SUPERFAMILY 1.75 HMM library and genome assignments server

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MFPT repeat-like superfamily domain assignments
in
Aquilegia coerulea v195

Network of domain occurrence in all genomes



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Select to display   Genome       Domains   Proteins
No Yes ALL   1199 1199
No Yes Pristionchus pacificus   7 4
No Yes Meloidogyne incognita Southern root-knot nematode 18 11
No Yes Meloidogyne hapla   2 2
No Yes Onchocerca volvulus 22   8 5
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 17 13
No Yes Caenorhabditis japonica   11 6
No Yes Caenorhabditis brenneri   20 12
No Yes Caenorhabditis remanei   18 10
No Yes Caenorhabditis elegans 76_235 Roundworm 19 11
No Yes Caenorhabditis briggsae 2   11 6
No Yes Schistosoma mansoni   1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 18 10
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 19 11
No Yes Loa loa v3.3 (Request) Eye worm 12 7
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 13 10
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 13 8
No Yes Caenorhabditis elegans 69_215 Roundworm 17 10
No Yes NCBI 2017_08 genome   92 53
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   79 46
No Yes Uniprot 2018_03 genome   643 387
No Yes PDB chains (SCOP 1.75) (PDB)   4 2
No Yes Protein Data Bank (all PDB sequenc)   6 3
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   18 18
No Yes TargetDB (Targets)   11 7

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]