SUPERFAMILY 1.75 HMM library and genome assignments server

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EreA/ChaN-like superfamily domain assignments
in
Bordetella parapertussis 12822


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Select to display   Genome       Domains   Proteins
No Yes ALL   45422 45422
No Yes Adineta vaga   2 2
No Yes Acropora digitifera v1.0   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Schizophyllum commune   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   2 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   5 5
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   1 1
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   1 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 3
No Yes Fusarium verticillioides 7600   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Ajellomyces dermatitidis SLH14081   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Uncinocarpus reesii 1704   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Selaginella moellendorffii   5 5
No Yes Pinus taeda Loblolly pine 4 4
No Yes Eucalyptus grandis v201 Rose gum 2 2
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 1 1
No Yes Thellungiella halophila v173   2 2
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   3 3
No Yes Arabidopsis lyrata Lyrate rockcress 5 5
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes Carica papaya Papaya 2 2
No Yes Medicago truncatula Barrel medic 1 1
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 2 2
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 1 1
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 3 3
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 2 2
No Yes Actinidia chinensis Hongyang   2 2
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum urartu 22   2 2
No Yes Triticum aestivum 22 Bread wheat 7 7
No Yes Aegilops tauschii 22   2 2
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Oryza barthii 22 African wild rice 5 5
No Yes Oryza meridionalis 22   8 8
No Yes Oryza glumaepatula 22   7 7
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   11 11
No Yes Oryza nivara 22   6 6
No Yes Oryza brachyantha 22 Malo sina 2 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 3 3
No Yes Panicum virgatum v202 Switchgrass 6 6
No Yes Setaria italica v164 Foxtail millet 2 2
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 2 2
No Yes Musa balbisiana Balbis banana 3 3
No Yes Musa acuminata 22 Wild Malaysian banana 3 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   3 3
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Chlorella variabilis sp. NC64A   2 2
No Yes Chlorella vulgaris   2 2
No Yes Volvox carteri f. nagariensis   5 2
No Yes Volvox carteri v199   5 2
No Yes Chlamydomonas reinhardtii 4.0   4 2
No Yes Cyanidioschyzon merolae strain 10D 22   3 3
No Yes Cyanidioschyzon merolae   3 3
No Yes Porphyridium purpureum 02_2012   3 3
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Cyanophora paradoxa   5 5
No Yes Ectocarpus siliculosus   2 2
No Yes Aureococcus anophagefferens   4 4
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   3 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   2 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   2 2
No Yes Fragilariopsis cylindrus   5 5
No Yes Thalassiosira pseudonana CCMP1335   3 3
No Yes Symbiodinium minutum clade B1 v1.2   6 6
No Yes Naegleria gruberi   1 1
No Yes Guillardia theta CCMP2712 v1.0   2 2
No Yes Emiliania huxleyi CCMP1516   7 7
No Yes Leptolyngbya sp. PCC 7376   2 2
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Microcoleus sp. PCC 7113   2 2
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Eggerthella sp. YY7918   1 1
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Blastococcus saxobsidens DD2   2 2
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Stackebrandtia nassauensis DSM 44728   8 8
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   2 2
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   2 2
No Yes Streptomyces griseus subsp. griseus NBRC 13350   2 2
No Yes Streptomyces bingchenggensis BCW-1   2 2
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces avermitilis MA-4680   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   3 3
No Yes Amycolatopsis mediterranei U32   2 2
No Yes Kribbella flavida DSM 17836   3 3
No Yes Salinispora arenicola CNS-205   2 2
No Yes Salinispora tropica CNB-440   2 2
No Yes Verrucosispora maris AB-18-032   2 2
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Actinoplanes sp. N902-109   2 2
No Yes Actinoplanes sp. SE50/110   2 2
No Yes Actinoplanes missouriensis 431   2 2
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia cyriacigeorgica GUH-2   2 2
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Mycobacterium vanbaalenii PYR-1   2 2
No Yes Mycobacterium canettii CIPT 140010059   1 1
No Yes Mycobacterium africanum GM041182   1 1
No Yes Mycobacterium tuberculosis KZN 1435   1 1
No Yes Mycobacterium tuberculosis   1 1
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   1 1
No Yes Mycobacterium rhodesiae NBB3   1 1
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Deinococcus gobiensis I-0   2 2
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Deinococcus radiodurans R1   2 2
No Yes Finegoldia magna ATCC 29328   1 1
No Yes Acidaminococcus intestini RyC-MR95   1 1
No Yes Megamonas hypermegale   1 1
No Yes Symbiobacterium thermophilum IAM 14863   2 2
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Roseburia hominis A2-183   1 1
No Yes Roseburia intestinalis   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Butyrivibrio fibrisolvens   1 1
No Yes Alkaliphilus oremlandii OhILAs   1 1
No Yes Clostridium sp. BNL1100   2 2
No Yes Clostridium ljungdahlii DSM 13528   1 1
No Yes Halothermothrix orenii H 168   2 2
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus sp. JDR-2   1 1
No Yes Paenibacillus mucilaginosus 3016   4 4
No Yes Paenibacillus polymyxa M1   3 3
No Yes Solibacillus silvestris StLB046   1 1
No Yes Geobacillus thermoglucosidasius C56-YS93   2 2
No Yes Lysinibacillus sphaericus C3-41   2 2
No Yes Geobacillus sp. GHH01   1 1
No Yes Geobacillus sp. WCH70   1 1
No Yes Geobacillus thermodenitrificans NG80-2   1 1
No Yes Bacillus sp. 1NLA3E   2 2
No Yes Bacillus atrophaeus 1942   1 1
No Yes Bacillus subtilis subsp. subtilis str. 168   1 1
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus weihenstephanensis KBAB4   2 2
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus pseudofirmus OF4   1 1
No Yes Bacillus clausii KSM-K16   2 2
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Bacillus megaterium DSM 319   2 2
No Yes Candidatus Cloacamonas acidaminovorans   1 1
No Yes Gemmatimonas aurantiaca T-27   2 2
No Yes Chlorobium limicola DSM 245   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   2 2
No Yes Saprospira grandis str. Lewin   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Candidatus Amoebophilus asiaticus 5a2   1 1
No Yes Belliella baltica DSM 15883   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Marivirga tractuosa DSM 4126   3 3
No Yes Fibrella aestuarina   2 2
No Yes Leadbetterella byssophila DSM 17132   2 2
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Runella slithyformis DSM 19594   2 2
No Yes Tannerella forsythia ATCC 43037   1 1
No Yes Odoribacter splanchnicus DSM 20712   2 2
No Yes Bacteroides helcogenes P 36-108   2 2
No Yes Bacteroides thetaiotaomicron VPI-5482   1 1
No Yes Bacteroides fragilis YCH46   4 4
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Fluviicola taffensis DSM 16823   1 1
No Yes Zunongwangia profunda SM-A87   2 2
No Yes Gramella forsetii KT0803   1 1
No Yes Maribacter sp. HTCC2170   1 1
No Yes Zobellia galactanivorans   1 1
No Yes Muricauda ruestringensis DSM 13258   1 1
No Yes Cellulophaga lytica DSM 7489   2 2
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Capnocytophaga canimorsus Cc5   1 1
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Flavobacterium indicum GPTSA100-9   2 2
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Candidatus Protochlamydia amoebophila UWE25   3 3
No Yes Methylacidiphilum infernorum V4   1 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   1 1
No Yes Leptospira interrogans serovar Lai str. IPAV   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Treponema brennaborense DSM 12168   1 1
No Yes Treponema denticola ATCC 35405   1 1
No Yes Spirochaeta africana DSM 8902   1 1
No Yes Thermodesulfatator indicus DSM 15286   1 1
No Yes Thermodesulfobacterium sp. OPB45   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Sulfurihydrogenibium sp. YO3AOP1   1 1
No Yes Sulfurihydrogenibium azorense Az-Fu1   1 1
No Yes Persephonella marina EX-H1   1 1
No Yes Thermocrinis albus DSM 14484   1 1
No Yes Aquifex aeolicus VF5   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   3 3
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Ilyobacter polytropus DSM 2926   1 1
No Yes Bacteriovorax marinus SJ   3 3
No Yes Bdellovibrio bacteriovorus HD100   3 3
No Yes Campylobacter curvus 525.92   1 1
No Yes Desulfarculus baarsii DSM 2075   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Syntrophobacter fumaroxidans MPOB   3 3
No Yes Desulfurivibrio alkaliphilus AHT2   2 2
No Yes Desulfobacterium autotrophicum HRM2   1 1
No Yes Desulfococcus oleovorans Hxd3   1 1
No Yes Desulfohalobium retbaense DSM 5692   1 1
No Yes Desulfomicrobium baculatum DSM 4028   1 1
No Yes Desulfovibrio piezophilus   1 1
No Yes Desulfovibrio aespoeensis Aspo-2   1 1
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Desulfovibrio alaskensis G20   1 1
No Yes Desulfovibrio vulgaris subsp. vulgaris DP4   1 1
No Yes Desulfovibrio salexigens DSM 2638   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   2 2
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter sp. M21   4 4
No Yes Geobacter uraniireducens Rf4   2 2
No Yes Geobacter bemidjiensis Bem   3 3
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Haliangium ochraceum DSM 14365   3 2
No Yes Sorangium cellulosum 'So ce 56'   1 1
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Stigmatella aurantiaca DW4/3-1   3 3
No Yes Corallococcus coralloides DSM 2259   6 6
No Yes Myxococcus xanthus DK 1622   7 7
No Yes Myxococcus fulvus HW-1   5 5
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Aromatoleum aromaticum EbN1   2 2
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   2 2
No Yes Thiomonas arsenitoxydans   1 1
No Yes Thiomonas intermedia K12   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   3 3
No Yes Cupriavidus taiwanensis LMG 19424   2 2
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   2 2
No Yes Ralstonia eutropha H16   2 2
No Yes Ralstonia pickettii 12D   2 2
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Ramlibacter tataouinensis TTB310   2 2
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Polaromonas sp. JS666   2 2
No Yes Polaromonas naphthalenivorans CJ2   2 2
No Yes Variovorax paradoxus S110   2 2
No Yes Rhodoferax ferrireducens T118   1 1
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Acidovorax sp. JS42   1 1
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Comamonas testosteroni CNB-2   1 1
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Taylorella equigenitalis MCE9   1 1
No Yes Nitrosospira multiformis ATCC 25196   2 2
No Yes Nitrosomonas sp. Is79A3   1 1
No Yes Nitrosomonas eutropha C91   1 1
No Yes Nitrosomonas europaea ATCC 19718   1 1
No Yes Methylovorus sp. MP688   1 1
No Yes Methylovorus glucosetrophus SIP3-4   1 1
No Yes Magnetococcus marinus MC-1   1 1
No Yes Caulobacter sp. K31   2 2
No Yes Caulobacter crescentus NA1000   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Maricaulis maris MCS10   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Pseudovibrio sp. FO-BEG1   1 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Roseobacter litoralis Och 149   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Tistrella mobilis KA081020-065   2 2
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Azospirillum lipoferum 4B   2 2
No Yes Azospirillum sp. B510   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Methylobacterium sp. 4-46   2 2
No Yes Methylobacterium nodulans ORS 2060   2 2
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Mesorhizobium sp. BNC1   1 1
No Yes Mesorhizobium opportunistum WSM2075   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Methylocella silvestris BL2   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Hyphomicrobium sp. MC1   2 2
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Haemophilus parasuis SH0165   1 1
No Yes Oceanimonas sp. GK1   1 1
No Yes Aeromonas veronii B565   2 2
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   2 2
No Yes Aliivibrio salmonicida LFI1238   1 1
No Yes Vibrio fischeri MJ11   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio harveyi ATCC BAA-1116   2 2
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Vibrio anguillarum 775   1 1
No Yes Vibrio furnissii NCTC 11218   1 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Photobacterium profundum SS9   1 1
No Yes Psychromonas ingrahamii 37   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Glaciecola nitratireducens FR1064   1 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Marinobacter sp. BSs20148   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Halomonas elongata DSM 2581   1 1
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Stenotrophomonas maltophilia K279a   2 2
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Thioalkalivibrio sp. K90mix   1 1
No Yes Halorhodospira halophila SL1   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Thiocystis violascens DSM 198   1 1
No Yes Nitrosococcus watsonii C-113   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Legionella longbeachae NSW150   2 2
No Yes Photorhabdus asymbiotica   2 2
No Yes Photorhabdus luminescens subsp. laumondii TTO1   2 2
No Yes Xenorhabdus bovienii SS-2004   1 1
No Yes Xenorhabdus nematophila ATCC 19061   2 2
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Proteus mirabilis HI4320   2 2
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Edwardsiella tarda EIB202   1 1
No Yes Serratia sp. AS12   1 1
No Yes Serratia plymuthica AS9   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Azotobacter vinelandii DJ   2 2
No Yes Pseudomonas sp. TKP   2 2
No Yes Pseudomonas sp. UW4   3 2
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   2 2
No Yes Pseudomonas entomophila L48   2 2
No Yes Pseudomonas syringae pv. tomato str. DC3000   3 2
No Yes Pseudomonas stutzeri A1501   2 2
No Yes Pseudomonas putida F1   2 2
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas mendocina ymp   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Pseudomonas sp. VLB120   2 2
No Yes Methylophaga sp. JAM1   1 1
No Yes Thiomicrospira crunogena XCL-2   2 2
No Yes Thioalkalimicrobium cyclicum ALM1   1 1
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosphaerula palustris E1-9c   1 1
No Yes Natrinema sp. J7-2   1 1
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Halobacterium salinarum R1   1 1
No Yes Halobacterium sp. NRC-1   1 1
No Yes Aciduliprofundum sp. MAR08-339   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 4 4
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 2
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7425   2 2
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   2 2
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Amycolatopsis mediterranei RB   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Amycolatopsis orientalis HCCB10007   3 3
No Yes Actinoplanes friuliensis DSM 7358   4 4
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   3 3
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium canettii CIPT 140070017   1 1
No Yes Mycobacterium canettii CIPT 140060008   1 1
No Yes Mycobacterium canettii CIPT 140070008   1 1
No Yes Mycobacterium canettii CIPT 140070010   1 1
No Yes Mycobacterium tuberculosis EAI5/NITR206   1 1
No Yes Mycobacterium tuberculosis EAI5   1 1
No Yes Mycobacterium tuberculosis CAS/NITR204   1 1
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   1 1
No Yes Mycobacterium tuberculosis UT205   1 1
No Yes Mycobacterium tuberculosis RGTB327   1 1
No Yes Mycobacterium tuberculosis CTRI-2   1 1
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   1 1
No Yes Mycobacterium tuberculosis KZN 605   1 1
No Yes Mycobacterium tuberculosis KZN 4207   1 1
No Yes Mycobacterium tuberculosis CCDC5180   1 1
No Yes Mycobacterium tuberculosis CCDC5079   1 1
No Yes Mycobacterium tuberculosis CCDC5079   1 1
No Yes Mycobacterium tuberculosis H37Ra   1 1
No Yes Mycobacterium tuberculosis str. Haarlem   1 1
No Yes Mycobacterium tuberculosis F11   1 1
No Yes Mycobacterium tuberculosis H37Rv   1 1
No Yes Mycobacterium tuberculosis CDC1551   1 1
No Yes Mycobacterium bovis AF2122/97   2 2
No Yes Mycobacterium bovis BCG str. Korea 1168P   1 1
No Yes Mycobacterium bovis BCG str. Mexico   1 1
No Yes Mycobacterium bovis BCG str. Tokyo 172   1 1
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Corynebacterium halotolerans YIM 70093 = DSM 44683   1 1
No Yes Chthonomonas calidirosea T49   1 1
No Yes Deinococcus peraridilitoris DSM 19664   2 2
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Desulfotomaculum gibsoniae DSM 7213   1 1
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium autoethanogenum DSM 10061   1 1
No Yes Paenibacillus sp. Y412MC10   2 2
No Yes Paenibacillus mucilaginosus KNP414   4 4
No Yes Paenibacillus mucilaginosus K02   4 4
No Yes Paenibacillus polymyxa SC2   3 3
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus subtilis PY79   1 1
No Yes Bacillus subtilis XF-1   1 1
No Yes Bacillus subtilis QB928   1 1
No Yes Bacillus subtilis BSn5   1 1
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   1 1
No Yes Bacillus subtilis subsp. subtilis str. BSP1   1 1
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   1 1
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   1 1
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   1 1
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Bacillus subtilis subsp. natto BEST195   1 1
No Yes Bacillus infantis NRRL B-14911   1 1
No Yes Bacillus toyonensis BCT-7112   2 2
No Yes Bacillus thuringiensis HD-771   2 2
No Yes Bacillus thuringiensis HD-789   2 2
No Yes Bacillus thuringiensis MC28   4 4
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   2 2
No Yes Bacillus thuringiensis Bt407   2 2
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   2 2
No Yes Bacillus thuringiensis BMB171   3 3
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   2 2
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   2 2
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   3 3
No Yes Bacillus cereus G9842   2 2
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   2 2
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   3 3
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   3 3
No Yes Bacillus anthracis str. CDC 684   3 3
No Yes Bacillus anthracis str. Ames   1 1
No Yes Bacillus megaterium WSH-002   1 1
No Yes Bacillus megaterium QM B1551   2 2
No Yes Chlorobium phaeobacteroides BS1   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Echinicola vietnamensis DSM 17526   2 2
No Yes Bacteroides fragilis 638R   4 4
No Yes Bacteroides fragilis NCTC 9343   4 4
No Yes Psychroflexus torquis ATCC 700755   3 3
No Yes Riemerella anatipestifer RA-CH-2   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   1 1
No Yes Leptospira interrogans serovar Lai str. 56601   1 1
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Bdellovibrio exovorus JSS   2 2
No Yes Bdellovibrio bacteriovorus str. Tiberius   3 3
No Yes Campylobacter jejuni RM1221   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2544   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2538   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2426   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2425   1 1
No Yes Campylobacter jejuni subsp. jejuni PT14   1 1
No Yes Campylobacter jejuni subsp. jejuni ICDCCJ07001   1 1
No Yes Campylobacter jejuni subsp. jejuni S3   1 1
No Yes Campylobacter jejuni subsp. jejuni IA3902   1 1
No Yes Campylobacter jejuni subsp. jejuni NCTC 11168-BN148   1 1
No Yes Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819   1 1
No Yes Campylobacter coli 76339   1 1
No Yes Campylobacter coli 15-537360   1 1
No Yes Campylobacter coli CVM N29710   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Desulfobacula toluolica Tol2   1 1
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   2 2
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. 'Miyazaki F'   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   1 1
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   1 1
No Yes Desulfovibrio desulfuricans ND132   1 1
No Yes Geobacter sp. M18   3 3
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Sorangium cellulosum So0157-2   3 3
No Yes Anaeromyxobacter sp. K   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-C   1 1
No Yes Myxococcus stipitatus DSM 14675   6 6
No Yes Ralstonia pickettii 12J   2 2
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   2 2
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Variovorax paradoxus B4   3 3
No Yes Variovorax paradoxus EPS   1 1
No Yes Taylorella equigenitalis 14/56   1 1
No Yes Taylorella equigenitalis ATCC 35865   1 1
No Yes Nitrosomonas sp. AL212   1 1
No Yes Caulobacter crescentus CB15   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Mesorhizobium australicum WSM2073   1 1
No Yes Hyphomicrobium denitrificans 1NES1   1 1
No Yes Bibersteinia trehalosi USDA-ARS-USMARC-192   1 1
No Yes Mannheimia haemolytica USMARC_2286   1 1
No Yes Mannheimia haemolytica M42548   1 1
No Yes Mannheimia haemolytica D174   1 1
No Yes Mannheimia haemolytica D171   1 1
No Yes Mannheimia haemolytica D153   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   1 1
No Yes Pasteurella multocida subsp. multocida str. HN06   1 1
No Yes Actinobacillus suis H91-0380   1 1
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Vibrio fischeri ES114   1 1
No Yes Vibrio sp. EJY3   3 3
No Yes Vibrio parahaemolyticus BB22OP   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio anguillarum Listonella anguillarum M3   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Vibrio vulnificus CMCP6   2 2
No Yes Vibrio vulnificus YJ016   2 2
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   1 1
No Yes Stenotrophomonas maltophilia D457   2 2
No Yes Stenotrophomonas maltophilia JV3   2 2
No Yes Stenotrophomonas maltophilia R551-3   2 2
No Yes Thioalkalivibrio nitratireducens DSM 14787   1 1
No Yes Thioflavicoccus mobilis 8321   1 1
No Yes Proteus mirabilis BB2000   2 2
No Yes Edwardsiella tarda C07-087   1 1
No Yes Edwardsiella tarda FL6-60   1 1
No Yes Serratia sp. AS13   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens FGI94   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Shigella boydii Sb227   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli UM146   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli UTI89   1 1
No Yes Azotobacter vinelandii CA6   2 2
No Yes Azotobacter vinelandii CA   2 2
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 1
No Yes Pseudomonas syringae pv. syringae B728a   2 1
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 10701   2 2
No Yes Pseudomonas stutzeri DSM 4166   2 2
No Yes Pseudomonas stutzeri RCH2   2 2
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   2 2
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida NBRC 14164   2 2
No Yes Pseudomonas putida DOT-T1E   3 3
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas putida ND6   2 2
No Yes Pseudomonas putida KT2440   2 2
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   2 2
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   2 2
No Yes Pseudomonas fluorescens R124   3 2
No Yes Pseudomonas fluorescens Pf0-1   2 2
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Pseudomonas mendocina NK-01   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   2 2
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   2 2
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   1 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   2 2
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes 1_050719N (meta-genome)   14 14
No Yes 1_Upper_euphotic (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   9 9
No Yes 3_050719R (meta-genome)   6 6
No Yes 4_050719Q (meta-genome)   8 8
No Yes 5_050719P (meta-genome)   8 8
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   2 2
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   9 9
No Yes Bath Hot Springs, filamentous community (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   9 9
No Yes Combined (meta-genome)   23 23
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   16 16
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   9 9
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   7 6
No Yes Dump bottom (Dump bottom) (meta-genome)   27 27
No Yes Dump top (Dump top) (meta-genome)   32 32
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   12 12
No Yes Fungus garden combined (combined) (meta-genome)   5 5
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   12 12
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   16 16
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP10 from Narrow Gauge (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   14 13
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   19 19
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   41 41
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   12 12
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   15 15
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   4 4
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   11 11
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   16 16
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   9 7
No Yes NCBI 2017_08 genome   30828 30248
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   14 14
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   2 2
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   6 6
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   3 3
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   11 11
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   6 6
No Yes Sludge/US, Jazz Assembly (meta-genome)   5 5
No Yes Sludge/US, Phrap Assembly (meta-genome)   9 9
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   36 36
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   42 42
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   98 98
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   68 68
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   72 72
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   26 26
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   18 18
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   389 383
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   6 6
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   40 40
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   9 8
No Yes Uniprot 2018_03 genome   11135 10840
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   4 4
No Yes Global Ocean Sampling Expedition (GOS)   100 100
No Yes NCBI plasmid sequences (Plasmids)   37 37
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   19 19
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   34 30
No Yes TargetDB (Targets)   40 40

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