SUPERFAMILY 1.75 HMM library and genome assignments server

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YopX-like superfamily domain assignments
in
Vanderwaltozyma polyspora DSM 70294


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Select to display   Genome       Domains   Proteins
No Yes ALL   21646 21646
No Yes Aspergillus zonatus v1.0   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Desulfitobacterium hafniense Y51   1 1
No Yes Desulfitobacterium dehalogenans ATCC 51507   2 2
No Yes Clostridium lentocellum DSM 5427   2 2
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium ljungdahlii DSM 13528   1 1
No Yes Clostridium kluyveri DSM 555   3 3
No Yes Clostridium tetani E88   1 1
No Yes Clostridium botulinum A str. ATCC 3502   2 2
No Yes Tetragenococcus halophilus NBRC 12172   1 1
No Yes Enterococcus sp. 7L76   2 2
No Yes Enterococcus hirae ATCC 9790   2 2
No Yes Enterococcus faecium Aus0004   3 3
No Yes Lactobacillus casei ATCC 334   1 1
No Yes Lactobacillus rhamnosus Lc 705   1 1
No Yes Lactobacillus plantarum JDM1   1 1
No Yes Lactobacillus buchneri NRRL B-30929   2 2
No Yes Lactobacillus buchneri   1 1
No Yes Streptococcus pseudopneumoniae IS7493   2 2
No Yes Streptococcus equi subsp. equi 4047   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis GGS_124   1 1
No Yes Streptococcus pyogenes str. Manfredo   1 1
No Yes Streptococcus pneumoniae P1031   1 1
No Yes Streptococcus salivarius 57.I   1 1
No Yes Paenibacillus polymyxa M1   1 1
No Yes Listeria welshimeri serovar 6b str. SLCC5334   1 1
No Yes Listeria innocua Clip11262   2 2
No Yes Bacillus atrophaeus 1942   1 1
No Yes Bacillus subtilis subsp. subtilis str. 168   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus clausii KSM-K16   1 1
No Yes Macrococcus caseolyticus JCSC5402   2 2
No Yes Staphylococcus pseudintermedius HKU10-03   2 2
No Yes Staphylococcus epidermidis RP62A   1 1
No Yes Staphylococcus aureus subsp. aureus JH1   2 2
No Yes Pelodictyon phaeoclathratiforme BU-1   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Fibrella aestuarina   2 2
No Yes Runella slithyformis DSM 19594   1 1
No Yes Parabacteroides distasonis ATCC 8503   1 1
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Gramella forsetii KT0803   2 2
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Treponema denticola ATCC 35405   1 1
No Yes Persephonella marina EX-H1   1 1
No Yes Sebaldella termitidis ATCC 33386   4 4
No Yes Campylobacter curvus 525.92   1 1
No Yes Campylobacter jejuni subsp. doylei 269.97   3 3
No Yes Helicobacter cinaedi PAGU611   2 2
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Francisella cf. novicida 3523   1 1
No Yes Ruminococcus champanellensis 18P13   1 1
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   1 1
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium autoethanogenum DSM 10061   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Clostridium kluyveri NBRC 12016   2 2
No Yes Clostridium botulinum Ba4 str. 657   2 2
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   3 3
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Carnobacterium maltaromaticum LMA28   3 3
No Yes Enterococcus mundtii QU 25   3 3
No Yes Enterococcus faecium Aus0085   3 3
No Yes Enterococcus faecium DO   1 1
No Yes Enterococcus faecalis str. Symbioflor 1   2 2
No Yes Enterococcus faecalis D32   2 2
No Yes Enterococcus faecalis V583   1 1
No Yes Lactobacillus casei LOCK919   1 1
No Yes Lactobacillus reuteri TD1   1 1
No Yes Lactobacillus plantarum ZJ316   1 1
No Yes Lactobacillus plantarum subsp. plantarum P-8   2 2
No Yes Lactobacillus plantarum WCFS1   2 2
No Yes Lactobacillus brevis KB290   2 2
No Yes Pediococcus pentosaceus SL4   1 1
No Yes Lactococcus lactis subsp. cremoris A76   1 1
No Yes Streptococcus iniae SF1   1 1
No Yes Streptococcus pyogenes HSC5   2 2
No Yes Streptococcus pyogenes MGAS1882   1 1
No Yes Streptococcus pyogenes MGAS10750   2 2
No Yes Streptococcus pyogenes MGAS10270   3 3
No Yes Streptococcus pyogenes MGAS9429   2 2
No Yes Streptococcus pyogenes MGAS6180   1 1
No Yes Streptococcus pyogenes NZ131   1 1
No Yes Streptococcus pyogenes MGAS8232   4 4
No Yes Streptococcus pyogenes MGAS315   3 3
No Yes Streptococcus pyogenes SSI-1   3 3
No Yes Streptococcus pyogenes M1 GAS   1 1
No Yes Streptococcus pneumoniae SPNA45   1 1
No Yes Streptococcus pneumoniae gamPNI0373   1 1
No Yes Streptococcus pneumoniae ATCC 700669   1 1
No Yes Streptococcus pneumoniae JJA   1 1
No Yes Streptococcus pneumoniae 70585   1 1
No Yes Streptococcus pneumoniae 670-6B   2 2
No Yes Streptococcus agalactiae ILRI005   1 1
No Yes Streptococcus agalactiae 2603V/R   1 1
No Yes Streptococcus salivarius JIM8777   1 1
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Listeria monocytogenes EGD sequence   1 1
No Yes Listeria monocytogenes M7   3 3
No Yes Listeria monocytogenes J1-220   2 2
No Yes Listeria monocytogenes J1816   1 1
No Yes Listeria monocytogenes SLCC5850   1 1
No Yes Listeria monocytogenes L99   3 3
No Yes Listeria monocytogenes HCC23   3 3
No Yes Listeria monocytogenes J0161   2 2
No Yes Listeria monocytogenes EGD-e   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum sequencing   3 3
No Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946   2 2
No Yes Bacillus amyloliquefaciens Y2   1 1
No Yes Bacillus amyloliquefaciens XH7   1 1
No Yes Bacillus amyloliquefaciens LL3   4 4
No Yes Bacillus amyloliquefaciens TA208   2 2
No Yes Bacillus amyloliquefaciens DSM 7   2 2
No Yes Bacillus subtilis XF-1   1 1
No Yes Bacillus subtilis QB928   1 1
No Yes Bacillus subtilis BSn5   1 1
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   1 1
No Yes Bacillus subtilis subsp. natto BEST195   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   6 6
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   2 2
No Yes Bacillus thuringiensis Bt407   8 8
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   2 2
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   3 3
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus NC7401   3 3
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Staphylococcus aureus subsp. aureus MSHR1132   1 1
No Yes Staphylococcus aureus CA-347   1 1
No Yes Staphylococcus aureus Bmb9393   2 2
No Yes Staphylococcus aureus M1   2 2
No Yes Staphylococcus aureus subsp. aureus Z172   2 2
No Yes Staphylococcus aureus subsp. aureus HO 5096 0412   1 1
No Yes Staphylococcus aureus subsp. aureus T0131   1 1
No Yes Staphylococcus aureus subsp. aureus TW20   3 3
No Yes Staphylococcus aureus subsp. aureus 55/2053   1 1
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   1 1
No Yes Staphylococcus aureus subsp. aureus S0385   2 2
No Yes Staphylococcus aureus subsp. aureus str. Newman   3 3
No Yes Staphylococcus aureus subsp. aureus JH9   2 2
No Yes Staphylococcus aureus subsp. aureus MSSA476   1 1
No Yes Staphylococcus aureus subsp. aureus COL   1 1
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   2 2
No Yes Salinibacter ruber DSM 13855   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Fusobacterium nucleatum subsp. vincentii 3_1_36A2   2 2
No Yes Campylobacter jejuni Waterborne C.jejuni Outbreak   1 1
No Yes Campylobacter jejuni RM1221   2 2
No Yes Campylobacter jejuni subsp. jejuni 00-2544   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2538   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2426   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2425   1 1
No Yes Campylobacter jejuni subsp. jejuni S3   2 2
No Yes Campylobacter jejuni subsp. jejuni IA3902   1 1
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanobacterium sp. SWAN-1   2 2
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   3 3
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   3 3
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes NCBI 2017_08 genome   18029 18027
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   111 111
No Yes Termite Protist Endosymbiont Community (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   2794 2793
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   26 26
No Yes NCBI plasmid sequences (Plasmids)   21 21
No Yes NCBI viral sequences (Viral)   116 116
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   9 9
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   39 39
No Yes TargetDB (Targets)   14 14
No Yes UniProt viral sequences (Viral)   63 63

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