85
No Yes Anolis carolinensis 76_2.0 Green anole 50 50
No Yes Xenopus laevis African clawed frog 29 29
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 15 15
No Yes Latimeria chalumnae 76_1 Coelacanth 81 81
No Yes Lepisosteus oculatus 76 Spotted gar 73 73
No Yes Gadus morhua 76_1 Atlantic cod 57 57
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 27 27
No Yes Takifugu rubripes 76_4 Torafugu 121 121
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 114 114
No Yes Oryzias latipes 76_1 Japanese medaka 35 35
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 35 35
No Yes Poecilia formosa 76 Amazon molly 50 50
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 91 91
No Yes Astyanax mexicanus 76 Mexican tetra 46 46
No Yes Danio rerio 76_9 Zebrafish 68 68
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2 2
No Yes Adineta vaga   5 5
No Yes Octopus bimaculoides 280   2 2
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Lottia gigantea Owl limpet 1 1
No Yes Helobdella robusta   3 3
No Yes Capitella sp. I   2 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 2 2
No Yes Bombyx mori Domestic silkworm 2 2
No Yes Nasonia vitripennis Jewel wasp 2 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 2 2
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 2 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   2 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 2 2
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   2 2
No Yes Drosophila willistoni 1.3   2 2
No Yes Drosophila pseudoobscura 2.13   2 2
No Yes Drosophila persimilis 1.3   2 2
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   2 2
No Yes Drosophila simulans 1.3   2 2
No Yes Drosophila sechellia 1.3   2 2
No Yes Drosophila melanogaster 76_5 Fruit fly 9 9
No Yes Drosophila erecta 1.3   2 2
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   2 2
No Yes Drosophila mojavensis 1.3   2 2
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 3 3
No Yes Culex pipiens quinquefasciatus Southern house mosquito 2 2
No Yes Anopheles darlingi 22 American malaria mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 2 2
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 2
No Yes Acyrthosiphon pisum Pea aphid 4 4
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 2 2
No Yes Strigamia maritima 22   2 2
No Yes Sarcoptes scabiei   3 3
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 2 2
No Yes Pristionchus pacificus   1 1
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   2 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 2 2
No Yes Caenorhabditis japonica   2 2
No Yes Caenorhabditis brenneri   5 5
No Yes Caenorhabditis remanei   3 3
No Yes Caenorhabditis elegans 76_235 Roundworm 10 10
No Yes Caenorhabditis briggsae 2   3 3
No Yes Trichinella spiralis 22   2 2
No Yes Acropora digitifera v1.0   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 28 28
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 8 8
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 3 3
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 3 3
No Yes Homo sapiens 75_37 (old version GRC) Human 180 180
No Yes Homo sapiens (NCBI version) Human 72 72
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 35 35
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 2
No Yes Homo sapiens 69_37 Human 69 69
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 42 42
No Yes Gorilla gorilla 69_3.1 Western gorilla 42 42
No Yes Pongo abelii 69_2 Sumatran orangutan 39 39
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 36 36
No Yes Macaca mulatta 69_1 Rhesus monkey 42 42
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 44 44
No Yes Otolemur garnettii 69_3 Small-eared galago 42 42
No Yes Microcebus murinus 69_1 Gray mouse lemur 27 27
No Yes Rattus norvegicus 69_3.4 Norway rat 25 25
No Yes Mus musculus 69_38 House mouse 36 36
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 12 12
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 35 35
No Yes Cavia porcellus 69_3 Domestic guinea pig 24 24
No Yes Oryctolagus cuniculus 69_2 Rabbit 38 38
No Yes Ochotona princeps 69 American pika 21 21
No Yes Tupaia belangeri 69 Northern tree shrew 17 17
No Yes Sus scrofa 69_10.2 Pig 35 35
No Yes Bos taurus 69_3.1 Cattle 27 27
No Yes Vicugna pacos 69_1 Alpaca 15 15
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 24 24
No Yes Mustela putorius furo 69_1.0 Domestic ferret 31 31
No Yes Ailuropoda melanoleuca 69_1 Giant panda 36 36
No Yes Canis familiaris 69_3.1 Dog 29 29
No Yes Felis catus 69 Domestic cat 15 15
No Yes Equus caballus 69_2 Horse 32 32
No Yes Myotis lucifugus 69_2.0 Little brown bat 43 43
No Yes Pteropus vampyrus 69_1 Large flying fox 31 31
No Yes Sorex araneus 69_1 European shrew 23 23
No Yes Erinaceus europaeus 69 Western European hedgehog 20 20
No Yes Procavia capensis 69_1 Cape rock hyrax 26 26
No Yes Loxodonta africana 69_3 African savanna elephant 56 56
No Yes Echinops telfairi 69 Small Madagascar hedgehog 15 15
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 23 23
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 21 21
No Yes Macropus eugenii 69_1.0 Tammar wallaby 15 15
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 43 43
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 60 60
No Yes Ornithorhynchus anatinus 69_5 Platypus 47 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 2 2
No Yes Meleagris gallopavo 69_2 Turkey 13 13
No Yes Gallus gallus 69_2 Chicken 15 15
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 9 9
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 78 78
No Yes Anolis carolinensis 69_2.0 Green anole 45 45
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 14 14
No Yes Latimeria chalumnae 69_1 Coelacanth 73 73
No Yes Gadus morhua 69_1 Atlantic cod 55 55
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 25 25
No Yes Takifugu rubripes 69_4 Torafugu 25 25
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 85 85
No Yes Oryzias latipes 69_1 Japanese medaka 27 27
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 35 35
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 75 75
No Yes Danio rerio 69_9 Zebrafish 48 48
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Caenorhabditis elegans 69_215 Roundworm 3 3
No Yes NCBI 2017_08 genome   13571 13504
No Yes STRING v9.0.5 (STRING)   882 882
No Yes Uniprot 2018_03 genome   6427 6406
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   20 20
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   59 59
No Yes TargetDB (Targets)   53 53

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