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RbcX-like superfamily domain assignments
in
all genomes

Assignment details

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25 selected genomes have 91 significant domains in 91 proteins.

Showing genomes 1 to 25 of 152
  1 2 3 4 5 6 7   Next Last

Selaginella moellendorffii has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Selmo1|130756|e_gw1.102.325.1   1.07e-31   4-120   RbcX-like  
jgi|Selmo1|170158|estExt_Genewise1Plus.C_110280   1.01e-35   4-119   RbcX-like  
jgi|Selmo1|48688|gw1.60.511.1   6.93e-38   9-122   RbcX-like  

Eucalyptus grandis v201 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
Eucgr.B03687.1|PACid:23569067   1.1e-29   106-189   RbcX-like  
Eucgr.B03687.2|PACid:23569068   9.55e-40   106-225   RbcX-like  
Eucgr.E03993.1|PACid:23580279   2.35e-34   54-173   RbcX-like  
Eucgr.E03993.2|PACid:23580280   1.31e-19   54-119   RbcX-like  
Eucgr.E03993.3|PACid:23580281   1.31e-19   54-119   RbcX-like  
Eucgr.J00766.1|PACid:23598605   1.83e-39   86-205   RbcX-like  

Theobroma cacao B97-61/B2 v1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
Tc06_g019730   6.28e-37   54-171   RbcX-like  
Tc09_g025970   8.37e-41   103-222   RbcX-like  
 
Weak hits:
Tc04_g020830   0.0255   6-82   RbcX-like  

Gossypium raimondii v221 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
Gorai.006G128600.1|PACid:26834717   6.15e-41   89-208   RbcX-like  
Gorai.006G128600.2|PACid:26834718   2.09e-31   89-175   RbcX-like  
Gorai.009G073300.1|PACid:26762655   8.11e-41   105-224   RbcX-like  
Gorai.010G183200.1|PACid:26757065   0.0000000000000405   52-123   RbcX-like  
Gorai.011G012000.1|PACid:26808052   2.35e-37   62-180   RbcX-like  
Gorai.011G012000.2|PACid:26808053   5.1e-21   62-125   RbcX-like  
Gorai.011G012000.3|PACid:26808054   4.97e-21   62-125   RbcX-like  

Citrus clementina v165 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
clementine0.9_020972m|PACid:19255978   1.44e-41   104-223   RbcX-like  
clementine0.9_020976m|PACid:19255977   2.88e-42   104-223   RbcX-like  
clementine0.9_025488m|PACid:19271366   1.57e-37   6-124   RbcX-like  

Citrus sinensis v154 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
orange1.1g027198m|PACid:18124184   1.44e-41   104-223   RbcX-like  
orange1.1g027229m|PACid:18124185   2.88e-42   104-223   RbcX-like  
orange1.1g027267m|PACid:18124186   1.44e-39   104-222   RbcX-like  
orange1.1g027464m|PACid:18124187   1.7e-21   104-164   RbcX-like  
orange1.1g030868m|PACid:18112680   8.5e-38   52-168   RbcX-like  
orange1.1g032587m|PACid:18112681   1.16e-25   52-131   RbcX-like  
 
Weak hits:
orange1.1g036694m|PACid:18126458   0.0334   9-41   RbcX-like  

Thellungiella halophila v173 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
Thhalv10015929m|PACid:20206219   1.16e-39   63-174   RbcX-like  
Thhalv10029002m|PACid:20197951   1.7e-21   56-121   RbcX-like  
Thhalv10029011m|PACid:20197952   1.96e-38   58-177   RbcX-like  

Brassica rapa Chiifu-401 1.2 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
Bra002265   1.96e-37   82-212   RbcX-like  
Bra006522   1.96e-40   83-200   RbcX-like  
Bra020067   2.09e-41   79-196   RbcX-like  
Bra029488   1.31e-38   54-173   RbcX-like  
 
Weak hits:
Bra029449   0.0131   88-142   RbcX-like  

Capsella rubella v183 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
Carubv10002092m|PACid:20907335   3.27e-38   55-174   RbcX-like  
Carubv10002631m|PACid:20911162   2.75e-41   84-200   RbcX-like  
 
Weak hits:
Carubv10019761m|PACid:20906768   0.0497   444-505   RbcX-like  
Carubv10019978m|PACid:20906769   0.0301   444-505   RbcX-like  

Arabidopsis lyrata has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Araly1|863996|Al_scaffold_0006_3505   8.76e-38   55-174   RbcX-like  
jgi|Araly1|910022|scaffold_602079.1   1.24e-40   84-200   RbcX-like  
 
Weak hits:
jgi|Araly1|908695|scaffold_600752.1   0.0628   18-48   RbcX-like  

Arabidopsis thaliana 10 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
AT4G04330.1   1.22e-38   54-173   RbcX-like  
AT5G19855.1   4.45e-41   85-201   RbcX-like  
 
Weak hits:
AT1G32870.1   0.0129   320-379   RbcX-like  
AT1G32870.2   0.0126   320-379   RbcX-like  

Carica papaya has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
evm.TU.supercontig_84.52   2.75e-41   96-215   RbcX-like  
 
Weak hits:
evm.TU.contig_44700.1   0.0231   24-71   RbcX-like  

Medicago truncatula has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
Medtr2g024300.1   1.96e-37   56-172   RbcX-like  
Medtr3g061630.1   2.22e-39   101-218   RbcX-like  
Medtr3g061630.2   2.22e-39   101-218   RbcX-like  

Phaseolus vulgaris v186 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
Phvulv091007676m|PACid:23541492   1.57e-41   99-218   RbcX-like  
Phvulv091014596m|PACid:23544702   1.7e-36   53-166   RbcX-like  
Phvulv091024959m|PACid:23548125   9.55e-42   88-205   RbcX-like  

Glycine max v109 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
Glyma08g45070.1|PACid:16273882   7.72e-42   103-222   RbcX-like  
Glyma08g45070.2|PACid:16273883   1.83e-31   103-186   RbcX-like  
Glyma09g00950.1|PACid:16274355   1.57e-37   54-171   RbcX-like  
Glyma14g01340.1|PACid:16293956   1.44e-41   77-196   RbcX-like  
Glyma15g11800.1|PACid:16298470   1.44e-37   54-171   RbcX-like  
Glyma18g07850.1|PACid:16308238   1.12e-41   98-217   RbcX-like  
 
Weak hits:
Glyma01g02830.1|PACid:16243197   0.0785   624-679   RbcX-like  

Cucumis sativus v122 has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
Cucsa.044970.1|PACid:16953287   5.1e-26   99-189   RbcX-like  
Cucsa.044970.2|PACid:16953288   2.75e-39   55-171   RbcX-like  
Cucsa.044970.3|PACid:16953289   1.96e-39   37-153   RbcX-like  
Cucsa.044970.4|PACid:16953290   0.00000000249   99-135   RbcX-like  
Cucsa.065580.1|PACid:16955063   2.35e-39   98-213   RbcX-like  
Cucsa.143380.1|PACid:16963776   1.44e-40   100-219   RbcX-like  
Cucsa.143380.2|PACid:16963777   1.7e-37   100-217   RbcX-like  
Cucsa.143380.3|PACid:16963778   1.44e-35   100-215   RbcX-like  
Cucsa.143380.4|PACid:16963779   4.45e-31   100-184   RbcX-like  
Cucsa.143380.5|PACid:16963780   1.83e-20   100-160   RbcX-like  

Fragaria vesca has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gene14674   3.4e-38   99-211   RbcX-like  
gene19497   1.7e-37   56-176   RbcX-like  
 
Weak hits:
gene00615   0.0726   150-175   RbcX-like  

Malus domestica v196 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
MDP0000206093|PACid:22637260   7.46e-37   58-175   RbcX-like  
MDP0000314803|PACid:22648961   3.66e-41   104-220   RbcX-like  

Prunus persica v139 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ppa011093m|PACid:17651028   2.09e-39   103-219   RbcX-like  
ppa012409m|PACid:17642227   1.27e-37   51-167   RbcX-like  
 
Weak hits:
ppa000771m|PACid:17645318   0.0497   760-799   RbcX-like  

Linum usitatissimum v200 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
Lus10002563|PACid:23165492   3.53e-40   64-183   RbcX-like  
Lus10004588|PACid:23149786   3.14e-18   20-150   RbcX-like  
Lus10009941|PACid:23150137   4.05e-40   91-210   RbcX-like  
Lus10011972|PACid:23161457   1.31e-32   76-193   RbcX-like  
Lus10027363|PACid:23145435   2.22e-39   69-188   RbcX-like  
Lus10030141|PACid:23172550   1.7e-40   92-211   RbcX-like  

Manihot esculenta v147 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
cassava4.1_015491m|PACid:17966830   5.89e-40   104-221   RbcX-like  
cassava4.1_015569m|PACid:17971325   6.54e-40   104-223   RbcX-like  
cassava4.1_015584m|PACid:17971326   1.31e-40   104-223   RbcX-like  
cassava4.1_017561m|PACid:17967121   3.14e-36   53-170   RbcX-like  
 
Weak hits:
cassava4.1_017778m|PACid:17975694   0.0824   37-62   RbcX-like  

Populus trichocarpa v156 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
POPTR_0001s26540.1|PACid:18235493   6.28e-43   103-222   RbcX-like  
POPTR_0009s05790.1|PACid:18228490   1.7e-42   98-217   RbcX-like  
POPTR_0011s01520.1|PACid:18230971   2.22e-38   53-169   RbcX-like  

Vitis vinifera has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
GSVIVT01012660001   3.27e-37   70-185   RbcX-like  
GSVIVT01025257001   1.1e-41   45-164   RbcX-like  
GSVIVT01032095001   2.62e-42   29-148   RbcX-like  

Mimulus guttatus v140 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
mgv1a013794m|PACid:17691726   1.83e-39   86-203   RbcX-like  
mgv1a014794m|PACid:17672304   2.22e-33   51-170   RbcX-like  
mgv1a022704m|PACid:17683206   1.96e-38   92-211   RbcX-like  

Solanum lycopersicum v.2.3 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
Solyc01g087190.2.1   1.03e-33   103-215   RbcX-like  
Solyc02g081060.2.1   0.00000000000262   7-57   RbcX-like  
Solyc11g065740.1.1   2.88e-37   92-210   RbcX-like  
 
Weak hits:
Solyc01g094410.2.1   0.0314   760-801   RbcX-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   3616 3616
No Yes Selaginella moellendorffii   3 3
No Yes Eucalyptus grandis v201 Rose gum 6 6
No Yes Theobroma cacao B97-61/B2 v1 Cacao 2 2
No Yes Gossypium raimondii v221   7 7
No Yes Citrus clementina v165   3 3
No Yes Citrus sinensis v154 Sweet orange 6 6
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 4 4
No Yes Capsella rubella v183   2 2
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 3 3
No Yes Phaseolus vulgaris v186 French bean 3 3
No Yes Glycine max v109 Soybean 6 6
No Yes Cucumis sativus v122 Cucumber 10 10
No Yes Fragaria vesca Wild strawberry 2 2
No Yes Malus domestica v196 Apple 2 2
No Yes Prunus persica v139 Peach 2 2
No Yes Linum usitatissimum v200 Flax 6 6
No Yes Manihot esculenta v147 Cassava 4 4
No Yes Populus trichocarpa v156 Black cottonwood 3 3
No Yes Vitis vinifera Wine grape 3 3
No Yes Mimulus guttatus v140 Spotted monkey flower 3 3
No Yes Solanum lycopersicum v.2.3 Tomato 3 3
No Yes Solanum tuberosum Potato 5 5
No Yes Actinidia chinensis Hongyang   2 2
No Yes Aquilegia coerulea v195   3 3
No Yes Triticum urartu 22   3 3
No Yes Triticum aestivum 22 Bread wheat 9 9
No Yes Aegilops tauschii 22   3 2
No Yes Brachypodium distachyon Stiff brome 5 5
No Yes Oryza barthii 22 African wild rice 3 3
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   3 3
No Yes Oryza glaberrima African rice 3 3
No Yes Oryza punctata 22   2 2
No Yes Oryza nivara 22   3 3
No Yes Oryza brachyantha 22 Malo sina 3 3
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 4 4
No Yes Oryza sativa v193 Rice 4 4
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 7 7
No Yes Setaria italica v164 Foxtail millet 3 3
No Yes Zea mays subsp. mays Maize 5 5
No Yes Zea mays v181 Maize 6 6
No Yes Sorghum bicolor Sorghum 3 3
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 3 3
No Yes Amborella trichopoda 22   2 2
No Yes Physcomitrella patens   3 3
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   5 5
No Yes Chlorella vulgaris   3 3
No Yes Volvox carteri f. nagariensis   4 4
No Yes Volvox carteri v199   3 3
No Yes Chlamydomonas reinhardtii 4.0   3 3
No Yes Ostreococcus sp. RCC809   8 8
No Yes Ostreococcus lucimarinus CCE9901   8 8
No Yes Ostreococcus tauri   5 5
No Yes Bathycoccus prasinos   7 7
No Yes Micromonas sp. RCC299   5 5
No Yes Micromonas pusilla CCMP1545 v3.0   7 6
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Cyanophora paradoxa   1 1
No Yes Guillardia theta CCMP2712 v1.0   2 1
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Geitlerinema sp. PCC 7407   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Halothece sp. PCC 7418   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 2 2
No Yes Hordeum vulgare 22 Domesticated barley 7 7
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 3 3
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 2 2
No Yes Lotus japonicus (Early assembly)   2 2
No Yes Malus x domestica (Duplicate) Apple 2 2
No Yes Ricinus communis (Early assembly) Castor bean 2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   5 5
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 3 3
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 3 3
No Yes Phoenix dactylifera (Early draft) Date palm 2 2
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes 4_050719Q (meta-genome)   4 4
No Yes 5_050719P (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes NCBI 2017_08 genome   583 580
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   61 61
No Yes Uniprot 2018_03 genome   2125 2120
No Yes Global Ocean Sampling Expedition (GOS)   10 10
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   87 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   156 156
No Yes TargetDB (Targets)   4 4

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