SUPERFAMILY 1.75 HMM library and genome assignments server

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Dhaf3308-like superfamily domain assignments
in
Vibrio fischeri ES114


No domain assignments for these genomes.


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View all assignments containing a Dhaf3308-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   5739 5739
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Cryptobacterium curtum DSM 15641   1 1
No Yes Eggerthella lenta DSM 2243   1 1
No Yes Slackia heliotrinireducens DSM 20476   1 1
No Yes Atopobium parvulum DSM 20469   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Kribbella flavida DSM 17836   1 1
No Yes Propionibacterium propionicum F0230a   2 2
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus opacus B4   1 1
No Yes Actinomyces sp. F0330   1 1
No Yes Natranaerobius thermophilus JW/NM-WN-LF   1 1
No Yes Symbiobacterium thermophilum IAM 14863   2 2
No Yes Ethanoligenens harbinense YUAN-3   2 2
No Yes Oscillibacter valericigenes Sjm18-20   1 1
No Yes Desulfosporosinus orientis DSM 765   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Desulfitobacterium hafniense Y51   2 2
No Yes Desulfitobacterium dehalogenans ATCC 51507   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   1 1
No Yes Desulfotomaculum ruminis DSM 2154   1 1
No Yes Acetobacterium woodii DSM 1030   3 3
No Yes Clostridium difficile 630   1 1
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Syntrophomonas wolfei subsp. wolfei str. Goettingen   3 3
No Yes Alkaliphilus oremlandii OhILAs   2 2
No Yes Clostridium ljungdahlii DSM 13528   3 3
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Thermodesulfobium narugense DSM 14796   1 1
No Yes Moorella thermoacetica ATCC 39073   4 4
No Yes Acetohalobium arabaticum DSM 5501   1 1
No Yes Thermanaerovibrio acidaminovorans DSM 6589   1 1
No Yes Anaerobaculum mobile DSM 13181   2 2
No Yes Spirochaeta smaragdinae DSM 11293   4 4
No Yes Sphaerochaeta pleomorpha str. Grapes   1 1
No Yes Treponema azotonutricium ZAS-9   1 1
No Yes Treponema primitia ZAS-2   1 1
No Yes Thermodesulfatator indicus DSM 15286   1 1
No Yes Thermodesulfobacterium sp. OPB45   1 1
No Yes Calditerrivibrio nitroreducens DSM 19672   1 1
No Yes Deferribacter desulfuricans SSM1   1 1
No Yes Marinitoga piezophila KA3   1 1
No Yes Petrotoga mobilis SJ95   1 1
No Yes Kosmotoga olearia TBF 19.5.1   1 1
No Yes Thermosipho melanesiensis BI429   1 1
No Yes Thermosipho africanus TCF52B   1 1
No Yes Caldisericum exile AZM16c01   2 2
No Yes Sulfurospirillum barnesii SES-3   1 1
No Yes Campylobacter curvus 525.92   1 1
No Yes Wolinella succinogenes DSM 1740   1 1
No Yes Desulfarculus baarsii DSM 2075   1 1
No Yes Syntrophus aciditrophicus SB   3 3
No Yes Desulfomonile tiedjei DSM 6799   2 2
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Desulfotalea psychrophila LSv54   2 2
No Yes Desulfatibacillum alkenivorans AK-01   1 1
No Yes Desulfobacterium autotrophicum HRM2   3 3
No Yes Desulfococcus oleovorans Hxd3   2 2
No Yes Desulfohalobium retbaense DSM 5692   2 2
No Yes Desulfovibrio piezophilus   1 1
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Desulfovibrio alaskensis G20   1 1
No Yes Desulfovibrio salexigens DSM 2638   1 1
No Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Hippea maritima DSM 10411   2 2
No Yes Pelobacter propionicus DSM 2379   4 4
No Yes Pelobacter carbinolicus DSM 2380   4 4
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Magnetococcus marinus MC-1   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Rhodospirillum photometricum DSM 122   1 1
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Azospirillum brasilense Sp245   2 2
No Yes Teredinibacter turnerae T7901   1 1
No Yes Methylomonas methanica MC09   1 1
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Serratia sp. ATCC 39006   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Acidilobus saccharovorans 345-15   1 1
No Yes Pyrolobus fumarii 1A   1 1
No Yes Hyperthermus butylicus DSM 5456   1 1
No Yes Ignicoccus hospitalis KIN4/I   1 1
No Yes Staphylothermus hellenicus DSM 12710   1 1
No Yes Staphylothermus marinus F1   1 1
No Yes Metallosphaera cuprina Ar-4   1 1
No Yes Metallosphaera sedula DSM 5348   1 1
No Yes Acidianus hospitalis W1   2 2
No Yes Sulfolobus tokodaii str. 7   2 2
No Yes Sulfolobus islandicus Y.N.15.51   1 1
No Yes Sulfolobus solfataricus P2   1 1
No Yes Sulfolobus acidocaldarius DSM 639   1 1
No Yes Thermofilum pendens Hrk 5   1 1
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes Vulcanisaeta distributa DSM 14429   2 2
No Yes Caldivirga maquilingensis IC-167   1 1
No Yes Pyrobaculum arsenaticum DSM 13514   1 1
No Yes Pyrobaculum oguniense TE7   1 1
No Yes Thermoproteus neutrophilus V24Sta   1 1
No Yes Pyrobaculum islandicum DSM 4184   1 1
No Yes Thermoproteus tenax Kra 1   1 1
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Methanohalophilus mahii DSM 5219   1 1
No Yes Methanoregula boonei 6A8   2 2
No Yes Methanospirillum hungatei JF-1   3 3
No Yes Methanocorpusculum labreanum Z   1 1
No Yes Methanoplanus petrolearius DSM 11571   1 1
No Yes Methanoculleus bourgensis MS2   2 2
No Yes Methanoculleus marisnigri JR1   1 1
No Yes Methanopyrus kandleri AV19   1 1
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus onnurineus NA1   2 2
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Thermococcus sibiricus MM 739   2 2
No Yes Thermococcus barophilus MP   1 1
No Yes Pyrococcus sp. ST04   1 1
No Yes Pyrococcus yayanosii CH1   2 2
No Yes Pyrococcus horikoshii OT3   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Methanotorris igneus Kol 5   1 1
No Yes Methanocaldococcus sp. FS406-22   2 2
No Yes Methanocaldococcus fervens AG86   3 3
No Yes Methanocaldococcus vulcanius M7   3 3
No Yes methanocaldococcus infernus ME   2 2
No Yes Methanocaldococcus jannaschii DSM 2661   1 1
No Yes Methanothermococcus okinawensis IH1   1 1
No Yes Methanococcus aeolicus Nankai-3   1 1
No Yes Methanococcus maripaludis C5   1 1
No Yes Methanococcus voltae A3   2 2
No Yes Methanococcus vannielii SB   1 1
No Yes Methanothermus fervidus DSM 2088   2 2
No Yes Methanothermobacter marburgensis str. Marburg   2 2
No Yes Methanothermobacter thermautotrophicus str. Delta H   2 2
No Yes Complete genome sequence of Methanobacterium sp. Mb1   1 1
No Yes Aciduliprofundum sp. MAR08-339   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Gordonibacter pamelaeae 7-10-1-b   1 1
No Yes Adlercreutzia equolifaciens DSM 19450   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Actinomyces odontolyticus ATCC 17982   1 1
No Yes Actinomyces viscosus C505   1 1
No Yes Clostridium acidurici 9a   3 3
No Yes Desulfosporosinus meridiei DSM 13257   1 1
No Yes Desulfitobacterium hafniense DCB-2   2 2
No Yes Desulfotomaculum gibsoniae DSM 7213   5 5
No Yes Clostridium difficile BI1   1 1
No Yes Clostridium difficile R20291   1 1
No Yes Clostridium difficile CD196   1 1
No Yes Clostridium autoethanogenum DSM 10061   2 2
No Yes Clostridium botulinum E3 str. Alaska E43   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Thermacetogenium phaeum DSM 12270   4 4
No Yes Halobacteroides halobius DSM 5150   1 1
No Yes Desulfobacula toluolica Tol2   1 1
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   2 2
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   1 1
No Yes Desulfovibrio desulfuricans ND132   3 3
No Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Sulfolobus islandicus LAL14/1   1 1
No Yes Sulfolobus islandicus REY15A   1 1
No Yes Sulfolobus islandicus HVE10/4   1 1
No Yes Sulfolobus islandicus Y.G.57.14   1 1
No Yes Sulfolobus islandicus L.S.2.15   1 1
No Yes Sulfolobus islandicus M.16.27   1 1
No Yes Sulfolobus islandicus M.14.25   1 1
No Yes Sulfolobus islandicus M.16.4   1 1
No Yes Sulfolobus islandicus L.D.8.5   1 1
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes Sulfolobus acidocaldarius SUSAZ   1 1
No Yes Sulfolobus acidocaldarius Ron12/I   1 1
No Yes Sulfolobus acidocaldarius N8   1 1
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   2 2
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus sp. CL1   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus sp. NA2   1 1
No Yes Natronobacterium gregoryi SP2   1 1
No Yes Methanococcus maripaludis X1   2 2
No Yes Methanococcus maripaludis C6   1 1
No Yes Methanococcus maripaludis C7   1 1
No Yes Methanococcus maripaludis S2   2 2
No Yes Methanobacterium sp. SWAN-1   1 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   2 2
No Yes Bath Hot Springs, filamentous community (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   4 4
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   2 2
No Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   10 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   10 10
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   2992 2992
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   2 2
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   5 5
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   20 20
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   8 8
No Yes STRING v9.0.5 (STRING)   134 134
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   1901 1900
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   16 16
No Yes Global Ocean Sampling Expedition (GOS)   11 11
No Yes NCBI plasmid sequences (Plasmids)   6 6
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   6 6
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   16 16
No Yes TargetDB (Targets)   11 11

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