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CofE-like superfamily domain assignments
in
Brachybacterium faecium DSM 4810

Assignment details

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Brachybacterium faecium DSM 4810 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|257068228|ref|YP_003154483.1|   0.00000000000157   703-932   CofE-like  
gi|257069222|ref|YP_003155477.1|   2.22e-55   32-261   CofE-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   22407 22407
No Yes Physcomitrella patens   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Cyanophora paradoxa   1 1
No Yes Acholeplasma laidlawii PG-8A   1 1
No Yes Thermobaculum terrenum ATCC BAA-798   1 1
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Synechococcus sp. CC9311   1 1
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Prochlorococcus marinus str. MIT 9515   1 1
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Geitlerinema sp. PCC 7407   1 1
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Rubrobacter xylanophilus DSM 9941   1 1
No Yes Ilumatobacter coccineus   1 1
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Acidothermus cellulolyticus 11B   1 1
No Yes Modestobacter marinus   1 1
No Yes Blastococcus saxobsidens DD2   1 1
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Kineococcus radiotolerans SRS30216   1 1
No Yes Catenulispora acidiphila DSM 44928   2 2
No Yes Frankia symbiont of Datisca glomerata   1 1
No Yes Frankia sp. EAN1pec   1 1
No Yes Frankia alni ACN14a   1 1
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 2
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Kribbella flavida DSM 17836   1 1
No Yes Nocardioides sp. JS614   1 1
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Salinispora arenicola CNS-205   3 3
No Yes Salinispora tropica CNB-440   4 4
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Actinoplanes sp. N902-109   1 1
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Actinoplanes missouriensis 431   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Gordonia sp. KTR9   1 1
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Rhodococcus equi 103S   1 1
No Yes Rhodococcus opacus B4   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia cyriacigeorgica GUH-2   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium massiliense str. GO 06   1 1
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Mycobacterium intracellulare ATCC 13950   1 1
No Yes Mycobacterium avium 104   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium canettii CIPT 140010059   1 1
No Yes Mycobacterium africanum GM041182   1 1
No Yes Mycobacterium tuberculosis KZN 1435   1 1
No Yes Mycobacterium tuberculosis   1 1
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   1 1
No Yes Mycobacterium rhodesiae NBB3   1 1
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium leprae Br4923   1 1
No Yes Sanguibacter keddieii DSM 10542   1 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Microbacterium testaceum StLB037   2 2
No Yes Jonesia denitrificans DSM 20603   1 1
No Yes Intrasporangium calvum DSM 43043   2 2
No Yes Brachybacterium faecium DSM 4810   2 2
No Yes Isoptericola variabilis 225   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Cellulomonas flavigena DSM 20109   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Renibacterium salmoninarum ATCC 33209   1 1
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   2 2
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Sphaerobacter thermophilus DSM 20745   1 1
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Chloroflexus sp. MS-G   1 1
No Yes Chloroflexus sp. Y-400-fl   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   1 1
No Yes Anaerococcus prevotii DSM 20548   1 1
No Yes Veillonella parvula DSM 2008   1 1
No Yes Megasphaera elsdenii DSM 20460   1 1
No Yes Acidaminococcus intestini RyC-MR95   1 1
No Yes Acidaminococcus fermentans DSM 20731   1 1
No Yes Megamonas hypermegale   1 1
No Yes Selenomonas sputigena ATCC 35185   1 1
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   1 1
No Yes Erysipelothrix rhusiopathiae str. Fujisawa   2 2
No Yes Natranaerobius thermophilus JW/NM-WN-LF   5 5
No Yes Clostridiales genomosp. BVAB3 str. UPII9-5   1 1
No Yes Thermaerobacter marianensis DSM 12885   2 2
No Yes Sulfobacillus acidophilus DSM 10332   1 1
No Yes Pelotomaculum thermopropionicum SI   2 2
No Yes Desulfitobacterium hafniense Y51   1 1
No Yes Desulfitobacterium dehalogenans ATCC 51507   1 1
No Yes Desulfotomaculum kuznetsovii DSM 6115   1 1
No Yes Eubacterium limosum KIST612   1 1
No Yes Clostridium difficile 630   1 1
No Yes Filifactor alocis ATCC 35896   1 1
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Clostridium phytofermentans ISDg   1 1
No Yes Clostridium lentocellum DSM 5427   2 2
No Yes Alkaliphilus oremlandii OhILAs   2 2
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Clostridium tetani E88   2 2
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Thermoanaerobacterium xylanolyticum LX-11   1 1
No Yes Thermoanaerobacterium thermosaccharolyticum DSM 571   1 1
No Yes Thermodesulfobium narugense DSM 14796   1 1
No Yes Coprothermobacter proteolyticus DSM 5265   1 1
No Yes Tepidanaerobacter acetatoxydans Re1   1 1
No Yes Thermoanaerobacter tengcongensis MB4   2 2
No Yes Moorella thermoacetica ATCC 39073   1 1
No Yes Ammonifex degensii KC4   1 1
No Yes Halanaerobium hydrogeniformans   1 1
No Yes Halanaerobium praevalens DSM 2228   1 1
No Yes Carnobacterium sp. 17-4   1 1
No Yes Carnobacterium sp. WN1359   1 1
No Yes Aerococcus urinae ACS-120-V-Col10a   1 1
No Yes Lactobacillus crispatus ST1   1 1
No Yes Lactobacillus amylovorus GRL1118   1 1
No Yes Streptococcus pyogenes str. Manfredo   1 1
No Yes Solibacillus silvestris StLB046   1 1
No Yes Lysinibacillus sphaericus C3-41   1 1
No Yes Candidatus Cloacamonas acidaminovorans   1 1
No Yes Chlamydia muridarum Nigg   1 1
No Yes Chlamydophila pneumoniae TW-183   1 1
No Yes Chlamydophila caviae GPIC   1 1
No Yes Chlamydophila felis Fe/C-56   1 1
No Yes Chlamydophila abortus S26/3   1 1
No Yes Chlamydia psittaci 01DC11   1 1
No Yes Chlamydia trachomatis B/Jali20/OT   1 1
No Yes Fretibacterium fastidiosum   1 1
No Yes Anaerobaculum mobile DSM 13181   1 1
No Yes Treponema denticola ATCC 35405   1 1
No Yes Kosmotoga olearia TBF 19.5.1   1 1
No Yes Elusimicrobium minutum Pei191   1 1
No Yes Caldisericum exile AZM16c01   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Burkholderia rhizoxinica HKI 454   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Sphingobium chlorophenolicum L-1   2 2
No Yes Sphingomonas sp. MM-1   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Pseudovibrio sp. FO-BEG1   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Wolbachia sp. wRi   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Colwellia psychrerythraea 34H   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Candidatus Caldiarchaeum subterraneum   1 1
No Yes Cenarchaeum symbiosum A   2 2
No Yes Candidatus Nitrosopumilus sp. AR2   2 2
No Yes Nitrosopumilus maritimus SCM1   2 2
No Yes Candidatus Korarchaeum cryptofilum OPF8   1 1
No Yes Acidilobus saccharovorans 345-15   1 1
No Yes halophilic archaeon DL31   1 1
No Yes Methanocella arvoryzae MRE50   1 1
No Yes Methanocella conradii HZ254   1 1
No Yes Methanocella paludicola SANAE   2 2
No Yes Methanosaeta harundinacea 6Ac   3 3
No Yes Methanosaeta thermophila PT   2 2
No Yes Methanosaeta concilii GP6   2 2
No Yes Methanosalsum zhilinae DSM 4017   2 2
No Yes Methanohalobium evestigatum Z-7303   2 2
No Yes Methanococcoides burtonii DSM 6242   2 2
No Yes Methanosarcina acetivorans C2A   2 2
No Yes Methanosarcina mazei Go1   2 2
No Yes Methanosarcina barkeri str. Fusaro   2 2
No Yes Methanohalophilus mahii DSM 5219   2 2
No Yes Methanosphaerula palustris E1-9c   2 2
No Yes Methanoregula boonei 6A8   2 2
No Yes Methanospirillum hungatei JF-1   2 2
No Yes Methanocorpusculum labreanum Z   2 2
No Yes Methanoplanus petrolearius DSM 11571   2 2
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Methanoculleus marisnigri JR1   2 2
No Yes Methanopyrus kandleri AV19   2 2
No Yes Ferroglobus placidus DSM 10642   1 1
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Archaeoglobus veneficus SNP6   1 1
No Yes Archaeoglobus fulgidus DSM 4304   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Natrinema sp. J7-2   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Halorubrum lacusprofundi ATCC 49239   1 1
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Halomicrobium mukohataei DSM 12286   1 1
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Natronomonas pharaonis DSM 2160   1 1
No Yes Haloarcula hispanica ATCC 33960   2 2
No Yes Haloarcula marismortui ATCC 43049   1 1
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Halobacterium salinarum R1   1 1
No Yes Halobacterium sp. NRC-1   1 1
No Yes Methanotorris igneus Kol 5   2 2
No Yes Methanocaldococcus sp. FS406-22   2 2
No Yes Methanocaldococcus fervens AG86   2 2
No Yes Methanocaldococcus vulcanius M7   2 2
No Yes methanocaldococcus infernus ME   2 2
No Yes Methanocaldococcus jannaschii DSM 2661   2 2
No Yes Methanothermococcus okinawensis IH1   2 2
No Yes Methanococcus aeolicus Nankai-3   2 2
No Yes Methanococcus maripaludis C5   2 2
No Yes Methanococcus voltae A3   2 2
No Yes Methanococcus vannielii SB   2 2
No Yes Methanothermus fervidus DSM 2088   2 2
No Yes Methanothermobacter marburgensis str. Marburg   2 2
No Yes Methanothermobacter thermautotrophicus str. Delta H   2 2
No Yes Methanosphaera stadtmanae DSM 3091   2 2
No Yes Methanobrevibacter sp. AbM4   2 2
No Yes Methanobrevibacter ruminantium M1   3 3
No Yes Methanobrevibacter smithii ATCC 35061   2 2
No Yes Complete genome sequence of Methanobacterium sp. Mb1   2 2
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Synechococcus sp. CC9902   1 1
No Yes Synechococcus sp. RCC307   1 1
No Yes Synechococcus sp. CC9605   1 1
No Yes Synechococcus sp. WH 8102   1 1
No Yes Synechococcus sp. WH 7803   1 1
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Prochlorococcus marinus str. NATL1A   1 1
No Yes Prochlorococcus marinus str. MIT 9301   1 1
No Yes Prochlorococcus marinus str. AS9601   1 1
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   1 1
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   1 1
No Yes Prochlorococcus marinus str. MIT 9215   1 1
No Yes Prochlorococcus marinus str. MIT 9211   1 1
No Yes Prochlorococcus marinus str. MIT 9313   1 1
No Yes Prochlorococcus marinus str. MIT 9312   1 1
No Yes Prochlorococcus marinus str. MIT 9303   1 1
No Yes Prochlorococcus marinus str. NATL2A   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Frankia sp. EuI1c   1 1
No Yes Frankia sp. CcI3   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces collinus Tu 365   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 2
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Rhodococcus pyridinivorans SB3094   1 1
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium sp. MOTT36Y   1 1
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium abscessus subsp. bolletii 50594   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium yongonense 05-1390   1 1
No Yes Mycobacterium intracellulare MOTT-64   1 1
No Yes Mycobacterium indicus pranii MTCC 9506   1 1
No Yes Mycobacterium intracellulare MOTT-02   1 1
No Yes Mycobacterium avium subsp. paratuberculosis MAP4   1 1
No Yes Mycobacterium avium subsp. paratuberculosis K-10   1 1
No Yes Mycobacterium canettii CIPT 140070017   1 1
No Yes Mycobacterium canettii CIPT 140060008   1 1
No Yes Mycobacterium canettii CIPT 140070008   1 1
No Yes Mycobacterium canettii CIPT 140070010   1 1
No Yes Mycobacterium tuberculosis EAI5/NITR206   1 1
No Yes Mycobacterium tuberculosis EAI5   1 1
No Yes Mycobacterium tuberculosis CAS/NITR204   1 1
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   1 1
No Yes Mycobacterium tuberculosis UT205   1 1
No Yes Mycobacterium tuberculosis RGTB423   1 1
No Yes Mycobacterium tuberculosis CTRI-2   1 1
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   1 1
No Yes Mycobacterium tuberculosis KZN 605   1 1
No Yes Mycobacterium tuberculosis KZN 4207   1 1
No Yes Mycobacterium tuberculosis CCDC5180   1 1
No Yes Mycobacterium tuberculosis CCDC5079   1 1
No Yes Mycobacterium tuberculosis CCDC5079   1 1
No Yes Mycobacterium tuberculosis H37Ra   1 1
No Yes Mycobacterium tuberculosis str. Haarlem   1 1
No Yes Mycobacterium tuberculosis F11   1 1
No Yes Mycobacterium tuberculosis H37Rv   1 1
No Yes Mycobacterium tuberculosis CDC1551   1 1
No Yes Mycobacterium bovis AF2122/97   1 1
No Yes Mycobacterium bovis BCG str. Korea 1168P   1 1
No Yes Mycobacterium bovis BCG str. Mexico   1 1
No Yes Mycobacterium bovis BCG str. Tokyo 172   1 1
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium leprae TN   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Erysipelothrix rhusiopathiae SY1027   2 2
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   1 1
No Yes Sulfobacillus acidophilus TPY   1 1
No Yes Clostridium acidurici 9a   2 2
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   1 1
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Clostridium difficile BI1   1 1
No Yes Clostridium difficile R20291   1 1
No Yes Clostridium difficile CD196   1 1
No Yes Clostridium tetani genome 12124569   2 2
No Yes Clostridium botulinum H04402 065   1 1
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum E3 str. Alaska E43   1 1
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   1 1
No Yes Thermacetogenium phaeum DSM 12270   2 2
No Yes Lactobacillus helveticus H10   1 1
No Yes Streptococcus pyogenes HSC5   1 1
No Yes Streptococcus pyogenes A20   1 1
No Yes Streptococcus pyogenes MGAS1882   1 1
No Yes Streptococcus pyogenes MGAS15252   1 1
No Yes Streptococcus pyogenes Alab49   1 1
No Yes Streptococcus pyogenes MGAS10750   1 1
No Yes Streptococcus pyogenes MGAS10270   1 1
No Yes Streptococcus pyogenes MGAS2096   1 1
No Yes Streptococcus pyogenes MGAS9429   1 1
No Yes Streptococcus pyogenes MGAS6180   1 1
No Yes Streptococcus pyogenes NZ131   1 1
No Yes Streptococcus pyogenes MGAS8232   1 1
No Yes Streptococcus pyogenes MGAS10394   1 1
No Yes Streptococcus pyogenes MGAS315   1 1
No Yes Streptococcus pyogenes SSI-1   1 1
No Yes Streptococcus pyogenes M1 476   1 1
No Yes Streptococcus pyogenes MGAS5005   1 1
No Yes Streptococcus pyogenes M1 GAS   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Chlamydophila pneumoniae LPCoLN   1 1
No Yes Chlamydophila pneumoniae J138   1 1
No Yes Chlamydophila pneumoniae CWL029   1 1
No Yes Chlamydophila pneumoniae AR39   1 1
No Yes Chlamydia psittaci 01DC12   1 1
No Yes Chlamydia psittaci WC   1 1
No Yes Chlamydia psittaci M56   1 1
No Yes Chlamydia psittaci WS/RT/E30   1 1
No Yes Chlamydia psittaci VS225   1 1
No Yes Chlamydia psittaci MN   1 1
No Yes Chlamydia psittaci GR9   1 1
No Yes Chlamydia psittaci 84/55   1 1
No Yes Chlamydia psittaci 08DC60   1 1
No Yes Chlamydia psittaci 02DC15   1 1
No Yes Chlamydia psittaci C19/98   1 1
No Yes Chlamydia psittaci NJ1   1 1
No Yes Chlamydia psittaci CP3   1 1
No Yes Chlamydophila psittaci RD1   1 1
No Yes Chlamydia psittaci Mat116   1 1
No Yes Chlamydophila psittaci 6BC   1 1
No Yes Chlamydophila psittaci 6BC   1 1
No Yes Chlamydia trachomatis C/TW-3   1 1
No Yes Chlamydia trachomatis L2/434/Bu(f)   1 1
No Yes Chlamydia trachomatis L2/434/Bu(i)   1 1
No Yes Chlamydia trachomatis IU888   1 1
No Yes Chlamydia trachomatis IU824   1 1
No Yes Chlamydia trachomatis L2b/Canada2   1 1
No Yes Chlamydia trachomatis L2b/Canada1   1 1
No Yes Chlamydia trachomatis L3/404/LN   1 1
No Yes Chlamydia trachomatis L2b/Ams5   1 1
No Yes Chlamydia trachomatis L2b/Ams4   1 1
No Yes Chlamydia trachomatis L2b/Ams3   1 1
No Yes Chlamydia trachomatis L2b/Ams2   1 1
No Yes Chlamydia trachomatis L2b/Ams1   1 1
No Yes Chlamydia trachomatis L2b/795   1 1
No Yes Chlamydia trachomatis L2b/CV204   1 1
No Yes Chlamydia trachomatis L2b/LST   1 1
No Yes Chlamydia trachomatis L2b/UCH-2   1 1
No Yes Chlamydia trachomatis L2b/8200/07   1 1
No Yes Chlamydia trachomatis L2/25667R   1 1
No Yes Chlamydia trachomatis L1/224   1 1
No Yes Chlamydia trachomatis L1/115   1 1
No Yes Chlamydia trachomatis L1/440/LN   1 1
No Yes Chlamydia trachomatis K/SotonK1   1 1
No Yes Chlamydia trachomatis Ia/SotonIa3   1 1
No Yes Chlamydia trachomatis Ia/SotonIa1   1 1
No Yes Chlamydia trachomatis G/SotonG1   1 1
No Yes Chlamydia trachomatis F/SotonF3   1 1
No Yes Chlamydia trachomatis F/SW5   1 1
No Yes Chlamydia trachomatis F/SW4   1 1
No Yes Chlamydia trachomatis E/SotonE8   1 1
No Yes Chlamydia trachomatis E/SotonE4   1 1
No Yes Chlamydia trachomatis E/SW3   1 1
No Yes Chlamydia trachomatis D/SotonD6   1 1
No Yes Chlamydia trachomatis D/SotonD5   1 1
No Yes Chlamydia trachomatis D/SotonD1   1 1
No Yes Chlamydia trachomatis A/5291   1 1
No Yes Chlamydia trachomatis A/363   1 1
No Yes Chlamydia trachomatis RC-J/971   1 1
No Yes Chlamydia trachomatis RC-L2/55   1 1
No Yes Chlamydia trachomatis J/6276tet1   1 1
No Yes Chlamydia trachomatis RC-J/966   1 1
No Yes Chlamydia trachomatis RC-J(s)/122   1 1
No Yes Chlamydia trachomatis RC-F(s)/342   1 1
No Yes Chlamydia trachomatis RC-L2(s)/3   1 1
No Yes Chlamydia trachomatis RC-J/953   1 1
No Yes Chlamydia trachomatis RC-J943   1 1
No Yes Chlamydia trachomatis RC-Fs852   1 1
No Yes Chlamydia trachomatis RC-L2s46   1 1
No Yes Chlamydia trachomatis RC-F69   1 1
No Yes Chlamydia trachomatis L2c   1 1
No Yes Chlamydia trachomatis D-LC   1 1
No Yes Chlamydia trachomatis D-EC   1 1
No Yes Chlamydia trachomatis G/9301   1 1
No Yes Chlamydia trachomatis G/11074   1 1
No Yes Chlamydia trachomatis G/11222   1 1
No Yes Chlamydia trachomatis G/9768   1 1
No Yes Chlamydia trachomatis E/150   1 1
No Yes Chlamydia trachomatis E/11023   1 1
No Yes Chlamydia trachomatis B/TZ1A828/OT   1 1
No Yes Chlamydia trachomatis Sweden2   1 1
No Yes Chlamydia trachomatis E/Bour   1 1
No Yes Chlamydia trachomatis A2497   1 1
No Yes Chlamydia trachomatis A2497   1 1
No Yes Chlamydia trachomatis L2b/UCH-1/proctitis   1 1
No Yes Chlamydia trachomatis 434/Bu   1 1
No Yes Chlamydia trachomatis A/HAR-13   1 1
No Yes Chlamydia trachomatis D/UW-3/CX   1 1
No Yes Treponema pedis str. T A4   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Wolbachia endosymbiont of Drosophila melanogaster   1 1
No Yes Wolbachia endosymbiont of Onchocerca ochengi str. Adamawa_Cameroon   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wHa   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   2 2
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   2 2
No Yes Methanomethylovorans hollandica DSM 15978   2 2
No Yes Methanolobus psychrophilus R15   2 2
No Yes Methanosarcina mazei Tuc01   2 2
No Yes Methanoregula formicica Methanoregula formicicum SMSP   2 2
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Halovivax ruber XH-70   2 1
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Natronococcus occultus SP4   1 1
No Yes Natronobacterium gregoryi SP2   1 1
No Yes Haloquadratum walsbyi C23   1 1
No Yes Halorhabdus tiamatea SARL4B   1 1
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes Haloarcula hispanica N601   2 2
No Yes Methanococcus maripaludis X1   2 2
No Yes Methanococcus maripaludis C6   2 2
No Yes Methanococcus maripaludis C7   2 2
No Yes Methanococcus maripaludis S2   2 2
No Yes Methanobacterium sp. SWAN-1   2 2
No Yes Acholeplasma laidlawii PG-8A (duplicate)   1 1
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   1 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   5 5
No Yes 2_Base_of_chrolophyll_max (meta-genome)   2 2
No Yes 3_050719R (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   10 10
No Yes 4_Deep_abyss (meta-genome)   3 3
No Yes 5_050719P (meta-genome)   8 8
No Yes 5_Below_upper_mesopelagic (meta-genome)   2 2
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes 7_Oxygen_minimum_layer (meta-genome)   2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   2 2
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   23 23
No Yes Dump top (Dump top) (meta-genome)   31 31
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   6 6
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   16 16
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   7 7
No Yes Human Gut Community Subject 7 (meta-genome)   3 3
No Yes Human Gut Community Subject 8 (meta-genome)   2 2
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   8 8
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   7 7
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   13 13
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   12 12
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   7 7
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   6 6
No Yes NCBI 2017_08 genome   14643 14642
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   16 16
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   9 9
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   9 9
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   4 4
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   10 10
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   23 23
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   51 51
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   21 21
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   24 24
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   18 18
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   26 26
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   7 7
No Yes STRING v9.0.5 (STRING)   235 235
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   4 4
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   10 10
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   5461 5458
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   24 24
No Yes Global Ocean Sampling Expedition (GOS)   536 536
No Yes NCBI plasmid sequences (Plasmids)   7 7
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   20 20
No Yes TargetDB (Targets)   15 15

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