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CcmK-like superfamily domain assignments
in
Clostridium perfringens ATCC 13124

Assignment details

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Clostridium perfringens ATCC 13124 has 6 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|110800071|ref|YP_695343.1|   8.89e-28   3-95   CcmK-like  
gi|110800197|ref|YP_695345.1|   8.76e-32   5-91   CcmK-like  
gi|110801029|ref|YP_695350.1|   1.57e-20   3-95   CcmK-like  
  3.4e-16   97-182   CcmK-like  
gi|110801147|ref|YP_695342.1|   0.00000288   155-210   CcmK-like  
  0.00051   34-83   CcmK-like  
gi|110801251|ref|YP_695335.1|   0.0000000000000183   44-107   CcmK-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   247980 247980
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Chlorella vulgaris   1 1
No Yes Leptolyngbya sp. PCC 7376   7 6
No Yes Pseudanabaena sp. PCC 7367   6 5
No Yes Acaryochloris marina MBIC11017   9 8
No Yes Synechocystis sp. PCC 6803   7 6
No Yes Thermosynechococcus sp. NK55   4 4
No Yes Thermosynechococcus elongatus BP-1   6 5
No Yes Synechococcus sp. PCC 7502   6 5
No Yes Synechococcus sp. PCC 6312   6 5
No Yes Synechococcus sp. CC9311   3 3
No Yes Synechococcus elongatus PCC 7942   5 4
No Yes Prochlorococcus marinus str. MIT 9515   2 2
No Yes Microcoleus sp. PCC 7113   6 5
No Yes Trichodesmium erythraeum IMS101   7 6
No Yes Geitlerinema sp. PCC 7407   6 5
No Yes Cyanothece sp. PCC 8802   6 5
No Yes Gloeocapsa sp. PCC 7428   5 4
No Yes Halothece sp. PCC 7418   7 6
No Yes Microcystis aeruginosa NIES-843   6 5
No Yes Gloeobacter violaceus PCC 7421   5 4
No Yes Rivularia sp. PCC 7116   6 5
No Yes Calothrix sp. PCC 7507   6 5
No Yes Anabaena variabilis ATCC 29413   6 5
No Yes 'Nostoc azollae' 0708   8 7
No Yes Nostoc sp. PCC 7107   6 5
No Yes Nostoc punctiforme PCC 73102   6 5
No Yes Nostoc sp. PCC 7120   6 5
No Yes Nostoc sp. PCC 7524   7 6
No Yes Anabaena sp. 90   6 5
No Yes Olsenella uli DSM 7084   8 8
No Yes Acidimicrobium ferrooxidans DSM 10331   3 3
No Yes Nakamurella multipartita DSM 44233   3 3
No Yes Pseudonocardia dioxanivorans CB1190   3 3
No Yes Nocardioides sp. JS614   1 1
No Yes Propionibacterium propionicum F0230a   6 5
No Yes Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1   6 5
No Yes Verrucosispora maris AB-18-032   2 2
No Yes Rhodococcus jostii RHA1   4 4
No Yes Mycobacterium sp. JLS   3 2
No Yes Mycobacterium vanbaalenii PYR-1   3 2
No Yes Mycobacterium gilvum PYR-GCK   3 2
No Yes Mycobacterium chubuense NBB4   3 2
No Yes Mycobacterium smegmatis str. MC2 155   3 2
No Yes Anaerolinea thermophila UNI-1   4 4
No Yes Symbiobacterium thermophilum IAM 14863   1 1
No Yes Ruminococcus sp.   12 10
No Yes Oscillibacter valericigenes Sjm18-20   8 6
No Yes Thermincola potens JR   13 10
No Yes Desulfosporosinus acidiphilus SJ4   8 7
No Yes Desulfosporosinus orientis DSM 765   17 14
No Yes Desulfitobacterium hafniense Y51   12 10
No Yes Desulfitobacterium dehalogenans ATCC 51507   12 10
No Yes Desulfotomaculum reducens MI-1   15 13
No Yes Desulfotomaculum ruminis DSM 2154   8 7
No Yes Acetobacterium woodii DSM 1030   10 8
No Yes Eubacterium limosum KIST612   9 7
No Yes Clostridium difficile 630   6 5
No Yes Clostridium sticklandii DSM 519   10 9
No Yes Clostridium saccharolyticum WM1   16 16
No Yes Clostridium phytofermentans ISDg   20 17
No Yes Clostridium lentocellum DSM 5427   6 5
No Yes [Ruminococcus] obeum   12 10
No Yes [Ruminococcus] torques   12 10
No Yes Alkaliphilus oremlandii OhILAs   15 14
No Yes Alkaliphilus metalliredigens QYMF   18 15
No Yes Clostridium novyi NT   4 3
No Yes Clostridium ljungdahlii DSM 13528   17 14
No Yes Clostridium kluyveri DSM 555   15 10
No Yes Clostridium beijerinckii NCIMB 8052   8 6
No Yes Clostridium tetani E88   7 6
No Yes Clostridium perfringens ATCC 13124   6 5
No Yes Clostridium botulinum A str. ATCC 3502   6 6
No Yes Mahella australiensis 50-1 BON   6 5
No Yes Thermosediminibacter oceani DSM 16646   6 4
No Yes Thermoanaerobacterium xylanolyticum LX-11   6 5
No Yes Tepidanaerobacter acetatoxydans Re1   1 1
No Yes Carboxydothermus hydrogenoformans Z-2901   5 4
No Yes Thermoanaerobacter sp. X514   7 5
No Yes Halanaerobium hydrogeniformans   12 9
No Yes Halanaerobium praevalens DSM 2228   9 7
No Yes Enterococcus sp. 7L76   2 2
No Yes Enterococcus faecalis 62   3 3
No Yes Lactobacillus kefiranofaciens ZW3   1 1
No Yes Lactobacillus reuteri DSM 20016   6 5
No Yes Lactobacillus brevis ATCC 367   6 5
No Yes Pediococcus claussenii ATCC BAA-344   6 5
No Yes Streptococcus sp. I-P16   3 3
No Yes Streptococcus intermedius JTH08   4 4
No Yes Streptococcus sanguinis SK36   6 5
No Yes Brevibacillus brevis NBRC 100599   4 4
No Yes Bacillus selenitireducens MLS10   5 5
No Yes Listeria welshimeri serovar 6b str. SLCC5334   13 10
No Yes Listeria innocua Clip11262   13 10
No Yes Listeria seeligeri serovar 1/2b str. SLCC3954   13 10
No Yes Listeria monocytogenes serotype 4b str. CLIP 80459   13 10
No Yes Listeria ivanovii subsp. ivanovii PAM 55   13 10
No Yes Geobacillus thermoglucosidasius C56-YS93   5 4
No Yes Lysinibacillus sphaericus C3-41   4 4
No Yes Bacillus megaterium DSM 319   4 4
No Yes Melioribacter roseus P3M   7 6
No Yes Ignavibacterium album JCM 16511   2 2
No Yes Chloroherpeton thalassium ATCC 35110   2 2
No Yes Isosphaera pallida ATCC 43644   3 3
No Yes Planctomyces brasiliensis DSM 5305   2 2
No Yes Planctomyces limnophilus DSM 3776   2 2
No Yes Rhodopirellula baltica SH 1   2 2
No Yes Pirellula staleyi DSM 6068   4 3
No Yes Opitutus terrae PB90-1   5 4
No Yes Fretibacterium fastidiosum   4 3
No Yes Thermovirga lienii DSM 17291   9 7
No Yes Thermanaerovibrio acidaminovorans DSM 6589   7 5
No Yes Anaerobaculum mobile DSM 13181   8 6
No Yes Brachyspira intermedia PWS/A   9 7
No Yes Candidatus Solibacter usitatus Ellin6076   9 6
No Yes Sebaldella termitidis ATCC 33386   10 8
No Yes Leptotrichia buccalis C-1013-b   6 6
No Yes Ilyobacter polytropus DSM 2926   8 5
No Yes Fusobacterium nucleatum subsp. nucleatum ATCC 25586   5 4
No Yes Acidithiobacillus ferrivorans SS3   2 2
No Yes Acidithiobacillus caldus SM-1   3 3
No Yes Acidithiobacillus ferrooxidans ATCC 53993   3 3
No Yes Desulfotalea psychrophila LSv54   15 11
No Yes Desulfatibacillum alkenivorans AK-01   6 4
No Yes Desulfovibrio alaskensis G20   10 7
No Yes Desulfovibrio salexigens DSM 2638   10 7
No Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774   10 7
No Yes Haliangium ochraceum DSM 14365   5 4
No Yes Methylibium petroleiphilum PM1   3 3
No Yes Thiomonas arsenitoxydans   4 4
No Yes Thiomonas intermedia K12   4 4
No Yes Verminephrobacter eiseniae EF01-2   2 2
No Yes Variovorax paradoxus S110   1 1
No Yes Thiobacillus denitrificans ATCC 25259   3 3
No Yes Nitrosomonas eutropha C91   3 3
No Yes Rhodobacter capsulatus SB 1003   5 4
No Yes Rhodospirillum rubrum F11   6 5
No Yes Nitrobacter winogradskyi Nb-255   3 3
No Yes Nitrobacter hamburgensis X14   3 3
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Tolumonas auensis DSM 9187   8 6
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   4 4
No Yes Vibrio furnissii NCTC 11218   4 4
No Yes Shewanella putrefaciens CN-32   5 4
No Yes Marinobacter aquaeolei VT8   6 5
No Yes Halothiobacillus neapolitanus c2   4 4
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   4 4
No Yes Thioalkalivibrio sp. K90mix   4 4
No Yes Allochromatium vinosum DSM 180   3 3
No Yes Proteus mirabilis HI4320   4 4
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   8 6
No Yes Pectobacterium wasabiae WPP163   5 4
No Yes Pectobacterium sp. SCC3193   5 4
No Yes Sodalis glossinidius str. 'morsitans'   1 1
No Yes Escherichia blattae DSM 4481   4 4
No Yes Enterobacteriaceae bacterium strain FGI 57   4 4
No Yes Shigella sonnei Ss046   12 10
No Yes Shigella flexneri 5 str. 8401   3 3
No Yes Shigella dysenteriae Sd197   3 3
No Yes Shigella boydii CDC 3083-94   4 4
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   11 9
No Yes Klebsiella oxytoca E718   16 14
No Yes Klebsiella variicola At-22   16 14
No Yes Klebsiella pneumoniae NTUH-K2044   12 10
No Yes Enterobacter aerogenes KCTC 2190   4 4
No Yes Escherichia fergusonii ATCC 35469   16 13
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   4 4
No Yes Citrobacter rodentium ICC168   12 10
No Yes Citrobacter koseri ATCC BAA-895   12 10
No Yes Thiomicrospira crunogena XCL-2   4 4
No Yes Thioalkalimicrobium cyclicum ALM1   3 3
No Yes Chroococcidiopsis thermalis PCC 7203   7 6
No Yes Chamaesiphon minutus PCC 6605   6 5
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   7 6
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   7 6
No Yes Synechocystis sp. PCC 6803 substr. GT-I   7 6
No Yes Synechocystis sp. PCC 6803   7 6
No Yes Cyanobium gracile PCC 6307   3 3
No Yes Dactylococcopsis salina PCC 8305   7 6
No Yes Synechococcus sp. JA-2-3B'a(2-13)   5 4
No Yes Synechococcus sp. JA-3-3Ab   5 4
No Yes Synechococcus sp. CC9902   3 3
No Yes Synechococcus sp. RCC307   3 3
No Yes Synechococcus sp. CC9605   3 3
No Yes Synechococcus sp. WH 8102   3 3
No Yes Synechococcus sp. WH 7803   3 3
No Yes Synechococcus sp. PCC 7002   6 5
No Yes Synechococcus elongatus PCC 6301   5 4
No Yes Prochlorococcus marinus str. NATL1A   3 3
No Yes Prochlorococcus marinus str. MIT 9301   2 2
No Yes Prochlorococcus marinus str. AS9601   2 2
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   3 3
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   2 2
No Yes Prochlorococcus marinus str. MIT 9215   2 2
No Yes Prochlorococcus marinus str. MIT 9211   3 3
No Yes Prochlorococcus marinus str. MIT 9313   3 3
No Yes Prochlorococcus marinus str. MIT 9312   2 2
No Yes Prochlorococcus marinus str. MIT 9303   3 3
No Yes Prochlorococcus marinus str. NATL2A   3 3
No Yes Crinalium epipsammum PCC 9333   5 4
No Yes Oscillatoria nigro-viridis PCC 7112   5 4
No Yes Oscillatoria acuminata PCC 6304   6 5
No Yes Arthrospira platensis NIES-39   6 5
No Yes Cyanothece sp. PCC 7822   5 5
No Yes Cyanothece sp. PCC 7425   7 6
No Yes Cyanothece sp. PCC 7424   7 6
No Yes Cyanothece sp. ATCC 51142   6 5
No Yes Cyanothece sp. PCC 8801   6 5
No Yes Cyanobacterium aponinum PCC 10605   7 6
No Yes Cyanobacterium stanieri PCC 7202   7 6
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   5 4
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   8 7
No Yes Stanieria cyanosphaera PCC 7437   7 6
No Yes Calothrix parietina Calothrix sp. PCC 6303   6 5
No Yes Cylindrospermum stagnale PCC 7417   6 5
No Yes Anabaena cylindrica PCC 7122   7 6
No Yes Mycobacterium sp. KMS   3 2
No Yes Mycobacterium sp. MCS   3 2
No Yes Mycobacterium gilvum Spyr1   3 2
No Yes Mycobacterium smegmatis str. MC2 155   3 2
No Yes Clostridium acidurici 9a   6 5
No Yes Desulfosporosinus meridiei DSM 13257   16 13
No Yes Desulfitobacterium hafniense DCB-2   12 10
No Yes Clostridium difficile BI1   6 5
No Yes Clostridium difficile R20291   6 5
No Yes Clostridium difficile CD196   6 5
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   8 6
No Yes Coprococcus catus GD/7   4 3
No Yes Clostridium autoethanogenum DSM 10061   17 14
No Yes Clostridium kluyveri NBRC 12016   15 10
No Yes Clostridium tetani genome 12124569   12 11
No Yes Clostridium perfringens str. 13   6 5
No Yes Clostridium botulinum H04402 065   6 6
No Yes Clostridium botulinum BKT015925   4 4
No Yes Clostridium botulinum F str. 230613   7 6
No Yes Clostridium botulinum F str. Langeland   8 7
No Yes Clostridium botulinum E3 str. Alaska E43   15 12
No Yes Clostridium botulinum B1 str. Okra   8 7
No Yes Clostridium botulinum Ba4 str. 657   5 5
No Yes Clostridium botulinum A2 str. Kyoto   6 6
No Yes Clostridium botulinum A3 str. Loch Maree   8 7
No Yes Clostridium botulinum A str. Hall   6 6
No Yes Clostridium botulinum A str. ATCC 19397   6 6
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   6 5
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   5 4
No Yes Thermacetogenium phaeum DSM 12270   6 5
No Yes Thermoanaerobacter sp. X513   7 5
No Yes Carnobacterium maltaromaticum LMA28   4 4
No Yes Enterococcus mundtii QU 25   4 4
No Yes Enterococcus faecalis str. Symbioflor 1   3 3
No Yes Enterococcus faecalis D32   3 3
No Yes Enterococcus faecalis OG1RF   3 3
No Yes Enterococcus faecalis V583   3 3
No Yes Lactobacillus reuteri JCM 1112   6 5
No Yes Lactobacillus reuteri SD2112   6 5
No Yes Lactobacillus brevis KB290   6 5
No Yes Streptococcus dysgalactiae subsp. equisimilis 167   8 8
No Yes Streptococcus dysgalactiae subsp. equisimilis ATCC 12394   7 7
No Yes Streptococcus dysgalactiae subsp. equisimilis RE378   5 5
No Yes Streptococcus iniae SF1   8 7
No Yes Paenibacillus larvae subsp. larvae DSM 25430   7 5
No Yes Listeria monocytogenes EGD sequence   13 10
No Yes Listeria monocytogenes N53-1   13 10
No Yes Listeria monocytogenes La111   13 10
No Yes Listeria monocytogenes serotype 4b str. LL195   13 10
No Yes Listeria monocytogenes 07PF0776   13 10
No Yes Listeria monocytogenes M7   13 10
No Yes Listeria monocytogenes J1-220   13 10
No Yes Listeria monocytogenes J1816   13 10
No Yes Listeria monocytogenes SLCC2376   13 10
No Yes Listeria monocytogenes SLCC5850   13 10
No Yes Listeria monocytogenes ATCC 19117   13 10
No Yes Listeria monocytogenes L312   13 10
No Yes Listeria monocytogenes SLCC2479   13 10
No Yes Listeria monocytogenes SLCC7179   13 10
No Yes Listeria monocytogenes SLCC2540   13 10
No Yes Listeria monocytogenes SLCC2378   14 11
No Yes Listeria monocytogenes serotype 1/2b str. SLCC2755   13 10
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   13 10
No Yes Listeria monocytogenes serotype 7 str. SLCC2482   13 10
No Yes Listeria monocytogenes 08-5578   13 10
No Yes Listeria monocytogenes 08-5923   13 10
No Yes Listeria monocytogenes L99   13 10
No Yes Listeria monocytogenes HCC23   13 10
No Yes Listeria monocytogenes 10403S   13 10
No Yes Listeria monocytogenes J0161   13 10
No Yes Listeria monocytogenes Finland 1998   13 10
No Yes Listeria monocytogenes FSL R2-561   13 10
No Yes Listeria monocytogenes serotype 4b str. F2365   13 10
No Yes Listeria monocytogenes EGD-e   13 10
No Yes Geobacillus sp. Y4.1MC1   5 4
No Yes Bacillus megaterium QM B1551   4 4
No Yes Singulisphaera acidiphila DSM 18658   3 3
No Yes Fusobacterium nucleatum subsp. vincentii 3_1_36A2   4 4
No Yes Fusobacterium nucleatum subsp. animalis 4_8   8 7
No Yes Acidithiobacillus ferrooxidans ATCC 23270   3 3
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   20 14
No Yes Rhodospirillum rubrum ATCC 11170   6 5
No Yes Rhodopseudomonas palustris BisB18   6 5
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Aeromonas hydrophila ML09-119   4 4
No Yes Vibrio sp. EJY3   7 5
No Yes Shewanella sp. W3-18-1   5 4
No Yes Thioalkalivibrio nitratireducens DSM 14787   4 4
No Yes Thioflavicoccus mobilis 8321   3 3
No Yes Proteus mirabilis BB2000   4 4
No Yes Morganella morganii subsp. morganii KT   7 5
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   8 6
No Yes Yersinia enterocolitica subsp. palearctica Y11   8 6
No Yes Serratia marcescens FGI94   4 4
No Yes Raoultella ornithinolytica B6   9 8
No Yes Shigella sonnei 53G   10 9
No Yes Shigella flexneri 2002017   3 3
No Yes Shigella flexneri 2a str. 2457T   3 3
No Yes Shigella flexneri 2a str. 301   3 3
No Yes Shigella dysenteriae 1617   2 2
No Yes Shigella boydii Sb227   4 4
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   12 10
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   12 10
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   12 10
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   12 10
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   12 10
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   12 10
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   10 9
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   12 10
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   12 10
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   11 9
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   12 10
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   12 10
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   12 10
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   12 10
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   12 10
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   12 10
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   12 10
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   11 9
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   12 10
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   12 10
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   12 10
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   11 9
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   12 10
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   11 9
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   11 9
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   12 10
No Yes Salmonella enterica serovar Bovismorbificans genomics   12 10
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   12 10
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   12 10
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   11 9
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   12 10
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   12 10
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   12 10
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   12 10
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   12 10
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   12 10
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   12 10
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   12 10
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   10 8
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   11 9
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   11 9
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   12 10
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   12 10
No Yes Klebsiella oxytoca KCTC 1686   16 14
No Yes Klebsiella pneumoniae JM45   9 7
No Yes Klebsiella pneumoniae CG43   12 10
No Yes Klebsiella pneumoniae KCTC 2242   12 10
No Yes Klebsiella pneumoniae 342   16 14
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   11 9
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   12 10
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   12 10
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   16 14
No Yes Enterobacter aerogenes EA1509E   4 4
No Yes Escherichia coli E24377A   12 10
No Yes Escherichia coli E. coli PMV-1   4 4
No Yes Escherichia coli JJ1886   4 4
No Yes Escherichia coli LY180   4 4
No Yes Escherichia coli APEC O78   4 4
No Yes Escherichia coli O7:K1 str. CE10   8 8
No Yes Escherichia coli O104:H4 str. 2009EL-2050   4 4
No Yes Escherichia coli O104:H4 str. 2009EL-2071   4 4
No Yes Escherichia coli O104:H4 str. 2011C-3493   4 4
No Yes Escherichia coli NA114   4 4
No Yes Escherichia coli P12b   4 4
No Yes Escherichia coli str. 'clone D i2'   4 4
No Yes Escherichia coli str. 'clone D i14'   4 4
No Yes Escherichia coli UM146   8 8
No Yes Escherichia coli 042   4 4
No Yes Escherichia coli Xuzhou21   4 4
No Yes Escherichia coli IHE3034   4 4
No Yes Escherichia coli UMNK88   4 4
No Yes Escherichia coli O83:H1 str. NRG 857C   12 10
No Yes Escherichia coli ABU 83972   4 4
No Yes Escherichia coli KO11FL   4 4
No Yes Escherichia coli KO11FL   4 4
No Yes Escherichia coli LF82   12 10
No Yes Escherichia coli ED1a   8 7
No Yes Escherichia coli IAI39   8 8
No Yes Escherichia coli UMN026   11 9
No Yes Escherichia coli 55989   4 4
No Yes Escherichia coli S88   8 7
No Yes Escherichia coli IAI1   4 4
No Yes Escherichia coli W   4 4
No Yes Escherichia coli W   4 4
No Yes Escherichia coli DH1   4 4
No Yes Escherichia coli DH1   4 4
No Yes Escherichia coli ATCC 8739   4 4
No Yes Escherichia coli BL21(DE3)   4 4
No Yes Escherichia coli BL21(DE3)   4 4
No Yes Escherichia coli SMS-3-5   4 4
No Yes Escherichia coli SE15   4 4
No Yes Escherichia coli SE11   4 4
No Yes Escherichia coli APEC O1   8 7
No Yes Escherichia coli O103:H2 str. 12009   4 4
No Yes Escherichia coli UTI89   8 8
No Yes Escherichia coli 536   8 8
No Yes Escherichia coli HS   4 4
No Yes Escherichia coli ETEC H10407   4 4
No Yes Escherichia coli O55:H7 str. RM12579   4 4
No Yes Escherichia coli O55:H7 str. CB9615   4 4
No Yes Escherichia coli O26:H11 str. 11368   4 4
No Yes Escherichia coli CFT073   9 8
No Yes Escherichia coli O111:H- str. 11128   4 4
No Yes Escherichia coli O127:H6 str. E2348/69   12 10
No Yes Escherichia coli O157:H7 str. TW14359   4 4
No Yes Escherichia coli O157:H7 str. EC4115   4 4
No Yes Escherichia coli O157:H7 str. Sakai   4 4
No Yes Escherichia coli O157:H7 str. EDL933   4 4
No Yes Escherichia coli str. K-12 substr. MDS42   4 4
No Yes Escherichia coli BW2952   4 4
No Yes Escherichia coli str. K-12 substr. MG1655   4 4
No Yes Escherichia coli str. K-12 substr. W3110   4 4
No Yes Escherichia coli str. K-12 substr. DH10B   4 4
No Yes Escherichia coli B str. REL606   4 4
No Yes Enterobacter cloacae SCF1   12 10
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_Base_of_chrolophyll_max (meta-genome)   2 1
No Yes 3_Below_base_of_euphotic (meta-genome)   3 3
No Yes 4_050719Q (meta-genome)   24 21
No Yes 5_050719P (meta-genome)   7 6
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   10 10
No Yes Combined (meta-genome)   21 19
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   5 5
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   9 9
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   4 3
No Yes Dump bottom (Dump bottom) (meta-genome)   11 11
No Yes Dump top (Dump top) (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   12 10
No Yes Fungus garden combined (combined) (meta-genome)   18 15
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   30 29
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   34 30
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   19 18
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   8 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   6 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   25 22
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   16 15
No Yes Human Gut Community Subject 7 (meta-genome)   7 6
No Yes Human Gut Community Subject 8 (meta-genome)   16 14
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   11 7
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   3 3
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   21 19
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   4 3
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   12 11
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   8 8
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   4 4
No Yes NCBI 2017_08 genome   221962 188991
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   15 13
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   22 21
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   19 18
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   18 17
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   17 15
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   30 27
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   13 12
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   21 19
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   15 15
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   16 14
No Yes STRING v9.0.5 (STRING)   1224 1044
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   13 13
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   7 7
No Yes Uniprot 2018_03 genome   17215 14720
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   220 216
No Yes NCBI plasmid sequences (Plasmids)   22 18
No Yes NCBI viral sequences (Viral)   6 5
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   862 654
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   880 880
No Yes TargetDB (Targets)   78 53
No Yes The Salmonella enterica Pan-genome (meta-genome)   351 290

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