SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


AF0625-like superfamily domain assignments
in
all genomes

Assignment details

(show help)

25 selected genomes have 59 significant domains in 57 proteins.

Showing genomes 1 to 25 of 267
  1 2 3 4 5 6 7 8 9 10 11   Next Last

Selaginella moellendorffii has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Selmo1|158189|estExt_Genewise1.C_750199   1.19e-61   3-324   AF0625-like  
jgi|Selmo1|99197|e_gw1.21.123.1   2.35e-62   3-324   AF0625-like  
 
Weak hits:
jgi|Selmo1|425637|fgenesh2_pg.C_scaffold_75000096   0.00549   1-22   AF0625-like  

Picea abies has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
MA_10436263g0010   3.4e-28   23-151   AF0625-like  

Eucalyptus grandis v201 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
Eucgr.B03119.1|PACid:23568370   0.0000249   2-59   AF0625-like  
Eucgr.J01102.1|PACid:23599036   1.83e-74   3-315   AF0625-like  
Eucgr.J01102.2|PACid:23599037   1.83e-65   3-280   AF0625-like  
Eucgr.K02549.1|PACid:23604152   3.66e-54   3-276   AF0625-like  

Theobroma cacao B97-61/B2 v1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
Tc02_g031410   1.31e-72   3-316   AF0625-like  
Tc03_g013030   1.57e-61   3-281   AF0625-like  

Gossypium raimondii v221 has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
Gorai.005G147600.1|PACid:26805819   1.96e-71   3-318   AF0625-like  
Gorai.005G147600.2|PACid:26805820   1.83e-66   3-249   AF0625-like  
Gorai.005G147600.3|PACid:26805821   2.49e-71   3-311   AF0625-like  
Gorai.005G147600.4|PACid:26805822   2.35e-46   63-273   AF0625-like  
Gorai.005G147600.5|PACid:26805823   5.23e-59   3-228   AF0625-like  
Gorai.005G147600.6|PACid:26805824   2.09e-49   3-185   AF0625-like  
Gorai.007G040300.1|PACid:26784464   2.09e-73   3-315   AF0625-like  
Gorai.007G040300.2|PACid:26784462   2.09e-73   3-315   AF0625-like  
Gorai.007G040300.3|PACid:26784463   2.09e-73   3-315   AF0625-like  
Gorai.007G040300.4|PACid:26784465   1.2e-67   3-249   AF0625-like  

Citrus clementina v165 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
clementine0.9_016163m|PACid:19259635   6.93e-75   2-312   AF0625-like  
clementine0.9_020948m|PACid:19259636   6.02e-63   2-226   AF0625-like  
 
Weak hits:
clementine0.9_026571m|PACid:19280248   0.00654   10-83   AF0625-like  

Citrus sinensis v154 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
orange1.1g021113m|PACid:18121623   3.79e-75   2-312   AF0625-like  

Thellungiella halophila v173 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Thhalv10004640m|PACid:20199839   1.19e-75   2-307   AF0625-like  

Brassica rapa Chiifu-401 1.2 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
Bra025135   1.11e-75   2-306   AF0625-like  
Bra026533   2.09e-55   3-250   AF0625-like  
 
Weak hits:
Bra026342   0.0602   193-242   AF0625-like  

Capsella rubella v183 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Carubv10017669m|PACid:20886392   1.09e-75   2-310   AF0625-like  

Arabidopsis lyrata has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Araly1|322675|fgenesh1_pm.C_scaffold_5000219   1.26e-76   46-356   AF0625-like  
jgi|Araly1|874312|Al_scaffold_0003_2953   6.54e-77   2-312   AF0625-like  

Arabidopsis thaliana 10 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
AT2G03800.1   1.96e-75   2-312   AF0625-like  

Carica papaya has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
evm.TU.supercontig_1.164   4.58e-68   3-286   AF0625-like  
evm.TU.supercontig_3.240   1.7e-57   3-322   AF0625-like  

Medicago truncatula has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
Medtr8g066120.1   4.32e-76   4-311   AF0625-like  
Medtr8g066120.2   8.76e-63   49-270   AF0625-like  
Medtr8g066120.3   3.53e-54   49-235   AF0625-like  
 
Weak hits:
Medtr3g073610.1   0.00379   3-45   AF0625-like  

Phaseolus vulgaris v186 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Phvulv091011420m|PACid:23536653   1.31e-75   65-376   AF0625-like  

Glycine max v109 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
Glyma05g31740.1|PACid:16260331   4.05e-76   3-310   AF0625-like  
Glyma05g31740.2|PACid:16260332   6.8e-71   3-252   AF0625-like  
 
Weak hits:
Glyma14g06930.1|PACid:16294643   0.0445   497-538   AF0625-like  

Cucumis sativus v122 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Cucsa.328040.1|PACid:16978144   1.31e-73   3-316   AF0625-like  

Fragaria vesca has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gene04539   2.49e-70   3-308   AF0625-like  

Malus domestica v196 has 9 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
MDP0000121948|PACid:22627255   7.32e-55   2-226   AF0625-like  
  0.00000589   267-361   AF0625-like  
MDP0000150409|PACid:22680977   7.32e-55   2-226   AF0625-like  
  0.00000589   267-361   AF0625-like  
MDP0000181670|PACid:22631160   2.88e-32   12-209   AF0625-like  
MDP0000194506|PACid:22635563   0.00000575   21-115   AF0625-like  
MDP0000338031|PACid:22660059   7.59e-52   38-229   AF0625-like  
MDP0000764014|PACid:22677827   0.00000602   27-56   AF0625-like  
MDP0000829867|PACid:22622568   0.000000262   20-114   AF0625-like  
 
Weak hits:
MDP0000150114|PACid:22647117   0.000314   25-72   AF0625-like  
MDP0000615656|PACid:22621131   0.0068   151-187   AF0625-like  
MDP0000944786|PACid:22644277   0.000327   26-56   AF0625-like  

Prunus persica v139 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ppa008781m|PACid:17645928   7.06e-73   3-318   AF0625-like  
ppa009652m|PACid:17645929   1.7e-65   9-282   AF0625-like  

Linum usitatissimum v200 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Lus10036828|PACid:23171274   3.53e-69   3-322   AF0625-like  

Manihot esculenta v147 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
cassava4.1_012106m|PACid:17980226   4.84e-74   3-315   AF0625-like  
cassava4.1_012948m|PACid:17962773   3.79e-65   3-256   AF0625-like  
cassava4.1_014501m|PACid:17962774   2.49e-58   3-247   AF0625-like  
cassava4.1_015492m|PACid:17962775   2.75e-50   3-193   AF0625-like  
cassava4.1_015592m|PACid:17980227   8.76e-62   3-225   AF0625-like  

Populus trichocarpa v156 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
POPTR_0015s03480.1|PACid:18233375   3.79e-73   3-313   AF0625-like  

Vitis vinifera has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
GSVIVT01008152001   5.89e-76   3-315   AF0625-like  

Mimulus guttatus v140 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
mgv1a009048m|PACid:17687293   7.19e-73   41-351   AF0625-like  

  1 2 3 4 5 6 7 8 9 10 11   Next Last
Showing genomes 1 to 25 of 267

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a AF0625-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   3986 3986
No Yes Selaginella moellendorffii   2 2
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 4 4
No Yes Theobroma cacao B97-61/B2 v1 Cacao 2 2
No Yes Gossypium raimondii v221   10 10
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 1 1
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Carica papaya Papaya 2 2
No Yes Medicago truncatula Barrel medic 3 3
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 9 7
No Yes Prunus persica v139 Peach 2 2
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Manihot esculenta v147 Cassava 5 5
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 8 8
No Yes Actinidia chinensis Hongyang   2 2
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum urartu 22   2 2
No Yes Triticum aestivum 22 Bread wheat 6 6
No Yes Aegilops tauschii 22   3 3
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 7 7
No Yes Oryza meridionalis 22   3 3
No Yes Oryza glumaepatula 22   6 5
No Yes Oryza glaberrima African rice 2 2
No Yes Oryza punctata 22   8 5
No Yes Oryza nivara 22   4 4
No Yes Oryza brachyantha 22 Malo sina 2 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 3 3
No Yes Oryza sativa v193 Rice 3 3
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 4 4
No Yes Panicum virgatum v202 Switchgrass 3 3
No Yes Setaria italica v164 Foxtail millet 2 2
No Yes Zea mays subsp. mays Maize 4 4
No Yes Zea mays v181 Maize 4 4
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 2 2
No Yes Musa acuminata 22 Wild Malaysian banana 4 4
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   2 2
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Clostridium difficile 630   1 1
No Yes Clostridium sticklandii DSM 519   1 1
No Yes Thermovirga lienii DSM 17291   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Candidatus Caldiarchaeum subterraneum   1 1
No Yes Cenarchaeum symbiosum A   1 1
No Yes Candidatus Nitrosopumilus sp. AR2   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Candidatus Korarchaeum cryptofilum OPF8   1 1
No Yes Acidilobus saccharovorans 345-15   1 1
No Yes Fervidicoccus fontis Kam940   1 1
No Yes Pyrolobus fumarii 1A   1 1
No Yes Hyperthermus butylicus DSM 5456   1 1
No Yes Thermogladius cellulolyticus 1633   1 1
No Yes Ignisphaera aggregans DSM 17230   1 1
No Yes Aeropyrum pernix K1   1 1
No Yes Ignicoccus hospitalis KIN4/I   1 1
No Yes Thermosphaera aggregans DSM 11486   1 1
No Yes Staphylothermus hellenicus DSM 12710   1 1
No Yes Staphylothermus marinus F1   1 1
No Yes Desulfurococcus fermentans DSM 16532   1 1
No Yes Desulfurococcus kamchatkensis 1221n   1 1
No Yes Desulfurococcus mucosus DSM 2162   1 1
No Yes Metallosphaera cuprina Ar-4   1 1
No Yes Metallosphaera sedula DSM 5348   1 1
No Yes Acidianus hospitalis W1   1 1
No Yes Sulfolobus tokodaii str. 7   1 1
No Yes Sulfolobus islandicus Y.N.15.51   1 1
No Yes Sulfolobus solfataricus P2   1 1
No Yes Sulfolobus acidocaldarius DSM 639   1 1
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes Vulcanisaeta distributa DSM 14429   1 1
No Yes Caldivirga maquilingensis IC-167   1 1
No Yes Pyrobaculum sp. 1860   1 1
No Yes Pyrobaculum calidifontis JCM 11548   1 1
No Yes Pyrobaculum arsenaticum DSM 13514   1 1
No Yes Pyrobaculum oguniense TE7   1 1
No Yes Thermoproteus neutrophilus V24Sta   1 1
No Yes Pyrobaculum aerophilum str. IM2   1 1
No Yes Pyrobaculum islandicum DSM 4184   1 1
No Yes Thermoproteus uzoniensis 768-20   1 1
No Yes Thermoproteus tenax Kra 1   1 1
No Yes halophilic archaeon DL31   1 1
No Yes Methanocella conradii HZ254   1 1
No Yes Methanocella paludicola SANAE   1 1
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosaeta thermophila PT   1 1
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosalsum zhilinae DSM 4017   1 1
No Yes Methanohalobium evestigatum Z-7303   1 1
No Yes Methanococcoides burtonii DSM 6242   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Methanohalophilus mahii DSM 5219   1 1
No Yes Methanosphaerula palustris E1-9c   1 1
No Yes Methanoregula boonei 6A8   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Methanocorpusculum labreanum Z   1 1
No Yes Methanoplanus petrolearius DSM 11571   1 1
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Methanoculleus marisnigri JR1   1 1
No Yes Methanopyrus kandleri AV19   1 1
No Yes Ferroglobus placidus DSM 10642   1 1
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Archaeoglobus veneficus SNP6   1 1
No Yes Archaeoglobus fulgidus DSM 4304   1 1
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus onnurineus NA1   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Thermococcus sibiricus MM 739   1 1
No Yes Thermococcus barophilus MP   1 1
No Yes Pyrococcus sp. ST04   1 1
No Yes Pyrococcus yayanosii CH1   1 1
No Yes Pyrococcus horikoshii OT3   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Thermoplasmatales archaeon BRNA1   1 1
No Yes Thermoplasma volcanium GSS1   1 1
No Yes Thermoplasma acidophilum DSM 1728   1 1
No Yes Picrophilus torridus DSM 9790   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Natrinema sp. J7-2   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Halorubrum lacusprofundi ATCC 49239   1 1
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Halomicrobium mukohataei DSM 12286   1 1
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Natronomonas pharaonis DSM 2160   1 1
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Haloarcula marismortui ATCC 43049   1 1
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Halobacterium salinarum R1   1 1
No Yes Halobacterium sp. NRC-1   1 1
No Yes Methanotorris igneus Kol 5   1 1
No Yes Methanocaldococcus sp. FS406-22   1 1
No Yes Methanocaldococcus fervens AG86   1 1
No Yes Methanocaldococcus vulcanius M7   1 1
No Yes methanocaldococcus infernus ME   1 1
No Yes Methanocaldococcus jannaschii DSM 2661   1 1
No Yes Methanothermococcus okinawensis IH1   1 1
No Yes Methanococcus aeolicus Nankai-3   1 1
No Yes Methanococcus maripaludis C5   1 1
No Yes Methanococcus voltae A3   1 1
No Yes Methanococcus vannielii SB   1 1
No Yes Aciduliprofundum sp. MAR08-339   1 1
No Yes Aciduliprofundum boonei T469   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 2 2
No Yes Hordeum vulgare 22 Domesticated barley 4 4
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 3 3
No Yes Clostridium difficile BI1   1 1
No Yes Clostridium difficile R20291   1 1
No Yes Clostridium difficile CD196   1 1
No Yes Burkholderia sp. KJ006   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   1 1
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   1 1
No Yes Caldisphaera lagunensis DSM 15908   1 1
No Yes Aeropyrum camini SY1 = JCM 12091   1 1
No Yes Sulfolobus islandicus LAL14/1   1 1
No Yes Sulfolobus islandicus REY15A   1 1
No Yes Sulfolobus islandicus HVE10/4   1 1
No Yes Sulfolobus islandicus Y.G.57.14   1 1
No Yes Sulfolobus islandicus L.S.2.15   1 1
No Yes Sulfolobus islandicus M.16.27   1 1
No Yes Sulfolobus islandicus M.14.25   1 1
No Yes Sulfolobus islandicus M.16.4   1 1
No Yes Sulfolobus islandicus L.D.8.5   1 1
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes Sulfolobus acidocaldarius SUSAZ   1 1
No Yes Sulfolobus acidocaldarius Ron12/I   1 1
No Yes Sulfolobus acidocaldarius N8   1 1
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus sp. CL1   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus sp. NA2   1 1
No Yes Pyrococcus furiosus DSM 3638   1 1
No Yes Candidatus Methanomethylophilus alvus Mx1201   1 1
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   1 1
No Yes Ferroplasma acidarmanus fer1   1 1
No Yes Halovivax ruber XH-70   1 1
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Natronococcus occultus SP4   1 1
No Yes Natronobacterium gregoryi SP2   1 1
No Yes Haloquadratum walsbyi C23   1 1
No Yes Halorhabdus tiamatea SARL4B   1 1
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes Haloarcula hispanica N601   1 1
No Yes Methanococcus maripaludis X1   1 1
No Yes Methanococcus maripaludis C6   1 1
No Yes Methanococcus maripaludis C7   1 1
No Yes Methanococcus maripaludis S2   1 1
No Yes Lotus japonicus (Early assembly)   2 2
No Yes Malus x domestica (Duplicate) Apple 9 7
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Phoenix dactylifera (Early draft) Date palm 2 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   8 8
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Bath Hot Springs, filamentous community (meta-genome)   2 2
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP10 from Narrow Gauge (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   18 18
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   34 34
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   6 6
No Yes NCBI 2017_08 genome   1757 1757
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   80 80
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   1354 1350
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   6 6
No Yes Global Ocean Sampling Expedition (GOS)   88 87
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   20 20
No Yes TargetDB (Targets)   7 7

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]