SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


occludin/ELL-like superfamily domain assignments
in
all eukaryotic genomes

Assignment details

(show help)

25 selected genomes have 101 significant domains in 101 proteins.

Showing genomes 151 to 175 of 230
First Previous   1 2 3 4 5 6 7 8 9 10   Next Last

Ostreococcus tauri has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Ostta4|30147|0100010135   0.0000863   200-283   Occludin/ELL domain  

Thecamonas trahens ATCC 50062 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
AMSG_09254T0   0.0000000262   345-434   Occludin/ELL domain  

Pythium ultimum v1.7-2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
PYU1_T007433   0.0000968   499-548   Occludin/ELL domain  
 
Weak hits:
PYU1_T003830   0.0798   22-86   Occludin/ELL domain  
PYU1_T013158   0.00248   15-67   Occludin/ELL domain  

Cryptosporidium muris has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gb|CMU_040830   0.0000615   153-238   Occludin/ELL domain  

Naegleria gruberi has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Naegr1|68072|fgeneshNG_pg.scaffold_26000151   0.000000000196   230-323   Occludin/ELL domain  
 
Weak hits:
jgi|Naegr1|65180|fgeneshNG_pg.scaffold_13000048   0.00602   75-129   Occludin/ELL domain  
jgi|Naegr1|73618|fgeneshNG_pg.scaffold_62000045   0.0575   466-505   Occludin/ELL domain  

Guillardia theta CCMP2712 v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Guith1|112022|au.56_g13124   0.0000196   281-369   Occludin/ELL domain  
 
Weak hits:
jgi|Guith1|112296|au.58_g13398   0.0981   144-184   Occludin/ELL domain  
jgi|Guith1|116984|au.103_g18086   0.00863   451-496   Occludin/ELL domain  
jgi|Guith1|155782|fgenesh2_kg.148_#_13_#_2615_1_CCFI_CCFN_EXTA_EXTB   0.0745   137-209   Occludin/ELL domain  

Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) has 17 significant domains in 17 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|114108252|gb|AAI23027|   3.66e-36   453-560   Occludin/ELL domain  
gi|115313728|gb|AAI23965|   2.35e-35   414-517   Occludin/ELL domain  
gi|116487771|gb|AAI25791|   8.76e-35   397-500   Occludin/ELL domain  
gi|118404642|ref|NP_001072761|   8.76e-35   397-500   Occludin/ELL domain  
gi|122064339|sp|Q0IHQ3|   3.66e-36   453-560   Occludin/ELL domain  
gi|160773598|gb|AAI55468|   6.54e-35   50-155   Occludin/ELL domain  
gi|163914823|ref|NP_001106620|   6.54e-35   50-155   Occludin/ELL domain  
gi|301605344|gb|XP_002932307|   7.32e-33   499-605   Occludin/ELL domain  
gi|301607791|gb|XP_002933477|   1.7e-38   518-625   Occludin/ELL domain  
gi|301610659|gb|XP_002934862|   4.05e-33   42-143   Occludin/ELL domain  
gi|301621843|gb|XP_002940254|   3.27e-34   490-592   Occludin/ELL domain  
gi|49522993|gb|AAH75355|   2.88e-33   27-128   Occludin/ELL domain  
gi|52345732|ref|NP_001004912|   2.88e-33   27-128   Occludin/ELL domain  
gi|62859777|ref|NP_001017292|   3.66e-36   453-560   Occludin/ELL domain  
gi|62859857|ref|NP_001015948|   2.35e-35   414-517   Occludin/ELL domain  
gi|89266760|gb|CAJ82009|   2.35e-35   414-517   Occludin/ELL domain  
gi|89273909|gb|CAJ83822|   3.66e-36   453-560   Occludin/ELL domain  
 
Weak hits:
gi|110645390|gb|AAI18809|   0.00863   252-314   Occludin/ELL domain  
gi|163916468|gb|AAI57316|   0.0112   110-157   Occludin/ELL domain  
gi|166157961|ref|NP_001107390|   0.0112   110-157   Occludin/ELL domain  
gi|170284564|gb|AAI61131|   0.0222   594-659   Occludin/ELL domain  
gi|213624475|gb|AAI71153|   0.0112   110-157   Occludin/ELL domain  
gi|213624495|gb|AAI71181|   0.0112   110-157   Occludin/ELL domain  

Drosophila melanogaster FlyBase 5.12 (FlyBase) has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
FBpp0074689   5.36e-28   831-937   Occludin/ELL domain  
FBpp0291257   5.36e-28   831-937   Occludin/ELL domain  
 
Weak hits:
FBpp0289909   0.0954   64-112   Occludin/ELL domain  

Anopheles gambiae VectorBase AgamP3.6 (VectorBase) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
AGAP004795-PA|hypothetical   1.12e-28   522-627   Occludin/ELL domain  
 
Weak hits:
AGAP013330-PA|hypothetical   0.0719   49-78   Occludin/ELL domain  

Ascaris suum Victoria/Ghent has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
GS_20826   5.89e-18   486-591   Occludin/ELL domain  
 
Weak hits:
GS_18801   0.00549   184-256   Occludin/ELL domain  

Caenorhabditis elegans WormBase WS218 (WormBase) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Y24D9A.1a   0.00000000000000366   548-661   Occludin/ELL domain  
 
Weak hits:
B0414.8a   0.0575   54-88   Occludin/ELL domain  
B0414.8b   0.0458   54-88   Occludin/ELL domain  
C34D10.2   0.0445   515-564   Occludin/ELL domain  
T06D4.2   0.051   255-299   Occludin/ELL domain  

Homo sapiens 75_37 (old version GRC) has 27 significant domains in 27 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000215061   9.15e-30   149-255   Occludin/ELL domain  
ENSP00000237853   2.09e-38   528-635   Occludin/ELL domain  
ENSP00000262809   3.01e-36   509-616   Occludin/ELL domain  
ENSP00000320346   6.28e-34   287-392   Occludin/ELL domain  
ENSP00000323264   1.44e-36   442-550   Occludin/ELL domain  
ENSP00000347379   9.15e-33   416-520   Occludin/ELL domain  
ENSP00000370143   7.59e-33   362-466   Occludin/ELL domain  
ENSP00000379719   9.15e-33   416-520   Occludin/ELL domain  
ENSP00000396244   1.44e-36   430-538   Occludin/ELL domain  
ENSP00000398922   1.01e-36   326-434   Occludin/ELL domain  
ENSP00000399704   9.15e-39   278-385   Occludin/ELL domain  
ENSP00000414776   1.01e-36   326-434   Occludin/ELL domain  
ENSP00000420894   3.66e-22   46-106   Occludin/ELL domain  
ENSP00000423490   1.7e-19   442-515   Occludin/ELL domain  
ENSP00000440000   1.24e-33   94-198   Occludin/ELL domain  
ENSP00000445940   2.62e-33   165-269   Occludin/ELL domain  
ENSP00000459378   1.7e-19   442-515   Occludin/ELL domain  
ENSP00000459487   1.96e-32   416-520   Occludin/ELL domain  
ENSP00000460291   1.44e-36   442-550   Occludin/ELL domain  
ENSP00000461265   1.44e-36   430-538   Occludin/ELL domain  
ENSP00000461586   1.01e-36   326-434   Occludin/ELL domain  
ENSP00000461705   1.96e-32   416-520   Occludin/ELL domain  
ENSP00000469261   0.00000000000000101   148-223   Occludin/ELL domain  
ENSP00000470270   5.1e-30   93-199   Occludin/ELL domain  
ENSP00000470883   0.000000000000693   2-50   Occludin/ELL domain  
ENSP00000471311   0.00000000000000105   111-186   Occludin/ELL domain  
ENSP00000475648   2.09e-36   376-483   Occludin/ELL domain  
 
Weak hits:
ENSP00000204801   0.00034   51-115   Occludin/ELL domain  
  0.000929   120-184   Occludin/ELL domain  
  0.0327   8-69   Occludin/ELL domain  
ENSP00000248228   0.00759   132-194   Occludin/ELL domain  
ENSP00000301357   0.0196   7-69   Occludin/ELL domain  
ENSP00000307695   0.0641   80-142   Occludin/ELL domain  
ENSP00000315407   0.000837   141-204   Occludin/ELL domain  
  0.00101   72-135   Occludin/ELL domain  
ENSP00000315477   0.000373   95-159   Occludin/ELL domain  
  0.00115   164-228   Occludin/ELL domain  
ENSP00000316228   0.0015   131-194   Occludin/ELL domain  
  0.00615   85-148   Occludin/ELL domain  
ENSP00000335228   0.0011   80-143   Occludin/ELL domain  
ENSP00000346373   0.000405   95-159   Occludin/ELL domain  
  0.000863   165-228   Occludin/ELL domain  
ENSP00000349924   0.0017   134-194   Occludin/ELL domain  
  0.00418   84-148   Occludin/ELL domain  
ENSP00000351954   0.00471   64-127   Occludin/ELL domain  
ENSP00000354518   0.0209   267-335   Occludin/ELL domain  
ENSP00000358615   0.0157   204-264   Occludin/ELL domain  
ENSP00000377680   0.000824   95-159   Occludin/ELL domain  
  0.00405   142-205   Occludin/ELL domain  
ENSP00000425715   0.0471   14-69   Occludin/ELL domain  
ENSP00000427529   0.00392   13-86   Occludin/ELL domain  
ENSP00000463839   0.00183   1-69   Occludin/ELL domain  
ENSP00000468827   0.000373   141-204   Occludin/ELL domain  
  0.000615   71-135   Occludin/ELL domain  
ENSP00000470137   0.000981   86-148   Occludin/ELL domain  
ENSP00000470286   0.000589   79-142   Occludin/ELL domain  
  0.0111   149-193   Occludin/ELL domain  
ENSP00000470530   0.000575   71-135   Occludin/ELL domain  
ENSP00000470658   0.00127   141-204   Occludin/ELL domain  
  0.00183   72-135   Occludin/ELL domain  
ENSP00000471125   0.000549   79-143   Occludin/ELL domain  
  0.0118   149-193   Occludin/ELL domain  

Homo sapiens (NCBI version) has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|13375756|ref|NP_078854.1|   9.15e-30   149-255   Occludin/ELL domain  
gi|13376768|ref|NP_079441.1|   6.28e-34   287-392   Occludin/ELL domain  
gi|155722987|ref|NP_036213.2|   2.09e-38   528-635   Occludin/ELL domain  
gi|289666784|ref|NP_001033692.2|   1.44e-36   442-550   Occludin/ELL domain  
gi|327478414|ref|NP_001192183.1|   9.15e-33   416-520   Occludin/ELL domain  
gi|327478416|ref|NP_001192184.1|   2.62e-33   165-269   Occludin/ELL domain  
gi|4505487|ref|NP_002529.1|   9.15e-33   416-520   Occludin/ELL domain  
gi|5729812|ref|NP_006523.1|   3.01e-36   509-616   Occludin/ELL domain  
 
Weak hits:
gi|10863957|ref|NP_066978.1|   0.000373   95-159   Occludin/ELL domain  
  0.00115   164-228   Occludin/ELL domain  
gi|145309298|ref|NP_443089.3|   0.0209   267-335   Occludin/ELL domain  
gi|195539368|ref|NP_001124198.1|   0.0471   14-69   Occludin/ELL domain  
gi|223029382|ref|NP_001138366.1|   0.00034   51-115   Occludin/ELL domain  
  0.000929   120-184   Occludin/ELL domain  
  0.0327   8-69   Occludin/ELL domain  
gi|223029386|ref|NP_001138368.1|   0.000837   141-204   Occludin/ELL domain  
  0.00101   72-135   Occludin/ELL domain  
gi|223029388|ref|NP_001138369.1|   0.000405   95-159   Occludin/ELL domain  
  0.000863   165-228   Occludin/ELL domain  
gi|223278335|ref|NP_001138376.1|   0.0011   80-143   Occludin/ELL domain  
gi|223278337|ref|NP_001138377.1|   0.0017   107-170   Occludin/ELL domain  
gi|223278342|ref|NP_001138379.1|   0.00471   64-127   Occludin/ELL domain  
gi|223278347|ref|NP_001138381.1|   0.000405   107-171   Occludin/ELL domain  
gi|223278350|ref|NP_001138382.1|   0.00157   108-171   Occludin/ELL domain  
gi|223278353|ref|NP_001138383.1|   0.000549   79-143   Occludin/ELL domain  
  0.0118   149-193   Occludin/ELL domain  
gi|223671872|ref|NP_001138727.1|   0.0157   204-264   Occludin/ELL domain  
gi|40217801|ref|NP_954575.1|   0.0641   80-142   Occludin/ELL domain  
gi|42542390|ref|NP_055072.3|   0.0015   131-194   Occludin/ELL domain  
  0.00615   85-148   Occludin/ELL domain  

Mus musculus 63_37 (longest transcript per gene) (Duplicate) has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000001583   2.09e-38   527-634   Occludin/ELL domain  
ENSMUSP00000002469   2.75e-30   102-209   Occludin/ELL domain  
ENSMUSP00000022137   8.5e-36   439-547   Occludin/ELL domain  
ENSMUSP00000022140   6.02e-33   415-518   Occludin/ELL domain  
ENSMUSP00000028679   3.27e-34   285-390   Occludin/ELL domain  
ENSMUSP00000091163   3.27e-36   490-597   Occludin/ELL domain  
 
Weak hits:
ENSMUSP00000056154   0.0314   258-324   Occludin/ELL domain  
ENSMUSP00000056774   0.0863   540-586   Occludin/ELL domain  

Loa loa v3.3 (Request) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
LOAG_05537T0   4.45e-23   477-582   Occludin/ELL domain  
 
Weak hits:
LOAG_04917T0   0.0131   370-416   Occludin/ELL domain  

Wuchereria bancrofti v1.0 (Request) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
WUBG_07480T0   9.15e-25   39-144   Occludin/ELL domain  
 
Weak hits:
WUBG_00955T0   0.00484   377-423   Occludin/ELL domain  
WUBG_14434T0   0.0017   18-88   Occludin/ELL domain  

Brugia malayi v1.0 (Duplicate) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Bm1_52385   9.29e-24   467-573   Occludin/ELL domain  
 
Weak hits:
Bm1_51810   0.00589   438-484   Occludin/ELL domain  

Lotus japonicus (Early assembly) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
chr3.CM0142.160.nd   0.00000127   327-387   Occludin/ELL domain  
 
Weak hits:
LjSGA_080414.1   0.00144   7-65   Occludin/ELL domain  
chr3.LjT11G09.120.nc   0.0654   54-126   Occludin/ELL domain  

Malus x domestica (Duplicate) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
MDP0000264457   0.0000000144   1129-1224   Occludin/ELL domain  

Solanum pimpinellifolium A-1.0 (Early draft) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Sopim03g121380.0.1   0.000000068   1126-1221   Occludin/ELL domain  
 
Weak hits:
Sopim05g051580.0.1   0.0641   526-601   Occludin/ELL domain  

Solanum lycopersicum v2.3 (Early assembly) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Solyc03g121380.2.1   0.000000068   1126-1221   Occludin/ELL domain  
 
Weak hits:
Solyc05g051580.2.1   0.0641   526-601   Occludin/ELL domain  

Homo sapiens 69_37 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000215061   9.15e-30   149-255   Occludin/ELL domain  
ENSP00000237853   2.09e-38   528-635   Occludin/ELL domain  
ENSP00000262809   3.01e-36   509-616   Occludin/ELL domain  
ENSP00000320346   6.28e-34   287-392   Occludin/ELL domain  
ENSP00000323264   1.44e-36   442-550   Occludin/ELL domain  
ENSP00000347379   9.15e-33   416-520   Occludin/ELL domain  
ENSP00000458782   1.44e-36   442-550   Occludin/ELL domain  
ENSP00000459436   1.96e-32   416-520   Occludin/ELL domain  
 
Weak hits:
ENSP00000204801   0.000373   95-159   Occludin/ELL domain  
  0.00115   164-228   Occludin/ELL domain  
ENSP00000248228   0.0015   131-194   Occludin/ELL domain  
  0.00615   85-148   Occludin/ELL domain  
ENSP00000354518   0.0209   267-335   Occludin/ELL domain  
ENSP00000374260   0.0471   14-69   Occludin/ELL domain  

Pan troglodytes 69_2.1.4 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000011966   6.28e-34   287-392   Occludin/ELL domain  
ENSPTRP00000018193   9.15e-30   149-255   Occludin/ELL domain  
ENSPTRP00000029037   6.02e-36   443-551   Occludin/ELL domain  
ENSPTRP00000029254   2.09e-38   528-635   Occludin/ELL domain  
ENSPTRP00000054719   9.15e-33   416-520   Occludin/ELL domain  
 
Weak hits:
ENSPTRP00000015362   0.0209   267-335   Occludin/ELL domain  
ENSPTRP00000043621   0.00106   154-213   Occludin/ELL domain  
  0.00379   200-263   Occludin/ELL domain  
ENSPTRP00000054856   0.000314   95-159   Occludin/ELL domain  
  0.00157   164-224   Occludin/ELL domain  

Gorilla gorilla 69_3.1 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000000214   9.02e-20   528-587   Occludin/ELL domain  
ENSGGOP00000002400   2.75e-36   479-586   Occludin/ELL domain  
ENSGGOP00000010701   3.53e-30   149-255   Occludin/ELL domain  
ENSGGOP00000012902   6.54e-34   287-392   Occludin/ELL domain  
ENSGGOP00000015177   1.44e-36   443-551   Occludin/ELL domain  
ENSGGOP00000020548   3.4e-34   78-185   Occludin/ELL domain  
 
Weak hits:
ENSGGOP00000005538   0.000262   97-161   Occludin/ELL domain  
  0.00235   147-207   Occludin/ELL domain  
ENSGGOP00000017995   0.017   242-300   Occludin/ELL domain  
ENSGGOP00000021876   0.000464   131-194   Occludin/ELL domain  
  0.00811   84-147   Occludin/ELL domain  

Pongo abelii 69_2 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000000794   3.14e-34   481-588   Occludin/ELL domain  
ENSPPYP00000007277   3.79e-34   287-392   Occludin/ELL domain  
ENSPPYP00000017355   1.57e-36   443-551   Occludin/ELL domain  
ENSPPYP00000017356   9.15e-33   416-520   Occludin/ELL domain  
ENSPPYP00000017357   9.15e-33   416-520   Occludin/ELL domain  
ENSPPYP00000017492   2.09e-38   528-635   Occludin/ELL domain  
 
Weak hits:
ENSPPYP00000009190   0.0209   267-335   Occludin/ELL domain  
ENSPPYP00000010638   0.00183   96-159   Occludin/ELL domain  
  0.0034   167-228   Occludin/ELL domain  

First Previous   1 2 3 4 5 6 7 8 9 10   Next Last
Showing genomes 151 to 175 of 230

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a occludin/ELL-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   6321 6321
No Yes Homo sapiens 76_38 Human 27 27
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 5 5
No Yes Gorilla gorilla 76_3.1 Western gorilla 8 8
No Yes Pongo abelii 76_2 Sumatran orangutan 6 6
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 7 7
No Yes Papio anubis 76 Olive baboon 9 9
No Yes Macaca mulatta 76_1 Rhesus monkey 9 9
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 11 11
No Yes Otolemur garnettii 76_3 Small-eared galago 5 5
No Yes Microcebus murinus 76_1 Gray mouse lemur 5 5
No Yes Rattus norvegicus 76_5.0 Norway rat 7 7
No Yes Mus musculus 76_38 House mouse 12 12
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 3 3
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 6 6
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 8 8
No Yes Cavia porcellus 76_3 Domestic guinea pig 7 7
No Yes Oryctolagus cuniculus 76_2 Rabbit 6 6
No Yes Ochotona princeps 76 American pika 5 5
No Yes Tupaia belangeri 76 Northern tree shrew 5 5
No Yes Sus scrofa 76_10.2 Pig 9 9
No Yes Bos taurus 76_3.1 Cattle 8 8
No Yes Ovis aries 76_3.1 Sheep 9 9
No Yes Vicugna pacos 76_1 Alpaca 4 4
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 6 6
No Yes Mustela putorius furo 76_1.0 Domestic ferret 7 7
No Yes Ailuropoda melanoleuca 76_1 Giant panda 7 7
No Yes Canis familiaris 76_3.1 Dog 12 11
No Yes Felis catus 76_6.2 Domestic cat 7 7
No Yes Equus caballus 76_2 Horse 6 6
No Yes Myotis lucifugus 76_2.0 Little brown bat 9 9
No Yes Pteropus vampyrus 76_1 Large flying fox 6 6
No Yes Sorex araneus 76_1 European shrew 5 5
No Yes Erinaceus europaeus 76 Western European hedgehog 3 3
No Yes Procavia capensis 76_1 Cape rock hyrax 6 6
No Yes Loxodonta africana 76_3 African savanna elephant 7 7
No Yes Echinops telfairi 76 Small Madagascar hedgehog 4 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 6 6
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 3 3
No Yes Macropus eugenii 76_1.0 Tammar wallaby 6 6
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 8 8
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 7 7
No Yes Ornithorhynchus anatinus 76_5 Platypus 5 5
No Yes Saccoglossus kowalevskii v3.0   2 2
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 76_2 Turkey 3 3
No Yes Gallus gallus 76_4 Chicken 3 3
No Yes Anas platyrhynchos 76_1.0 Mallard 5 5
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 2 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 7 7
No Yes Anolis carolinensis 76_2.0 Green anole 3 3
No Yes Xenopus laevis African clawed frog 11 11
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 11 11
No Yes Latimeria chalumnae 76_1 Coelacanth 11 11
No Yes Lepisosteus oculatus 76 Spotted gar 9 9
No Yes Gadus morhua 76_1 Atlantic cod 12 12
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 14 14
No Yes Takifugu rubripes 76_4 Torafugu 48 48
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 18 18
No Yes Oryzias latipes 76_1 Japanese medaka 16 16
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 12 12
No Yes Poecilia formosa 76 Amazon molly 13 12
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 18 18
No Yes Astyanax mexicanus 76 Mexican tetra 8 8
No Yes Danio rerio 76_9 Zebrafish 19 19
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2 2
No Yes Adineta vaga   2 2
No Yes Octopus bimaculoides 280   1 1
No Yes Lottia gigantea Owl limpet 1 1
No Yes Capitella sp. I   1 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 2 2
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 2 2
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   1 1
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   2 2
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 2 2
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 2 2
No Yes Schistosoma mansoni   2 2
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Hydra vulgaris   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Pinus taeda Loblolly pine 1 1
No Yes Eucalyptus grandis v201 Rose gum 1 1
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Medicago truncatula Barrel medic 1 1
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 1 1
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Zea mays subsp. mays Maize 1 1
No Yes Zea mays v181 Maize 1 1
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Ostreococcus tauri   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Cryptosporidium muris   1 1
No Yes Naegleria gruberi   1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Methanocaldococcus fervens AG86   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 17 17
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 2 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Clostridium acidurici 9a   1 1
No Yes Leuconostoc carnosum JB16   1 1
No Yes Paenibacillus mucilaginosus K02   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 27 27
No Yes Homo sapiens (NCBI version) Human 8 8
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 6 6
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 1 1
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 8 8
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 5 5
No Yes Gorilla gorilla 69_3.1 Western gorilla 6 6
No Yes Pongo abelii 69_2 Sumatran orangutan 6 6
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 7 7
No Yes Macaca mulatta 69_1 Rhesus monkey 7 7
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 6 6
No Yes Otolemur garnettii 69_3 Small-eared galago 5 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 5 5
No Yes Rattus norvegicus 69_3.4 Norway rat 8 7
No Yes Mus musculus 69_38 House mouse 6 6
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 3 3
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 6 6
No Yes Cavia porcellus 69_3 Domestic guinea pig 7 7
No Yes Oryctolagus cuniculus 69_2 Rabbit 6 6
No Yes Ochotona princeps 69 American pika 5 5
No Yes Tupaia belangeri 69 Northern tree shrew 5 5
No Yes Sus scrofa 69_10.2 Pig 8 8
No Yes Bos taurus 69_3.1 Cattle 8 8
No Yes Vicugna pacos 69_1 Alpaca 4 4
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 6 6
No Yes Mustela putorius furo 69_1.0 Domestic ferret 7 7
No Yes Ailuropoda melanoleuca 69_1 Giant panda 7 7
No Yes Canis familiaris 69_3.1 Dog 8 7
No Yes Felis catus 69 Domestic cat 5 5
No Yes Equus caballus 69_2 Horse 6 6
No Yes Myotis lucifugus 69_2.0 Little brown bat 8 8
No Yes Pteropus vampyrus 69_1 Large flying fox 6 6
No Yes Sorex araneus 69_1 European shrew 5 5
No Yes Erinaceus europaeus 69 Western European hedgehog 3 3
No Yes Procavia capensis 69_1 Cape rock hyrax 6 6
No Yes Loxodonta africana 69_3 African savanna elephant 7 7
No Yes Echinops telfairi 69 Small Madagascar hedgehog 4 4
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 4 4
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 3 3
No Yes Macropus eugenii 69_1.0 Tammar wallaby 6 6
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 7 7
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 7 7
No Yes Ornithorhynchus anatinus 69_5 Platypus 5 5
No Yes Petromyzon marinus 69_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 69_2 Turkey 3 3
No Yes Gallus gallus 69_2 Chicken 3 3
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 2 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 5 5
No Yes Anolis carolinensis 69_2.0 Green anole 4 4
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 9 9
No Yes Latimeria chalumnae 69_1 Coelacanth 7 7
No Yes Gadus morhua 69_1 Atlantic cod 12 12
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 12 12
No Yes Takifugu rubripes 69_4 Torafugu 13 13
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 12 12
No Yes Oryzias latipes 69_1 Japanese medaka 11 11
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 12 12
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 12 12
No Yes Danio rerio 69_9 Zebrafish 10 10
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes NCBI 2017_08 genome   2792 2786
No Yes Protozoadb 2010_08 (Protozoadb)   2 2
No Yes STRING v9.0.5 (STRING)   197 196
No Yes Uniprot 2018_03 genome   1693 1682
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   11 11
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   11 11
No Yes TargetDB (Targets)   9 9

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]