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Allene oxide cyclase-like superfamily domain assignments
in
Brachypodium distachyon

Assignment details

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Brachypodium distachyon has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
EG:BRADI1G15840.1   8.37e-86   70-243   Allene oxide cyclase-like  
 
Weak hits:
EG:BRADI1G48292.1   0.034   108-142   Allene oxide cyclase-like  
EG:BRADI1G59400.1   0.00536   93-155   Allene oxide cyclase-like  
EG:BRADI4G22270.1   0.0497   75-113   Allene oxide cyclase-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   1793 1793
No Yes Selaginella moellendorffii   2 2
No Yes Pinus taeda Loblolly pine 1 1
No Yes Picea abies Norway spruce 2 2
No Yes Eucalyptus grandis v201 Rose gum 1 1
No Yes Theobroma cacao B97-61/B2 v1 Cacao 3 3
No Yes Gossypium raimondii v221   7 7
No Yes Citrus clementina v165   3 3
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 4 4
No Yes Capsella rubella v183   4 4
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 6 6
No Yes Phaseolus vulgaris v186 French bean 3 3
No Yes Glycine max v109 Soybean 6 6
No Yes Cucumis sativus v122 Cucumber 2 2
No Yes Fragaria vesca Wild strawberry 3 3
No Yes Malus domestica v196 Apple 10 10
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 3 3
No Yes Populus trichocarpa v156 Black cottonwood 2 2
No Yes Vitis vinifera Wine grape 2 2
No Yes Mimulus guttatus v140 Spotted monkey flower 3 3
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 1 1
No Yes Actinidia chinensis Hongyang   1 1
No Yes Aquilegia coerulea v195   2 2
No Yes Triticum urartu 22   1 1
No Yes Triticum aestivum 22 Bread wheat 3 3
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 2 2
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   2 2
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   3 3
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 5 5
No Yes Zea mays v181 Maize 5 5
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 4 4
No Yes Musa acuminata 22 Wild Malaysian banana 4 4
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   5 5
No Yes Volvox carteri f. nagariensis   6 5
No Yes Volvox carteri v199   6 6
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Fragilariopsis cylindrus   2 2
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Nocardia cyriacigeorgica GUH-2   1 1
No Yes Mycobacterium rhodesiae NBB3   1 1
No Yes Sphaerobacter thermophilus DSM 20745   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Salmonella bongori NCTC 12419   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 3 3
No Yes Hordeum vulgare 22 Domesticated barley 4 4
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 2
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Glaciecola psychrophila 170   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   4 4
No Yes Malus x domestica (Duplicate) Apple 10 10
No Yes Ricinus communis (Early assembly) Castor bean 2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   645 644
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   26 26
No Yes Uniprot 2018_03 genome   546 543
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   68 68
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   177 177
No Yes TargetDB (Targets)   8 8
No Yes The Salmonella enterica Pan-genome (meta-genome)   1 1

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