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STIV B116-like superfamily domain assignments
in
all bacterial genomes

Network of domain occurrence in all genomes


Assignment details

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15 selected genomes have 17 significant domains in 17 proteins.


Clostridium lentocellum DSM 5427 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|326790618|ref|YP_004308439.1|   5.89e-29   8-109   STIV B116-like  

Alkaliphilus metalliredigens QYMF has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|150389482|ref|YP_001319531.1|   7.85e-37   7-111   STIV B116-like  

Clostridium beijerinckii NCIMB 8052 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|150019172|ref|YP_001311426.1|   4.05e-36   1-105   STIV B116-like  
 
Weak hits:
gi|150015332|ref|YP_001307586.1|   0.0288   143-215   STIV B116-like  

Bacillus sp. JS has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386757104|ref|YP_006230320.1|   2.09e-33   1-107   STIV B116-like  

Bacillus atrophaeus 1942 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|311066986|ref|YP_003971909.1|   1.7e-21   1-70   STIV B116-like  

Bacillus subtilis subsp. subtilis str. 168 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|16077562|ref|NP_388376.1|   7.85e-36   1-107   STIV B116-like  

Marinitoga piezophila KA3 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|374339412|ref|YP_005096148.1|   1.16e-20   446-558   STIV B116-like  
gi|374340941|ref|YP_005097677.1|   0.0000157   22-79   STIV B116-like  
 
Weak hits:
gi|374340489|ref|YP_005097225.1|   0.0209   158-214   STIV B116-like  

Candidatus Chloracidobacterium thermophilum B has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|347756241|ref|YP_004863804.1|   2.22e-21   4-89   STIV B116-like  

Thioalkalivibrio sulfidophilus HL-EbGr7 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|220934967|ref|YP_002513866.1|   4.19e-22   4-105   STIV B116-like  

Pectobacterium wasabiae WPP163 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|261821042|ref|YP_003259148.1|   0.00000000000471   2-91   STIV B116-like  

Thermoanaerobacterium saccharolyticum JW/SL-YS485 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|390935781|ref|YP_006393323.1|   3.92e-17   3-90   STIV B116-like  
gi|397912610|ref|YP_006546274.1|   3.27e-16   1-84   STIV B116-like  

Thermoanaerobacterium thermosaccharolyticum M0795 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|433653688|ref|YP_007276630.1|   3.92e-17   3-90   STIV B116-like  

Listeria monocytogenes SLCC2540 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|405755552|ref|YP_006679016.1|   3.66e-19   4-105   STIV B116-like  

Bacillus subtilis subsp. subtilis 6051-HGW has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|470160652|ref|YP_007532427.1|   7.85e-36   1-107   STIV B116-like  

Bacillus subtilis subsp. natto BEST195 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|428277953|ref|YP_005559688.1|   1.7e-32   1-107   STIV B116-like  

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View all assignments containing a STIV B116-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   697 697
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Clostridium beijerinckii NCIMB 8052   1 1
No Yes Bacillus sp. JS   1 1
No Yes Bacillus atrophaeus 1942   1 1
No Yes Bacillus subtilis subsp. subtilis str. 168   1 1
No Yes Marinitoga piezophila KA3   2 2
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Caldivirga maquilingensis IC-167   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   2 2
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   1 1
No Yes Listeria monocytogenes SLCC2540   1 1
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   1 1
No Yes Bacillus subtilis subsp. natto BEST195   1 1
No Yes Sulfolobus islandicus M.14.25   1 1
No Yes 1_050719N (meta-genome)   5 5
No Yes 2_050719S (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Crater Hills (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   10 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   12 12
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes NCBI 2017_08 genome   305 305
No Yes Nymph Lake Bulk Water (meta-genome)   1 1
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   7 7
No Yes Uniprot 2018_03 genome   194 194
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes NCBI plasmid sequences (Plasmids)   3 3
No Yes NCBI viral sequences (Viral)   16 16
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   8 8
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   16 16
No Yes TargetDB (Targets)   1 1
No Yes UniProt viral sequences (Viral)   14 14

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