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Hcp1-like superfamily domain assignments
in
Candidatus Nitrospira defluvii

Assignment details

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Candidatus Nitrospira defluvii has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|302037306|ref|YP_003797628.1|   1.28e-31   8-148   Hcp1-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   120011 120011
No Yes Dictyostelium discoideum   2 2
No Yes Medicago truncatula Barrel medic 1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes Gemmatimonas aurantiaca T-27   1 1
No Yes Chlorobium phaeobacteroides DSM 266   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Waddlia chondrophila WSU 86-1044   1 1
No Yes Planctomyces brasiliensis DSM 5305   6 6
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   2 2
No Yes Granulicella tundricola MP5ACTX9   4 4
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Leptospirillum ferrooxidans C2-3   1 1
No Yes Arcobacter sp. L   1 1
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Campylobacter concisus 13826   1 1
No Yes Helicobacter hepaticus ATCC 51449   1 1
No Yes Helicobacter cinaedi PAGU611   1 1
No Yes Desulfovibrio salexigens DSM 2638   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Geobacter sp. M21   1 1
No Yes Geobacter bemidjiensis Bem   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Pelobacter carbinolicus DSM 2380   1 1
No Yes Sorangium cellulosum 'So ce 56'   3 3
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Azoarcus sp. BH72   3 3
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Rubrivivax gelatinosus IL144   2 2
No Yes Leptothrix cholodnii SP-6   2 2
No Yes Burkholderia phytofirmans PsJN   3 3
No Yes Burkholderia phymatum STM815   4 4
No Yes Burkholderia xenovorans LB400   4 4
No Yes Ralstonia eutropha JMP134   2 2
No Yes Cupriavidus taiwanensis LMG 19424   2 2
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Ralstonia eutropha H16   2 2
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Burkholderia sp. RPE64   4 4
No Yes Burkholderia sp. CCGE1002   3 3
No Yes Burkholderia thailandensis E264   5 5
No Yes Burkholderia pseudomallei 1106a   6 6
No Yes Burkholderia mallei SAVP1   4 4
No Yes Burkholderia ambifaria AMMD   2 2
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   2 2
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia gladioli BSR3   3 3
No Yes Burkholderia glumae BGR1   4 4
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Variovorax paradoxus S110   3 3
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Collimonas fungivorans Ter331   3 3
No Yes Herbaspirillum seropedicae SmR1   2 2
No Yes Pusillimonas sp. T7-7   2 2
No Yes Advenella kashmirensis WT001   1 1
No Yes Taylorella asinigenitalis MCE3   1 1
No Yes Taylorella equigenitalis MCE9   1 1
No Yes Bordetella petrii DSM 12804   2 2
No Yes Bordetella avium 197N   1 1
No Yes Bordetella parapertussis 12822   1 1
No Yes Bordetella bronchiseptica RB50   1 1
No Yes Achromobacter xylosoxidans A8   2 2
No Yes Achromobacter xylosoxidans   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Pseudovibrio sp. FO-BEG1   3 3
No Yes Jannaschia sp. CCS1   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   4 4
No Yes Azospirillum brasilense Sp245   2 2
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Azorhizobium caulinodans ORS 571   3 3
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Rhizobium etli CIAT 652   2 2
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   1 1
No Yes Methylocella silvestris BL2   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   1 1
No Yes Aggregatibacter aphrophilus NJ8700   1 1
No Yes Tolumonas auensis DSM 9187   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   2 2
No Yes Aliivibrio salmonicida LFI1238   4 4
No Yes Vibrio fischeri MJ11   3 3
No Yes Vibrio sp. Ex25   2 2
No Yes Vibrio harveyi ATCC BAA-1116   1 1
No Yes Vibrio parahaemolyticus RIMD 2210633   2 2
No Yes Vibrio splendidus LGP32   3 3
No Yes Vibrio anguillarum 775   3 3
No Yes Vibrio furnissii NCTC 11218   3 3
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Vibrio cholerae O395   2 2
No Yes Photobacterium profundum SS9   1 1
No Yes Psychromonas ingrahamii 37   2 2
No Yes Psychromonas sp. CNPT3   1 1
No Yes Shewanella loihica PV-4   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Marinobacter sp. BSs20148   2 2
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Hahella chejuensis KCTC 2396   2 2
No Yes Marinomonas posidonica IVIA-Po-181   3 3
No Yes Marinomonas sp. MWYL1   3 3
No Yes Marinomonas mediterranea MMB-1   2 2
No Yes Chromohalobacter salexigens DSM 3043   1 1
No Yes Halomonas elongata DSM 2581   2 2
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Methylomonas methanica MC09   1 1
No Yes Frateuria aurantia DSM 6220   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   2 2
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Halorhodospira halophila SL1   1 1
No Yes Thiocystis violascens DSM 198   1 1
No Yes gamma proteobacterium HdN1   2 2
No Yes Photorhabdus asymbiotica   15 15
No Yes Photorhabdus luminescens subsp. laumondii TTO1   11 11
No Yes Xenorhabdus bovienii SS-2004   8 8
No Yes Xenorhabdus nematophila ATCC 19061   7 7
No Yes Providencia stuartii MRSN 2154   6 6
No Yes Proteus mirabilis HI4320   7 7
No Yes Edwardsiella ictaluri 93-146   2 2
No Yes Edwardsiella tarda EIB202   1 1
No Yes Rahnella sp. Y9602   10 10
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   13 13
No Yes Yersinia pseudotuberculosis IP 31758   9 9
No Yes Yersinia pestis Pestoides F   8 8
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Serratia proteamaculans 568   3 3
No Yes Dickeya zeae Ech1591   11 11
No Yes Pectobacterium wasabiae WPP163   10 10
No Yes Pectobacterium sp. SCC3193   13 13
No Yes Pectobacterium atrosepticum SCRI1043   7 7
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   7 7
No Yes Sodalis glossinidius str. 'morsitans'   1 1
No Yes Pantoea sp. At-9b   4 4
No Yes Pantoea vagans C9-1   1 1
No Yes Pantoea ananatis LMG 20103   4 4
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia billingiae Eb661   7 7
No Yes Erwinia pyrifoliae Ep1/96   4 4
No Yes Erwinia amylovora ATCC 49946   2 2
No Yes Escherichia blattae DSM 4481   4 4
No Yes Cronobacter turicensis z3032   5 5
No Yes Cronobacter sakazakii ES15   4 4
No Yes Enterobacteriaceae bacterium strain FGI 57   5 5
No Yes Shigella sonnei Ss046   2 2
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Salmonella bongori NCTC 12419   5 5
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   3 3
No Yes Klebsiella oxytoca E718   5 5
No Yes Klebsiella variicola At-22   5 5
No Yes Klebsiella pneumoniae NTUH-K2044   2 2
No Yes Enterobacter aerogenes KCTC 2190   3 3
No Yes Escherichia fergusonii ATCC 35469   2 2
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter sp. R4-368   2 2
No Yes Enterobacter sp. 638   2 2
No Yes Enterobacter asburiae LF7a   6 6
No Yes Enterobacter cloacae subsp. dissolvens SDM   10 10
No Yes Citrobacter rodentium ICC168   6 6
No Yes Citrobacter koseri ATCC BAA-895   6 6
No Yes Azotobacter vinelandii DJ   2 2
No Yes Pseudomonas sp. TKP   3 3
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   3 3
No Yes Pseudomonas entomophila L48   8 8
No Yes Pseudomonas syringae pv. tomato str. DC3000   3 3
No Yes Pseudomonas fulva 12-X   1 1
No Yes Pseudomonas putida F1   2 2
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   3 3
No Yes Pseudomonas mendocina ymp   2 2
No Yes Pseudomonas aeruginosa UCBPP-PA14   6 6
No Yes Pseudomonas sp. VLB120   4 4
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Acinetobacter sp. ADP1   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 3 3
No Yes Singulisphaera acidiphila DSM 18658   3 3
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   2 2
No Yes Geobacter sp. M18   1 1
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Sorangium cellulosum So0157-2   2 2
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Burkholderia phenoliruptrix BR3459a   2 2
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia sp. YI23   9 9
No Yes Burkholderia sp. CCGE1003   3 3
No Yes Burkholderia sp. CCGE1001   2 2
No Yes Burkholderia sp. KJ006   2 2
No Yes Burkholderia thailandensis MSMB121   5 5
No Yes Burkholderia pseudomallei MSHR305   6 6
No Yes Burkholderia pseudomallei NCTC 13179   6 6
No Yes Burkholderia pseudomallei BPC006   6 6
No Yes Burkholderia pseudomallei 1026b   6 6
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   6 6
No Yes Burkholderia pseudomallei 1710b   6 6
No Yes Burkholderia pseudomallei K96243   6 6
No Yes Burkholderia mallei NCTC 10229   4 4
No Yes Burkholderia mallei NCTC 10247   4 4
No Yes Burkholderia mallei ATCC 23344   4 4
No Yes Burkholderia lata   4 4
No Yes Burkholderia ambifaria MC40-6   4 4
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   2 2
No Yes Burkholderia cepacia GG4   2 2
No Yes Variovorax paradoxus B4   4 4
No Yes Variovorax paradoxus EPS   5 5
No Yes Taylorella asinigenitalis 14/45   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Taylorella equigenitalis ATCC 35865   1 1
No Yes Bordetella bronchiseptica MO149   1 1
No Yes Bordetella bronchiseptica 253   1 1
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Aeromonas hydrophila ML09-119   2 2
No Yes Vibrio fischeri ES114   1 1
No Yes Vibrio parahaemolyticus BB22OP   2 2
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   2 2
No Yes Vibrio anguillarum Listonella anguillarum M3   3 3
No Yes Vibrio nigripulchritudo VibrioScope   2 2
No Yes Vibrio vulnificus CMCP6   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   2 2
No Yes Vibrio cholerae O395   2 2
No Yes Vibrio cholerae IEC224   2 2
No Yes Vibrio cholerae O1 str. 2010EL-1786   3 3
No Yes Vibrio cholerae MJ-1236   2 2
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   2 2
No Yes Shewanella baltica BA175   1 1
No Yes Alcanivorax dieselolei B5   1 1
No Yes Thalassolituus oleivorans MIL-1   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   2 2
No Yes Xanthomonas axonopodis pv. citrumelo F1   2 2
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   2 2
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   2 2
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   2 2
No Yes Proteus mirabilis BB2000   3 3
No Yes Edwardsiella tarda C07-087   2 2
No Yes Edwardsiella tarda FL6-60   1 1
No Yes Rahnella aquatilis HX2   10 10
No Yes Yersinia pseudotuberculosis PB1/+   10 10
No Yes Yersinia pseudotuberculosis YPIII   8 8
No Yes Yersinia pseudotuberculosis IP 32953   9 9
No Yes Yersinia pestis biovar Microtus str. 91001   9 9
No Yes Yersinia pestis A1122   9 9
No Yes Yersinia pestis Z176003   8 8
No Yes Yersinia pestis D182038   7 7
No Yes Yersinia pestis D106004   8 8
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   8 8
No Yes Yersinia pestis Nepal516   9 9
No Yes Yersinia pestis Antiqua   9 9
No Yes Yersinia pestis Angola   7 7
No Yes Yersinia pestis CO92   8 8
No Yes Yersinia pestis KIM10+   8 8
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Serratia marcescens FGI94   5 5
No Yes Serratia marcescens WW4   4 4
No Yes Dickeya dadantii Ech586   6 6
No Yes Dickeya dadantii 3937   6 6
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   7 7
No Yes Pantoea ananatis LMG 5342   3 3
No Yes Pantoea ananatis PA13   4 4
No Yes Pantoea ananatis AJ13355   4 4
No Yes Erwinia pyrifoliae DSM 12163   3 3
No Yes Erwinia amylovora CFBP1430   2 2
No Yes Cronobacter sakazakii CMCC 45402   3 3
No Yes Cronobacter sakazakii SP291   3 3
No Yes Cronobacter sakazakii ATCC BAA-894   4 4
No Yes Raoultella ornithinolytica B6   4 4
No Yes Shigella sonnei 53G   3 3
No Yes Shigella boydii Sb227   1 1
No Yes Salmonella bongori N268-08   7 7
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   9 9
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   4 4
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   2 2
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   4 4
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   4 4
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   3 3
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   2 2
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   4 4
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   4 4
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   4 4
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   3 3
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   3 3
No Yes Salmonella enterica serovar Bovismorbificans genomics   2 2
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   2 2
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   5 5
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   5 5
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   6 6
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   2 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   4 4
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   4 4
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   4 4
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   4 4
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   4 4
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   4 4
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   4 4
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   4 4
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   4 4
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   4 4
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   4 4
No Yes Klebsiella oxytoca KCTC 1686   6 6
No Yes Klebsiella pneumoniae JM45   2 2
No Yes Klebsiella pneumoniae CG43   2 2
No Yes Klebsiella pneumoniae KCTC 2242   2 2
No Yes Klebsiella pneumoniae 342   2 2
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   3 3
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   2 2
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   2 2
No Yes Enterobacter aerogenes EA1509E   3 3
No Yes Escherichia coli E24377A   4 4
No Yes Escherichia coli E. coli PMV-1   7 7
No Yes Escherichia coli JJ1886   4 4
No Yes Escherichia coli LY180   4 4
No Yes Escherichia coli APEC O78   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   3 3
No Yes Escherichia coli O104:H4 str. 2009EL-2071   3 3
No Yes Escherichia coli O104:H4 str. 2011C-3493   3 3
No Yes Escherichia coli NA114   3 3
No Yes Escherichia coli P12b   1 1
No Yes Escherichia coli str. 'clone D i2'   4 4
No Yes Escherichia coli str. 'clone D i14'   4 4
No Yes Escherichia coli UM146   6 6
No Yes Escherichia coli 042   3 3
No Yes Escherichia coli Xuzhou21   2 2
No Yes Escherichia coli IHE3034   4 4
No Yes Escherichia coli UMNK88   3 3
No Yes Escherichia coli O83:H1 str. NRG 857C   6 6
No Yes Escherichia coli ABU 83972   5 5
No Yes Escherichia coli KO11FL   4 4
No Yes Escherichia coli KO11FL   4 4
No Yes Escherichia coli LF82   7 7
No Yes Escherichia coli ED1a   4 4
No Yes Escherichia coli IAI39   3 3
No Yes Escherichia coli UMN026   3 3
No Yes Escherichia coli 55989   4 4
No Yes Escherichia coli S88   5 5
No Yes Escherichia coli IAI1   3 3
No Yes Escherichia coli W   4 4
No Yes Escherichia coli W   4 4
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   4 4
No Yes Escherichia coli SE11   3 3
No Yes Escherichia coli APEC O1   7 7
No Yes Escherichia coli O103:H2 str. 12009   4 4
No Yes Escherichia coli UTI89   5 5
No Yes Escherichia coli 536   6 6
No Yes Escherichia coli HS   3 3
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O55:H7 str. RM12579   2 2
No Yes Escherichia coli O55:H7 str. CB9615   2 2
No Yes Escherichia coli O26:H11 str. 11368   2 2
No Yes Escherichia coli CFT073   3 3
No Yes Escherichia coli O111:H- str. 11128   3 3
No Yes Escherichia coli O157:H7 str. TW14359   2 2
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   2 2
No Yes Escherichia coli O157:H7 str. EDL933   2 2
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli str. K-12 substr. MG1655   1 1
No Yes Escherichia coli str. K-12 substr. W3110   1 1
No Yes Escherichia coli str. K-12 substr. DH10B   1 1
No Yes Escherichia coli B str. REL606   1 1
No Yes Enterobacter cloacae EcWSU1   1 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   6 6
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   5 5
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   5 5
No Yes Azotobacter vinelandii CA6   2 2
No Yes Azotobacter vinelandii CA   2 2
No Yes Pseudomonas denitrificans ATCC 13867   4 4
No Yes Pseudomonas syringae pv. phaseolicola 1448A   7 7
No Yes Pseudomonas syringae pv. syringae B728a   4 4
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   1 1
No Yes Pseudomonas monteilii SB3101   3 3
No Yes Pseudomonas monteilii SB3078   3 3
No Yes Pseudomonas putida HB3267   6 6
No Yes Pseudomonas putida NBRC 14164   4 4
No Yes Pseudomonas putida DOT-T1E   3 3
No Yes Pseudomonas putida S16   3 3
No Yes Pseudomonas putida W619   3 3
No Yes Pseudomonas putida ND6   3 3
No Yes Pseudomonas putida KT2440   6 6
No Yes Pseudomonas putida GB-1   5 5
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   2 2
No Yes Pseudomonas fluorescens F113   3 3
No Yes Pseudomonas fluorescens A506   2 2
No Yes Pseudomonas fluorescens R124   2 2
No Yes Pseudomonas fluorescens Pf0-1   4 4
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Pseudomonas mendocina NK-01   1 1
No Yes Pseudomonas aeruginosa SCV20265   5 5
No Yes Pseudomonas aeruginosa MTB-1   5 5
No Yes Pseudomonas aeruginosa LES431   5 5
No Yes Pseudomonas aeruginosa RP73   5 5
No Yes Pseudomonas aeruginosa B136-33   5 5
No Yes Pseudomonas aeruginosa PA1R   4 4
No Yes Pseudomonas aeruginosa PA1   4 4
No Yes Pseudomonas aeruginosa DK2   5 5
No Yes Pseudomonas aeruginosa NCGM2.S1   6 6
No Yes Pseudomonas aeruginosa M18   5 5
No Yes Pseudomonas aeruginosa LESB58   5 5
No Yes Pseudomonas aeruginosa PA7   3 3
No Yes Pseudomonas aeruginosa PAO1   5 5
No Yes Acinetobacter calcoaceticus ruh2202   1 1
No Yes Acinetobacter baumannii ZW85-1   1 1
No Yes Acinetobacter baumannii TYTH-1   1 1
No Yes Acinetobacter baumannii BJAB0868   1 1
No Yes Acinetobacter baumannii BJAB0715   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii TCDC-AB0715   1 1
No Yes Acinetobacter baumannii MDR-TJ   1 1
No Yes Acinetobacter baumannii 1656-2   1 1
No Yes Acinetobacter baumannii ATCC 19606   1 1
No Yes Acinetobacter baumannii AB307-0294   1 1
No Yes Acinetobacter baumannii AYE   1 1
No Yes Acinetobacter baumannii SDF   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   1 1
No Yes Acinetobacter baumannii AB0057   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Acinetobacter radioresistens SH164   1 1
No Yes Acinetobacter johnsonii SH046   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   1 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   1 1
No Yes 1_050719N (meta-genome)   3 3
No Yes 2_050719S (meta-genome)   3 3
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   4 4
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   53 53
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Combined (meta-genome)   81 81
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   97 97
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   21 21
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   40 40
No Yes Dump bottom (Dump bottom) (meta-genome)   15 15
No Yes Dump top (Dump top) (meta-genome)   13 13
No Yes Endophytic microbiome from Rice (meta-genome)   7 7
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   52 52
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   114 114
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   126 126
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   5 5
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   21 20
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   2 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   6 6
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   8 8
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   17 17
No Yes NCBI 2017_08 genome   105568 105509
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   12 12
No Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma1 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   5 5
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   5 5
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   5 5
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Sludge/US, Jazz Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   10 10
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   14 14
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   16 16
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   16 16
No Yes STRING v9.0.5 (STRING)   631 631
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   35 35
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   10441 10417
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   62 62
No Yes NCBI plasmid sequences (Plasmids)   64 64
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   99 99
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   119 119
No Yes TargetDB (Targets)   35 35
No Yes The Salmonella enterica Pan-genome (meta-genome)   121 121

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