SUPERFAMILY 1.75 HMM library and genome assignments server

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Vanabin-like superfamily domain assignments
in
all eukaryotic genomes

Network of domain occurrence in all genomes


Assignment details

(show help)

4 selected genomes have 16 significant domains in 16 proteins.


Ciona savignyi 76_2.0 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCSAVP00000002961   0.000000144   41-138   Vanabin-like  
ENSCSAVP00000003239   0.000000000000126   35-136   Vanabin-like  
ENSCSAVP00000013795   9.81e-17   98-192   Vanabin-like  
 
Weak hits:
ENSCSAVP00000011692   0.00314   27-104   Vanabin-like  

Ciona intestinalis 76 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCINP00000022339   1.83e-19   32-125   Vanabin-like  
ENSCINP00000022340   6.28e-22   53-150   Vanabin-like  
ENSCINP00000022341   1.57e-16   45-144   Vanabin-like  
ENSCINP00000022343   3.79e-21   66-160   Vanabin-like  
ENSCINP00000022344   3.92e-19   35-138   Vanabin-like  
 
Weak hits:
ENSCINP00000028205   0.0314   27-104   Vanabin-like  

Ciona savignyi 69_2.0 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCSAVP00000002961   0.000000144   41-138   Vanabin-like  
ENSCSAVP00000003239   0.000000000000126   35-136   Vanabin-like  
ENSCSAVP00000013795   9.81e-17   98-192   Vanabin-like  
 
Weak hits:
ENSCSAVP00000011692   0.00314   27-104   Vanabin-like  

Ciona intestinalis 69 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCINP00000022339   1.83e-19   32-125   Vanabin-like  
ENSCINP00000022340   6.28e-22   53-150   Vanabin-like  
ENSCINP00000022341   1.57e-16   45-144   Vanabin-like  
ENSCINP00000022343   3.79e-21   66-160   Vanabin-like  
ENSCINP00000022344   3.92e-19   35-138   Vanabin-like  
 
Weak hits:
ENSCINP00000028205   0.0314   27-104   Vanabin-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   73 73
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 76 Vase tunicate 5 5
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 69 Vase tunicate 5 5
No Yes NCBI 2017_08 genome   8 8
No Yes STRING v9.0.5 (STRING)   7 7
No Yes Uniprot 2018_03 genome   20 20
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2 2
No Yes TargetDB (Targets)   1 1

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