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  Home > Genomes > Staphylothermus marinus F1 > TrmB C-terminal domain-like domains


TrmB C-terminal domain-like superfamily domain assignments
in
Staphylothermus marinus F1

Network of domain occurrence in all genomes

Assignment details

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Staphylothermus marinus F1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|126464999|ref|YP_001040108.1|   1.96e-19   55-142   TrmB C-terminal domain-like  

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View all assignments containing a TrmB C-terminal domain-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   1940 1940
No Yes Candidatus Korarchaeum cryptofilum OPF8   1 1
No Yes Staphylothermus hellenicus DSM 12710   1 1
No Yes Staphylothermus marinus F1   1 1
No Yes Sulfolobus acidocaldarius DSM 639   1 1
No Yes Thermofilum sp. 1910b   3 3
No Yes Thermofilum pendens Hrk 5   4 4
No Yes Caldivirga maquilingensis IC-167   2 2
No Yes halophilic archaeon DL31   1 1
No Yes Thermococcus sp. 4557   3 3
No Yes Thermococcus onnurineus NA1   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermococcus gammatolerans EJ3   2 2
No Yes Thermococcus sibiricus MM 739   3 3
No Yes Thermococcus barophilus MP   4 4
No Yes Pyrococcus sp. ST04   3 3
No Yes Pyrococcus yayanosii CH1   1 1
No Yes Pyrococcus horikoshii OT3   3 3
No Yes Pyrococcus abyssi GE5   1 1
No Yes Pyrococcus furiosus COM1   2 2
No Yes Thermoplasma volcanium GSS1   2 2
No Yes Thermoplasma acidophilum DSM 1728   3 3
No Yes Picrophilus torridus DSM 9790   3 3
No Yes Salinarchaeum sp. Harcht-Bsk1   6 6
No Yes Halopiger xanaduensis SH-6   4 4
No Yes Haloterrigena turkmenica DSM 5511   4 4
No Yes Natrinema sp. J7-2   1 1
No Yes Natrialba magadii ATCC 43099   2 2
No Yes Halorubrum lacusprofundi ATCC 49239   3 3
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Halogeometricum borinquense DSM 11551   3 3
No Yes Haloferax mediterranei ATCC 33500   3 3
No Yes Haloferax volcanii DS2   5 5
No Yes Halomicrobium mukohataei DSM 12286   6 6
No Yes Halorhabdus utahensis DSM 12940   3 3
No Yes Haloarcula hispanica ATCC 33960   5 5
No Yes Haloarcula marismortui ATCC 43049   5 5
No Yes Halalkalicoccus jeotgali B3   2 2
No Yes Halobacterium salinarum R1   1 1
No Yes Halobacterium sp. NRC-1   1 1
No Yes Methanotorris igneus Kol 5   1 1
No Yes Methanocaldococcus fervens AG86   1 1
No Yes Methanocaldococcus vulcanius M7   1 1
No Yes methanocaldococcus infernus ME   1 1
No Yes Methanocaldococcus jannaschii DSM 2661   1 1
No Yes Methanothermococcus okinawensis IH1   1 1
No Yes Methanococcus maripaludis C5   1 1
No Yes Sulfolobus acidocaldarius SUSAZ   1 1
No Yes Sulfolobus acidocaldarius Ron12/I   1 1
No Yes Sulfolobus acidocaldarius N8   1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus sp. CL1   2 2
No Yes Thermococcus litoralis DSM 5473   4 4
No Yes Pyrococcus sp. NA2   1 1
No Yes Pyrococcus furiosus DSM 3638   2 2
No Yes Ferroplasma acidarmanus fer1   2 2
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Natronococcus occultus SP4   2 2
No Yes Natronobacterium gregoryi SP2   1 1
No Yes Haloquadratum walsbyi C23   1 1
No Yes Halorhabdus tiamatea SARL4B   6 6
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes Haloarcula hispanica N601   5 5
No Yes Methanococcus maripaludis X1   1 1
No Yes Methanococcus maripaludis C6   1 1
No Yes Methanococcus maripaludis C7   1 1
No Yes Methanococcus maripaludis S2   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   4 4
No Yes NCBI 2017_08 genome   873 873
No Yes STRING v9.0.5 (STRING)   57 57
No Yes Uniprot 2018_03 genome   759 759
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   2 2
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   3 3
No Yes TargetDB (Targets)   12 12

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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