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YdgH-like superfamily domain assignments
in
Bacillus weihenstephanensis KBAB4


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Select to display   Genome       Domains   Proteins
No Yes ALL   298241 298241
No Yes Rhodnius prolixus 22   2 2
No Yes Thelohanellus kitauei   2 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Photorhabdus asymbiotica   4 2
No Yes Photorhabdus luminescens subsp. laumondii TTO1   4 2
No Yes Xenorhabdus bovienii SS-2004   4 2
No Yes Xenorhabdus nematophila ATCC 19061   4 2
No Yes Providencia stuartii MRSN 2154   6 4
No Yes Proteus mirabilis HI4320   4 2
No Yes Edwardsiella ictaluri 93-146   8 6
No Yes Edwardsiella tarda EIB202   8 6
No Yes Rahnella sp. Y9602   16 14
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   15 13
No Yes Yersinia pseudotuberculosis IP 31758   7 5
No Yes Yersinia pestis Pestoides F   7 5
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   11 9
No Yes Serratia sp. AS12   15 13
No Yes Serratia sp. ATCC 39006   6 4
No Yes Serratia plymuthica AS9   15 13
No Yes Serratia proteamaculans 568   14 12
No Yes Dickeya dadantii Ech703   10 8
No Yes Dickeya zeae Ech1591   10 8
No Yes Pectobacterium wasabiae WPP163   6 4
No Yes Pectobacterium sp. SCC3193   6 4
No Yes Pectobacterium atrosepticum SCRI1043   7 5
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   7 5
No Yes Sodalis glossinidius str. 'morsitans'   5 3
No Yes Pantoea sp. At-9b   29 27
No Yes Pantoea vagans C9-1   13 11
No Yes Pantoea ananatis LMG 20103   13 11
No Yes Erwinia tasmaniensis Et1/99   8 6
No Yes Erwinia sp. Ejp617   8 6
No Yes Erwinia billingiae Eb661   15 13
No Yes Erwinia pyrifoliae Ep1/96   8 6
No Yes Erwinia amylovora ATCC 49946   8 6
No Yes Escherichia blattae DSM 4481   11 9
No Yes Cronobacter turicensis z3032   11 9
No Yes Cronobacter sakazakii ES15   11 9
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   3 1
No Yes Enterobacteriaceae bacterium strain FGI 57   16 14
No Yes Shigella sonnei Ss046   11 9
No Yes Shigella flexneri 5 str. 8401   10 8
No Yes Shigella dysenteriae Sd197   9 7
No Yes Shigella boydii CDC 3083-94   9 7
No Yes Salmonella bongori NCTC 12419   14 12
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   13 11
No Yes Klebsiella oxytoca E718   15 13
No Yes Klebsiella variicola At-22   19 17
No Yes Klebsiella pneumoniae NTUH-K2044   19 17
No Yes Enterobacter aerogenes KCTC 2190   18 16
No Yes Escherichia fergusonii ATCC 35469   10 8
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   12 10
No Yes Enterobacter sp. R4-368   14 12
No Yes Enterobacter sp. 638   14 12
No Yes Enterobacter asburiae LF7a   17 15
No Yes Enterobacter cloacae subsp. dissolvens SDM   15 13
No Yes Citrobacter rodentium ICC168   11 9
No Yes Citrobacter koseri ATCC BAA-895   12 10
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Proteus mirabilis BB2000   4 2
No Yes Morganella morganii subsp. morganii KT   5 3
No Yes Edwardsiella tarda C07-087   8 6
No Yes Edwardsiella tarda FL6-60   8 6
No Yes Rahnella aquatilis HX2   16 14
No Yes Yersinia pseudotuberculosis PB1/+   7 5
No Yes Yersinia pseudotuberculosis YPIII   7 5
No Yes Yersinia pseudotuberculosis IP 32953   7 5
No Yes Yersinia pestis biovar Microtus str. 91001   7 5
No Yes Yersinia pestis A1122   7 5
No Yes Yersinia pestis Z176003   4 2
No Yes Yersinia pestis D182038   3 1
No Yes Yersinia pestis D106004   4 2
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   7 5
No Yes Yersinia pestis Nepal516   7 5
No Yes Yersinia pestis Antiqua   7 5
No Yes Yersinia pestis Angola   7 5
No Yes Yersinia pestis CO92   7 5
No Yes Yersinia pestis KIM10+   7 5
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   11 9
No Yes Yersinia enterocolitica subsp. palearctica Y11   11 9
No Yes Serratia sp. AS13   15 13
No Yes Serratia plymuthica S13   15 13
No Yes Serratia plymuthica 4Rx13   14 12
No Yes Serratia marcescens FGI94   11 9
No Yes Serratia marcescens WW4   16 14
No Yes Serratia liquefaciens ATCC 27592   18 16
No Yes Dickeya dadantii Ech586   12 10
No Yes Dickeya dadantii 3937   11 9
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   6 4
No Yes Pantoea ananatis LMG 5342   13 11
No Yes Pantoea ananatis PA13   13 11
No Yes Pantoea ananatis AJ13355   8 6
No Yes Erwinia pyrifoliae DSM 12163   8 6
No Yes Erwinia amylovora CFBP1430   7 5
No Yes Cronobacter sakazakii CMCC 45402   11 9
No Yes Cronobacter sakazakii SP291   11 9
No Yes Cronobacter sakazakii ATCC BAA-894   11 9
No Yes Raoultella ornithinolytica B6   17 15
No Yes Shigella sonnei 53G   11 9
No Yes Shigella flexneri 2002017   10 8
No Yes Shigella flexneri 2a str. 2457T   10 8
No Yes Shigella flexneri 2a str. 301   10 8
No Yes Shigella dysenteriae 1617   10 8
No Yes Shigella boydii Sb227   9 7
No Yes Salmonella bongori N268-08   14 12
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   13 11
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   13 11
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   13 11
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   13 11
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   13 11
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   13 11
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   13 11
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   13 11
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   13 11
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   12 10
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   13 11
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   13 11
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   13 11
No Yes Salmonella enterica serovar Bovismorbificans genomics   13 11
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   13 11
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   12 10
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   13 11
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   14 12
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   13 11
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   13 11
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   13 11
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   13 11
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   13 11
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   13 11
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   12 10
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   13 11
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   13 11
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   13 11
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   13 11
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   13 11
No Yes Klebsiella oxytoca KCTC 1686   15 13
No Yes Klebsiella pneumoniae JM45   16 14
No Yes Klebsiella pneumoniae CG43   17 15
No Yes Klebsiella pneumoniae KCTC 2242   19 17
No Yes Klebsiella pneumoniae 342   19 17
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   17 15
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   17 15
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   15 13
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   17 15
No Yes Enterobacter aerogenes EA1509E   18 16
No Yes Escherichia coli E24377A   12 10
No Yes Escherichia coli E. coli PMV-1   11 9
No Yes Escherichia coli JJ1886   13 11
No Yes Escherichia coli LY180   12 10
No Yes Escherichia coli APEC O78   12 10
No Yes Escherichia coli O7:K1 str. CE10   13 11
No Yes Escherichia coli O104:H4 str. 2009EL-2050   12 10
No Yes Escherichia coli O104:H4 str. 2009EL-2071   12 10
No Yes Escherichia coli O104:H4 str. 2011C-3493   12 10
No Yes Escherichia coli NA114   13 11
No Yes Escherichia coli P12b   6 4
No Yes Escherichia coli str. 'clone D i2'   13 11
No Yes Escherichia coli str. 'clone D i14'   13 11
No Yes Escherichia coli UM146   12 10
No Yes Escherichia coli 042   12 10
No Yes Escherichia coli Xuzhou21   13 11
No Yes Escherichia coli IHE3034   12 10
No Yes Escherichia coli UMNK88   12 10
No Yes Escherichia coli O83:H1 str. NRG 857C   12 10
No Yes Escherichia coli ABU 83972   12 10
No Yes Escherichia coli KO11FL   12 10
No Yes Escherichia coli KO11FL   12 10
No Yes Escherichia coli LF82   12 10
No Yes Escherichia coli ED1a   12 10
No Yes Escherichia coli IAI39   13 11
No Yes Escherichia coli UMN026   15 13
No Yes Escherichia coli 55989   12 10
No Yes Escherichia coli S88   12 10
No Yes Escherichia coli IAI1   12 10
No Yes Escherichia coli W   12 10
No Yes Escherichia coli W   12 10
No Yes Escherichia coli DH1   12 10
No Yes Escherichia coli DH1   12 10
No Yes Escherichia coli ATCC 8739   11 9
No Yes Escherichia coli BL21(DE3)   12 10
No Yes Escherichia coli BL21(DE3)   12 10
No Yes Escherichia coli SMS-3-5   13 11
No Yes Escherichia coli SE15   12 10
No Yes Escherichia coli SE11   12 10
No Yes Escherichia coli APEC O1   10 8
No Yes Escherichia coli O103:H2 str. 12009   12 10
No Yes Escherichia coli UTI89   12 10
No Yes Escherichia coli 536   13 11
No Yes Escherichia coli HS   11 9
No Yes Escherichia coli ETEC H10407   12 10
No Yes Escherichia coli O55:H7 str. RM12579   13 11
No Yes Escherichia coli O55:H7 str. CB9615   13 11
No Yes Escherichia coli O26:H11 str. 11368   12 10
No Yes Escherichia coli CFT073   13 11
No Yes Escherichia coli O111:H- str. 11128   12 10
No Yes Escherichia coli O127:H6 str. E2348/69   12 10
No Yes Escherichia coli O157:H7 str. TW14359   13 11
No Yes Escherichia coli O157:H7 str. EC4115   13 11
No Yes Escherichia coli O157:H7 str. Sakai   13 11
No Yes Escherichia coli O157:H7 str. EDL933   13 11
No Yes Escherichia coli str. K-12 substr. MDS42   11 9
No Yes Escherichia coli BW2952   10 8
No Yes Escherichia coli str. K-12 substr. MG1655   12 10
No Yes Escherichia coli str. K-12 substr. W3110   12 10
No Yes Escherichia coli str. K-12 substr. DH10B   11 9
No Yes Escherichia coli B str. REL606   12 10
No Yes Enterobacter cloacae SCF1   17 15
No Yes Enterobacter cloacae EcWSU1   13 11
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   14 12
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   10 8
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   14 12
No Yes 1_050719N (meta-genome)   10 9
No Yes 2_050719S (meta-genome)   4 3
No Yes 3_050719R (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   12 11
No Yes 5_050719P (meta-genome)   10 10
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   93 84
No Yes Combined (meta-genome)   133 126
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   140 132
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   32 30
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   41 37
No Yes Endophytic microbiome from Rice (meta-genome)   15 12
No Yes Fungus garden combined (combined) (meta-genome)   110 103
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   181 175
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   183 171
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   12 12
No Yes NCBI 2017_08 genome   281025 238056
No Yes STRING v9.0.5 (STRING)   943 767
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   11558 9555
No Yes Global Ocean Sampling Expedition (GOS)   15 12
No Yes NCBI plasmid sequences (Plasmids)   31 31
No Yes NCBI viral sequences (Viral)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   9 9
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   21 21
No Yes TargetDB (Targets)   92 74
No Yes The Salmonella enterica Pan-genome (meta-genome)   399 339

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