SUPERFAMILY 1.75 HMM library and genome assignments server

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HP0062-like superfamily domain assignments
in
Rickettsia parkeri str. Portsmouth


No domain assignments for these genomes.


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View all assignments containing a HP0062-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   2540 2540
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 1 1
No Yes Citrus clementina v165   1 1
No Yes Leptolyngbya sp. PCC 7376   2 2
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Brachybacterium faecium DSM 4810   2 2
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Chloroflexus sp. MS-G   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus coagulans 2-6   1 1
No Yes Capnocytophaga canimorsus Cc5   1 1
No Yes Phycisphaera mikurensis NBRC 102666   1 1
No Yes Isosphaera pallida ATCC 43644   2 2
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Helicobacter bizzozeronii CIII-1   1 1
No Yes Helicobacter felis ATCC 49179   1 1
No Yes Helicobacter pylori B38   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Bordetella petrii DSM 12804   2 2
No Yes Methylomonas methanica MC09   1 1
No Yes Arthrospira platensis NIES-39   3 3
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Helicobacter pylori BM012S   1 1
No Yes Helicobacter pylori BM012A   1 1
No Yes Helicobacter pylori SouthAfrica20   1 1
No Yes Helicobacter pylori UM066   1 1
No Yes Helicobacter pylori UM037   1 1
No Yes Helicobacter pylori OK310   1 1
No Yes Helicobacter pylori OK113   1 1
No Yes Helicobacter pylori Rif2   1 1
No Yes Helicobacter pylori Rif1   1 1
No Yes Helicobacter pylori HUP-B14   1 1
No Yes Helicobacter pylori PeCan18   1 1
No Yes Helicobacter pylori Shi169   1 1
No Yes Helicobacter pylori Shi112   1 1
No Yes Helicobacter pylori Shi417   1 1
No Yes Helicobacter pylori XZ274   2 2
No Yes Helicobacter pylori Aklavik86   1 1
No Yes Helicobacter pylori Aklavik117   1 1
No Yes Helicobacter pylori SNT49   1 1
No Yes Helicobacter pylori Puno135   1 1
No Yes Helicobacter pylori Puno120   1 1
No Yes Helicobacter pylori ELS37   1 1
No Yes Helicobacter pylori Gambia94/24   1 1
No Yes Helicobacter pylori SouthAfrica7   1 1
No Yes Helicobacter pylori India7   1 1
No Yes Helicobacter pylori Lithuania75   1 1
No Yes Helicobacter pylori F57   1 1
No Yes Helicobacter pylori F30   2 2
No Yes Helicobacter pylori F16   1 1
No Yes Helicobacter pylori Sat464   1 1
No Yes Helicobacter pylori Cuz20   1 1
No Yes Helicobacter pylori PeCan4   1 1
No Yes Helicobacter pylori SJM180   1 1
No Yes Helicobacter pylori B8   1 1
No Yes Helicobacter pylori 52   1 1
No Yes Helicobacter pylori v225d   2 2
No Yes Helicobacter pylori 83   1 1
No Yes Helicobacter pylori 35A   1 1
No Yes Helicobacter pylori P12   1 1
No Yes Helicobacter pylori G27   1 1
No Yes Helicobacter pylori Shi470   1 1
No Yes Helicobacter pylori HPAG1   1 1
No Yes Helicobacter pylori F32   1 1
No Yes Helicobacter pylori J99   1 1
No Yes Helicobacter pylori 26695   1 1
No Yes Helicobacter pylori 26695   1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   4 4
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   2 2
No Yes NCBI 2017_08 genome   1497 1497
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   23 23
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   685 685
No Yes Global Ocean Sampling Expedition (GOS)   7 7
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   49 49
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   111 111
No Yes TargetDB (Targets)   1 1

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