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E2F-DP heterodimerization region superfamily domain assignments
in
Pseudoalteromonas haloplanktis TAC125


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Select to display   Genome       Domains   Proteins
No Yes ALL   13850 13850
No Yes Homo sapiens 76_38 Human 30 30
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 9 9
No Yes Gorilla gorilla 76_3.1 Western gorilla 17 17
No Yes Pongo abelii 76_2 Sumatran orangutan 10 10
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 9 9
No Yes Papio anubis 76 Olive baboon 12 12
No Yes Macaca mulatta 76_1 Rhesus monkey 17 17
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 25 25
No Yes Otolemur garnettii 76_3 Small-eared galago 10 10
No Yes Microcebus murinus 76_1 Gray mouse lemur 8 8
No Yes Rattus norvegicus 76_5.0 Norway rat 8 8
No Yes Mus musculus 76_38 House mouse 19 19
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 7 7
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 9 9
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 13 11
No Yes Cavia porcellus 76_3 Domestic guinea pig 8 8
No Yes Oryctolagus cuniculus 76_2 Rabbit 11 11
No Yes Ochotona princeps 76 American pika 8 8
No Yes Tupaia belangeri 76 Northern tree shrew 6 6
No Yes Sus scrofa 76_10.2 Pig 7 7
No Yes Bos taurus 76_3.1 Cattle 8 8
No Yes Ovis aries 76_3.1 Sheep 8 8
No Yes Vicugna pacos 76_1 Alpaca 7 7
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 9 9
No Yes Mustela putorius furo 76_1.0 Domestic ferret 8 8
No Yes Ailuropoda melanoleuca 76_1 Giant panda 9 9
No Yes Canis familiaris 76_3.1 Dog 10 10
No Yes Felis catus 76_6.2 Domestic cat 8 8
No Yes Equus caballus 76_2 Horse 8 8
No Yes Myotis lucifugus 76_2.0 Little brown bat 9 9
No Yes Pteropus vampyrus 76_1 Large flying fox 9 9
No Yes Sorex araneus 76_1 European shrew 5 5
No Yes Erinaceus europaeus 76 Western European hedgehog 7 7
No Yes Procavia capensis 76_1 Cape rock hyrax 9 9
No Yes Loxodonta africana 76_3 African savanna elephant 13 13
No Yes Echinops telfairi 76 Small Madagascar hedgehog 10 10
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 13 13
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 6 6
No Yes Macropus eugenii 76_1.0 Tammar wallaby 10 10
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 7 7
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 10 10
No Yes Ornithorhynchus anatinus 76_5 Platypus 9 9
No Yes Saccoglossus kowalevskii v3.0   5 5
No Yes Petromyzon marinus 76_7.0 Sea lamprey 4 4
No Yes Meleagris gallopavo 76_2 Turkey 9 9
No Yes Gallus gallus 76_4 Chicken 9 9
No Yes Anas platyrhynchos 76_1.0 Mallard 7 7
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 7 7
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 8 8
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 9 9
No Yes Anolis carolinensis 76_2.0 Green anole 9 9
No Yes Xenopus laevis African clawed frog 15 15
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 6 6
No Yes Latimeria chalumnae 76_1 Coelacanth 9 9
No Yes Lepisosteus oculatus 76 Spotted gar 8 8
No Yes Gadus morhua 76_1 Atlantic cod 8 8
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 13 13
No Yes Takifugu rubripes 76_4 Torafugu 32 32
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 8 8
No Yes Oryzias latipes 76_1 Japanese medaka 8 8
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 9 9
No Yes Poecilia formosa 76 Amazon molly 9 9
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 12 12
No Yes Astyanax mexicanus 76 Mexican tetra 10 10
No Yes Danio rerio 76_9 Zebrafish 19 19
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 76 Vase tunicate 3 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 4 4
No Yes Adineta vaga   4 4
No Yes Octopus bimaculoides 280   7 7
No Yes Crassostrea gigas 22 Pacific oyster 4 4
No Yes Lottia gigantea Owl limpet 3 3
No Yes Helobdella robusta   2 2
No Yes Capitella sp. I   3 3
No Yes Danaus plexippus OGS1.0 Monarch butterfly 4 4
No Yes Heliconius melpomene Postman butterfly 2 2
No Yes Bombyx mori Domestic silkworm 2 2
No Yes Nasonia vitripennis Jewel wasp 2 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 12 12
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 3 3
No Yes Linepithema humile v1.1 Argentine ant 3 3
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 3 3
No Yes Solenopsis invicta v.2.2.3 Red fire ant 3 3
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 3 3
No Yes Atta cephalotes v1.1   3 3
No Yes Camponotus floridanus v3.3 Florida carpenter ant 3 3
No Yes Lucilia cuprina Australian sheep blowfly 3 3
No Yes Drosophila grimshawi 1.3   3 3
No Yes Drosophila willistoni 1.3   3 3
No Yes Drosophila pseudoobscura 2.13   3 3
No Yes Drosophila persimilis 1.3   3 3
No Yes Drosophila suzukii   3 3
No Yes Drosophila yakuba 1.3   3 3
No Yes Drosophila simulans 1.3   3 3
No Yes Drosophila sechellia 1.3   3 3
No Yes Drosophila melanogaster 76_5 Fruit fly 7 7
No Yes Drosophila erecta 1.3   3 3
No Yes Drosophila ananassae 1.3   3 3
No Yes Drosophila virilis 1.2   3 3
No Yes Drosophila mojavensis 1.3   3 3
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 3 3
No Yes Culex pipiens quinquefasciatus Southern house mosquito 4 4
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 3 3
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 2
No Yes Acyrthosiphon pisum Pea aphid 4 4
No Yes Rhodnius prolixus 22   2 2
No Yes Daphnia pulex Common water flea 4 4
No Yes Strigamia maritima 22   2 2
No Yes Sarcoptes scabiei   3 3
No Yes Tetranychus urticae Two-spotted spider mite 7 7
No Yes Ixodes scapularis (Preliminary) Black-legged tick 3 3
No Yes Pristionchus pacificus   3 3
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   3 3
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 7 7
No Yes Caenorhabditis japonica   3 3
No Yes Caenorhabditis brenneri   3 3
No Yes Caenorhabditis remanei   3 3
No Yes Caenorhabditis elegans 76_235 Roundworm 7 7
No Yes Caenorhabditis briggsae 2   4 4
No Yes Trichinella spiralis 22   2 2
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   3 2
No Yes Echinococcus granulosus   3 2
No Yes Taenia solium Pork tapeworm 3 2
No Yes Schistosoma mansoni   3 2
No Yes Mnemiopsis leidyi Sea walnut 3 3
No Yes Thelohanellus kitauei   2 2
No Yes Acropora digitifera v1.0   3 3
No Yes Nematostella vectensis 1.0 Starlet sea anemone 8 8
No Yes Hydra vulgaris   3 3
No Yes Amphimedon queenslandica   3 3
No Yes Trichoplax adhaerens   3 3
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   3 3
No Yes Sphaeroforma arctica JP610   4 4
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Mortierella verticillata NRRL 6337   1 1
No Yes Rhizopus oryzae RA 99-880   2 2
No Yes Mucor circinelloides   1 1
No Yes Rhizomucor miehei CAU432   2 2
No Yes Spizellomyces punctatus DAOM BR117   2 2
No Yes Dictyostelium discoideum   2 2
No Yes Dictyostelium purpureum   2 2
No Yes Selaginella moellendorffii   6 6
No Yes Pinus taeda Loblolly pine 6 6
No Yes Picea abies Norway spruce 5 5
No Yes Eucalyptus grandis v201 Rose gum 6 6
No Yes Theobroma cacao B97-61/B2 v1 Cacao 4 4
No Yes Gossypium raimondii v221   31 31
No Yes Citrus clementina v165   8 8
No Yes Citrus sinensis v154 Sweet orange 11 11
No Yes Thellungiella halophila v173   6 6
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 10 10
No Yes Capsella rubella v183   5 5
No Yes Arabidopsis lyrata Lyrate rockcress 5 5
No Yes Arabidopsis thaliana 10 Thale cress 12 12
No Yes Carica papaya Papaya 6 6
No Yes Medicago truncatula Barrel medic 6 6
No Yes Phaseolus vulgaris v186 French bean 6 6
No Yes Glycine max v109 Soybean 18 18
No Yes Cucumis sativus v122 Cucumber 10 10
No Yes Fragaria vesca Wild strawberry 5 5
No Yes Malus domestica v196 Apple 10 10
No Yes Prunus persica v139 Peach 5 5
No Yes Linum usitatissimum v200 Flax 10 10
No Yes Manihot esculenta v147 Cassava 8 8
No Yes Populus trichocarpa v156 Black cottonwood 7 7
No Yes Vitis vinifera Wine grape 5 5
No Yes Mimulus guttatus v140 Spotted monkey flower 5 5
No Yes Solanum lycopersicum v.2.3 Tomato 7 6
No Yes Solanum tuberosum Potato 19 19
No Yes Actinidia chinensis Hongyang   6 6
No Yes Aquilegia coerulea v195   7 7
No Yes Triticum urartu 22   6 6
No Yes Triticum aestivum 22 Bread wheat 21 21
No Yes Aegilops tauschii 22   5 5
No Yes Brachypodium distachyon Stiff brome 7 7
No Yes Oryza barthii 22 African wild rice 7 7
No Yes Oryza meridionalis 22   13 13
No Yes Oryza glumaepatula 22   9 9
No Yes Oryza glaberrima African rice 6 6
No Yes Oryza punctata 22   18 18
No Yes Oryza nivara 22   10 10
No Yes Oryza brachyantha 22 Malo sina 5 5
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 10 10
No Yes Oryza sativa v193 Rice 8 8
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 13 12
No Yes Panicum virgatum v202 Switchgrass 14 14
No Yes Setaria italica v164 Foxtail millet 8 8
No Yes Zea mays subsp. mays Maize 10 10
No Yes Zea mays v181 Maize 10 10
No Yes Sorghum bicolor Sorghum 9 9
No Yes Musa balbisiana Balbis banana 11 9
No Yes Musa acuminata 22 Wild Malaysian banana 10 10
No Yes Amborella trichopoda 22   4 4
No Yes Physcomitrella patens   7 7
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Chlorella vulgaris   2 2
No Yes Volvox carteri f. nagariensis   2 2
No Yes Volvox carteri v199   4 4
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus lucimarinus CCE9901   2 2
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   3 2
No Yes Micromonas sp. RCC299   2 2
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Cyanidioschyzon merolae strain 10D 22   5 4
No Yes Cyanidioschyzon merolae   5 4
No Yes Porphyridium purpureum 02_2012   2 2
No Yes Thecamonas trahens ATCC 50062   2 2
No Yes Bigelowiella natans CCMP2755 22   3 3
No Yes Ectocarpus siliculosus   3 2
No Yes Aureococcus anophagefferens   2 2
No Yes Albugo laibachii 22   2 2
No Yes Pythium iwayamai DAOM BR242034 22   2 2
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   2 2
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 2 2
No Yes Phytophthora sojae 1.1   2 2
No Yes Phytophthora infestans T30-4   2 2
No Yes Phytophthora capsici   3 3
No Yes Hyaloperonospora arabidopsidis 22   2 2
No Yes Phaeodactylum tricornutumCCAP 1055/1   3 3
No Yes Fragilariopsis cylindrus   3 3
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Paramecium tetraurelia   14 14
No Yes Tetrahymena thermophila SB210 1   2 2
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Cryptosporidium hominis   1 1
No Yes Cryptosporidium parvum Iowa II   1 1
No Yes Naegleria gruberi   2 2
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   3 3
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Mycoplasma mycoides subsp. capri LC str. 95010   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 16 16
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 6 6
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 7 7
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 6 6
No Yes Hordeum vulgare 22 Domesticated barley 13 13
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 7 7
No Yes Homo sapiens 75_37 (old version GRC) Human 34 34
No Yes Homo sapiens (NCBI version) Human 16 16
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 8 8
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 3 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 3 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 2
No Yes Encephalitozoon intestinalis (endoparasite)   2 2
No Yes Encephalitozoon cuniculi (endoparasite)   2 2
No Yes Lotus japonicus (Early assembly)   6 6
No Yes Malus x domestica (Duplicate) Apple 10 10
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   10 9
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 7 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 7 6
No Yes Phoenix dactylifera (Early draft) Date palm 7 7
No Yes Homo sapiens 69_37 Human 9 9
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 9 9
No Yes Gorilla gorilla 69_3.1 Western gorilla 12 12
No Yes Pongo abelii 69_2 Sumatran orangutan 10 10
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 9 9
No Yes Macaca mulatta 69_1 Rhesus monkey 12 12
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 10 10
No Yes Otolemur garnettii 69_3 Small-eared galago 10 10
No Yes Microcebus murinus 69_1 Gray mouse lemur 8 8
No Yes Rattus norvegicus 69_3.4 Norway rat 9 9
No Yes Mus musculus 69_38 House mouse 8 8
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 7 7
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 9 9
No Yes Cavia porcellus 69_3 Domestic guinea pig 8 8
No Yes Oryctolagus cuniculus 69_2 Rabbit 9 9
No Yes Ochotona princeps 69 American pika 8 8
No Yes Tupaia belangeri 69 Northern tree shrew 6 6
No Yes Sus scrofa 69_10.2 Pig 7 7
No Yes Bos taurus 69_3.1 Cattle 8 8
No Yes Vicugna pacos 69_1 Alpaca 6 6
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 8 8
No Yes Mustela putorius furo 69_1.0 Domestic ferret 8 8
No Yes Ailuropoda melanoleuca 69_1 Giant panda 8 8
No Yes Canis familiaris 69_3.1 Dog 9 9
No Yes Felis catus 69 Domestic cat 9 8
No Yes Equus caballus 69_2 Horse 8 8
No Yes Myotis lucifugus 69_2.0 Little brown bat 9 9
No Yes Pteropus vampyrus 69_1 Large flying fox 8 8
No Yes Sorex araneus 69_1 European shrew 5 5
No Yes Erinaceus europaeus 69 Western European hedgehog 7 7
No Yes Procavia capensis 69_1 Cape rock hyrax 8 8
No Yes Loxodonta africana 69_3 African savanna elephant 10 10
No Yes Echinops telfairi 69 Small Madagascar hedgehog 10 10
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 6 6
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 5 5
No Yes Macropus eugenii 69_1.0 Tammar wallaby 9 9
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 7 7
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 9 9
No Yes Ornithorhynchus anatinus 69_5 Platypus 8 8
No Yes Petromyzon marinus 69_7.0 Sea lamprey 4 4
No Yes Meleagris gallopavo 69_2 Turkey 8 8
No Yes Gallus gallus 69_2 Chicken 8 8
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 7 7
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 8 8
No Yes Anolis carolinensis 69_2.0 Green anole 9 9
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 6 6
No Yes Latimeria chalumnae 69_1 Coelacanth 7 7
No Yes Gadus morhua 69_1 Atlantic cod 8 8
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 10 10
No Yes Takifugu rubripes 69_4 Torafugu 9 9
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 7 7
No Yes Oryzias latipes 69_1 Japanese medaka 7 7
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 9 9
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 9 9
No Yes Danio rerio 69_9 Zebrafish 9 9
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 69 Vase tunicate 3 3
No Yes Drosophila melanogaster 69_5 Fruit fly 3 3
No Yes Caenorhabditis elegans 69_215 Roundworm 4 4
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes NCBI 2017_08 genome   6150 6120
No Yes Protozoadb 2010_08 (Protozoadb)   7 7
No Yes STRING v9.0.5 (STRING)   375 374
No Yes Uniprot 2018_03 genome   4013 3964
No Yes Global Ocean Sampling Expedition (GOS)   7 7
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   8 8
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   12 12
No Yes TargetDB (Targets)   25 25

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