SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


XisI-like superfamily domain assignments
in
Bifidobacterium adolescentis ATCC 15703

Network of domain occurrence in all genomes



No domain assignments for these genomes.


Add assignments from groups of genomes

View all assignments containing a XisI-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   3924 3924
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechococcus sp. PCC 7502   2 2
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Microcoleus sp. PCC 7113   9 9
No Yes Trichodesmium erythraeum IMS101   2 2
No Yes Cyanothece sp. PCC 8802   4 4
No Yes Gloeocapsa sp. PCC 7428   2 2
No Yes Halothece sp. PCC 7418   3 3
No Yes Microcystis aeruginosa NIES-843   10 10
No Yes Rivularia sp. PCC 7116   3 3
No Yes Calothrix sp. PCC 7507   17 17
No Yes Anabaena variabilis ATCC 29413   5 5
No Yes 'Nostoc azollae' 0708   3 3
No Yes Nostoc sp. PCC 7107   5 5
No Yes Nostoc punctiforme PCC 73102   10 10
No Yes Nostoc sp. PCC 7120   6 6
No Yes Nostoc sp. PCC 7524   5 5
No Yes Anabaena sp. 90   14 14
No Yes Herpetosiphon aurantiacus DSM 785   2 2
No Yes Haliscomenobacter hydrossis DSM 1100   13 13
No Yes Fibrella aestuarina   1 1
No Yes Spirosoma linguale DSM 74   2 2
No Yes Runella slithyformis DSM 19594   2 2
No Yes Chroococcidiopsis thermalis PCC 7203   5 5
No Yes Dactylococcopsis salina PCC 8305   6 6
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Crinalium epipsammum PCC 9333   6 6
No Yes Oscillatoria nigro-viridis PCC 7112   16 16
No Yes Oscillatoria acuminata PCC 6304   3 3
No Yes Arthrospira platensis NIES-39   5 5
No Yes Cyanothece sp. PCC 7822   5 5
No Yes Cyanothece sp. PCC 7425   2 2
No Yes Cyanothece sp. PCC 7424   4 4
No Yes Cyanothece sp. ATCC 51142   5 5
No Yes Cyanothece sp. PCC 8801   4 4
No Yes Cyanobacterium aponinum PCC 10605   2 2
No Yes Cyanobacterium stanieri PCC 7202   3 3
No Yes Calothrix parietina Calothrix sp. PCC 6303   9 9
No Yes Cylindrospermum stagnale PCC 7417   6 6
No Yes Anabaena cylindrica PCC 7122   8 8
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes NCBI 2017_08 genome   1520 1519
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   20 20
No Yes STRING v9.0.5 (STRING)   56 56
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   1758 1757
No Yes NCBI plasmid sequences (Plasmids)   8 8
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   7 7
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   21 21
No Yes TargetDB (Targets)   10 10

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]