SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


TM1622-like superfamily domain assignments
in
all bacterial genomes

Network of domain occurrence in all genomes


Assignment details

(show help)

13 selected genomes have 13 significant domains in 13 proteins.


Dyadobacter fermentans DSM 18053 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|255035686|ref|YP_003086307.1|   0.0000811   21-76   TM1622-like  
 
Weak hits:
gi|255037002|ref|YP_003087623.1|   0.00693   243-288   TM1622-like  

Fervidobacterium pennivorans DSM 9078 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|383787359|ref|YP_005471928.1|   1.31e-42   34-164   TM1622-like  

Fervidobacterium nodosum Rt17-B1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|154250013|ref|YP_001410838.1|   1.96e-50   35-165   TM1622-like  

Thermosipho melanesiensis BI429 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|150021774|ref|YP_001307128.1|   2.22e-51   28-158   TM1622-like  

Thermosipho africanus TCF52B has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|217076335|ref|YP_002334051.1|   4.18e-37   28-157   TM1622-like  

Thermotoga lettingae TMO has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|157363401|ref|YP_001470168.1|   2.22e-53   25-154   TM1622-like  

Thermotoga thermarum DSM 5069 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|338730169|ref|YP_004659561.1|   2.75e-41   26-155   TM1622-like  

Thermotoga sp. RQ2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|170289075|ref|YP_001739313.1|   4.05e-57   25-154   TM1622-like  

Thermotoga naphthophila RKU-10 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|281412605|ref|YP_003346684.1|   1.02e-56   25-153   TM1622-like  

Thermotoga petrophila RKU-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|148270299|ref|YP_001244759.1|   2.88e-57   25-153   TM1622-like  

Thermotoga neapolitana DSM 4359 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|222099810|ref|YP_002534378.1|   1.96e-43   24-153   TM1622-like  

Thermotoga maritima MSB8 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|15644370|ref|NP_229422.1|   1.29e-57   25-154   TM1622-like  

Thermotoga maritima MSB8 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|15644370|ref|NP_229422.1|   1.29e-57   25-154   TM1622-like  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a TM1622-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   133 133
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Fervidobacterium pennivorans DSM 9078   1 1
No Yes Fervidobacterium nodosum Rt17-B1   1 1
No Yes Thermosipho melanesiensis BI429   1 1
No Yes Thermosipho africanus TCF52B   1 1
No Yes Thermotoga lettingae TMO   1 1
No Yes Thermotoga thermarum DSM 5069   1 1
No Yes Thermotoga sp. RQ2   1 1
No Yes Thermotoga naphthophila RKU-10   1 1
No Yes Thermotoga petrophila RKU-1   1 1
No Yes Thermotoga neapolitana DSM 4359   1 1
No Yes Thermotoga maritima MSB8   1 1
No Yes Thermotoga maritima MSB8   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   52 52
No Yes STRING v9.0.5 (STRING)   10 10
No Yes Uniprot 2018_03 genome   36 36
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   3 3
No Yes TargetDB (Targets)   2 2

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]