SUPERFAMILY 1.75 HMM library and genome assignments server

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YdhG-like superfamily domain assignments
in
all archaeal genomes

Assignment details

(show help)

7 selected genomes have 8 significant domains in 8 proteins.


Methanocella arvoryzae MRE50 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|147919989|ref|YP_686257.1|   4.71e-40   9-121   YdhG-like  
gi|147920732|ref|YP_685464.1|   0.00000301   13-129   YdhG-like  

Methanocella paludicola SANAE has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|282164407|ref|YP_003356792.1|   2.75e-37   7-119   YdhG-like  

Methanosphaerula palustris E1-9c has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|219851745|ref|YP_002466177.1|   3.01e-37   8-120   YdhG-like  

Complete genome sequence of Methanobacterium sp. Mb1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|566002573|ref|YP_008915413.1|   0.000000000222   28-123   YdhG-like  

Methanomethylovorans hollandica DSM 15978 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|435851715|ref|YP_007313301.1|   8.76e-32   17-128   YdhG-like  

Methanolobus psychrophilus R15 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|410672303|ref|YP_006924674.1|   0.000000000144   1-65   YdhG-like  

Halovivax ruber XH-70 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|433637303|ref|YP_007283063.1|   5.1e-24   5-115   YdhG-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   54701 54701
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Caenorhabditis japonica   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Trichomonas vaginalis   1 1
No Yes Acholeplasma laidlawii PG-8A   4 4
No Yes Thermobaculum terrenum ATCC BAA-798   1 1
No Yes Conexibacter woesei DSM 14684   2 2
No Yes Rubrobacter xylanophilus DSM 9941   1 1
No Yes Ilumatobacter coccineus   2 2
No Yes Acidothermus cellulolyticus 11B   1 1
No Yes Modestobacter marinus   4 4
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Kineococcus radiotolerans SRS30216   2 2
No Yes Stackebrandtia nassauensis DSM 44728   2 2
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Kribbella flavida DSM 17836   1 1
No Yes Nocardioides sp. JS614   1 1
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Salinispora arenicola CNS-205   1 1
No Yes Salinispora tropica CNB-440   1 1
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Gordonia sp. KTR9   2 2
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus jostii RHA1   2 2
No Yes Rhodococcus equi 103S   1 1
No Yes Rhodococcus opacus B4   1 1
No Yes Rhodococcus erythropolis PR4   2 2
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Mycobacterium intracellulare ATCC 13950   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Corynebacterium variabile DSM 44702   1 1
No Yes Corynebacterium glutamicum R   2 2
No Yes Corynebacterium diphtheriae NCTC 13129   1 1
No Yes Sanguibacter keddieii DSM 10542   3 3
No Yes Beutenbergia cavernae DSM 12333   4 4
No Yes Microbacterium testaceum StLB037   1 1
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   1 1
No Yes Intrasporangium calvum DSM 43043   2 2
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Cellulomonas flavigena DSM 20109   1 1
No Yes Cellulomonas fimi ATCC 484   2 2
No Yes [Cellvibrio] gilvus ATCC 13127   2 2
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter chlorophenolicus A6   1 1
No Yes Arthrobacter aurescens TC1   3 3
No Yes Arthrobacter arilaitensis Re117   1 1
No Yes Arthrobacter sp. Rue61a   3 3
No Yes Arthrobacter sp. FB24   3 3
No Yes Renibacterium salmoninarum ATCC 33209   1 1
No Yes Arcanobacterium haemolyticum DSM 20595   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   1 1
No Yes Dehalococcoides ethenogenes 195   1 1
No Yes Dehalococcoides sp. BAV1   1 1
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Sphaerobacter thermophilus DSM 20745   2 2
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Chloroflexus sp. Y-400-fl   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   1 1
No Yes Deinococcus geothermalis DSM 11300   2 2
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Thermus sp. CCB_US3_UF1   1 1
No Yes Thermus scotoductus SA-01   1 1
No Yes Erysipelothrix rhusiopathiae str. Fujisawa   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Thermaerobacter marianensis DSM 12885   2 2
No Yes Dehalobacter sp. DCA   1 1
No Yes Dehalobacter sp. CF   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   2 2
No Yes Desulfitobacterium dehalogenans ATCC 51507   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   1 1
No Yes Desulfotomaculum ruminis DSM 2154   1 1
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Eubacterium limosum KIST612   1 1
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Clostridium phytofermentans ISDg   5 5
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium cellulovorans 743B   1 1
No Yes Carnobacterium sp. 17-4   4 4
No Yes Carnobacterium sp. WN1359   1 1
No Yes Tetragenococcus halophilus NBRC 12172   1 1
No Yes Enterococcus sp. 7L76   1 1
No Yes Enterococcus faecium Aus0004   1 1
No Yes Enterococcus faecalis 62   2 2
No Yes Lactobacillus casei ATCC 334   1 1
No Yes Lactobacillus sanfranciscensis TMW 1.1304   1 1
No Yes Lactobacillus sakei subsp. sakei 23K   1 1
No Yes Lactobacillus plantarum JDM1   4 4
No Yes Lactobacillus buchneri NRRL B-30929   1 1
No Yes Lactobacillus buchneri   1 1
No Yes Lactobacillus brevis ATCC 367   2 2
No Yes Lactococcus lactis subsp. cremoris MG1363   1 1
No Yes Streptococcus uberis 0140J   2 2
No Yes Streptococcus parauberis KCTC 11537   1 1
No Yes Streptococcus suis P1/7   1 1
No Yes Exiguobacterium sp. MH3   1 1
No Yes Exiguobacterium sibiricum 255-15   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446   1 1
No Yes Brevibacillus brevis NBRC 100599   2 2
No Yes Paenibacillus sp. JDR-2   4 4
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Paenibacillus mucilaginosus 3016   2 2
No Yes Paenibacillus polymyxa M1   2 2
No Yes Bacillus selenitireducens MLS10   1 1
No Yes Listeria welshimeri serovar 6b str. SLCC5334   3 3
No Yes Listeria innocua Clip11262   3 3
No Yes Listeria seeligeri serovar 1/2b str. SLCC3954   3 3
No Yes Listeria monocytogenes serotype 4b str. CLIP 80459   3 3
No Yes Listeria ivanovii subsp. ivanovii PAM 55   3 3
No Yes Solibacillus silvestris StLB046   1 1
No Yes Lysinibacillus sphaericus C3-41   1 1
No Yes Oceanobacillus iheyensis HTE831   1 1
No Yes Anoxybacillus flavithermus WK1   1 1
No Yes Geobacillus thermodenitrificans NG80-2   1 1
No Yes Halobacillus halophilus DSM 2266   1 1
No Yes Bacillus sp. JS   2 2
No Yes Bacillus sp. 1NLA3E   3 3
No Yes Bacillus amyloliquefaciens FZB42   2 2
No Yes Bacillus subtilis subsp. subtilis str. 168   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus halodurans C-125   2 2
No Yes Bacillus pseudofirmus OF4   1 1
No Yes Bacillus clausii KSM-K16   3 3
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Bacillus pumilus SAFR-032   1 1
No Yes Bacillus megaterium DSM 319   2 2
No Yes Staphylococcus pseudintermedius HKU10-03   1 1
No Yes Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305   2 2
No Yes Staphylococcus lugdunensis HKU09-01   1 1
No Yes Staphylococcus haemolyticus JCSC1435   1 1
No Yes Staphylococcus epidermidis RP62A   1 1
No Yes Staphylococcus carnosus subsp. carnosus TM300   3 3
No Yes Staphylococcus aureus subsp. aureus JH1   1 1
No Yes Staphylococcus aureus   1 1
No Yes Gemmatimonas aurantiaca T-27   4 4
No Yes Melioribacter roseus P3M   1 1
No Yes Pelodictyon phaeoclathratiforme BU-1   1 1
No Yes Chlorobium phaeobacteroides DSM 266   1 1
No Yes Chlorobium limicola DSM 245   1 1
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   6 6
No Yes Saprospira grandis str. Lewin   1 1
No Yes Niastella koreensis GR20-10   2 2
No Yes Chitinophaga pinensis DSM 2588   4 4
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Candidatus Amoebophilus asiaticus 5a2   1 1
No Yes Belliella baltica DSM 15883   2 2
No Yes Cyclobacterium marinum DSM 745   4 4
No Yes Marivirga tractuosa DSM 4126   4 4
No Yes Fibrella aestuarina   3 3
No Yes Leadbetterella byssophila DSM 17132   6 5
No Yes Dyadobacter fermentans DSM 18053   3 3
No Yes Cytophaga hutchinsonii ATCC 33406   6 6
No Yes Spirosoma linguale DSM 74   2 2
No Yes Runella slithyformis DSM 19594   3 3
No Yes Paludibacter propionicigenes WB4   1 1
No Yes Pedobacter saltans DSM 12145   4 4
No Yes Solitalea canadensis DSM 3403   5 5
No Yes Pedobacter heparinus DSM 2366   7 7
No Yes Sphingobacterium sp. 21   4 4
No Yes Fluviicola taffensis DSM 16823   6 6
No Yes Owenweeksia hongkongensis DSM 17368   8 8
No Yes Zunongwangia profunda SM-A87   1 1
No Yes Krokinobacter sp. 4H-3-7-5   1 1
No Yes Gramella forsetii KT0803   3 3
No Yes Lacinutrix sp. 5H-3-7-4   3 3
No Yes Maribacter sp. HTCC2170   3 3
No Yes Robiginitalea biformata HTCC2501   4 4
No Yes Croceibacter atlanticus HTCC2559   4 4
No Yes Aequorivita sublithincola DSM 14238   4 4
No Yes Zobellia galactanivorans   4 4
No Yes Muricauda ruestringensis DSM 13258   6 6
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Cellulophaga lytica DSM 7489   3 3
No Yes Flavobacteriaceae bacterium 3519-10   2 2
No Yes Polaribacter sp. MED152   3 3
No Yes Flavobacterium indicum GPTSA100-9   4 4
No Yes Flavobacterium branchiophilum FL-15   2 2
No Yes Flavobacterium johnsoniae UW101   4 4
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Rhodopirellula baltica SH 1   2 2
No Yes Pirellula staleyi DSM 6068   2 1
No Yes Coraliomargarita akajimensis DSM 45221   1 1
No Yes Opitutus terrae PB90-1   1 1
No Yes Turneriella parva DSM 21527   2 2
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   1 1
No Yes Leptospira interrogans serovar Lai str. IPAV   2 2
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   7 7
No Yes Sphaerochaeta pleomorpha str. Grapes   2 2
No Yes Sphaerochaeta globus str. Buddy   3 3
No Yes Sphaerochaeta coccoides DSM 17374   1 1
No Yes Spirochaeta africana DSM 8902   1 1
No Yes Spirochaeta thermophila DSM 6192   1 1
No Yes Desulfurispirillum indicum S5   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   5 5
No Yes Granulicella tundricola MP5ACTX9   2 2
No Yes Granulicella mallensis MP5ACTX8   2 2
No Yes Candidatus Koribacter versatilis Ellin345   5 5
No Yes Terriglobus saanensis SP1PR4   2 2
No Yes Terriglobus roseus DSM 18391   2 2
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Candidatus Saccharimonas aalborgensis   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Anaeromyxobacter sp. Fw109-5   2 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   2 2
No Yes Stigmatella aurantiaca DW4/3-1   2 2
No Yes Corallococcus coralloides DSM 2259   3 3
No Yes Myxococcus xanthus DK 1622   3 3
No Yes Myxococcus fulvus HW-1   3 3
No Yes Azoarcus sp. KH32C   1 1
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   2 2
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   2 2
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   2 2
No Yes Ralstonia eutropha H16   2 2
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   2 2
No Yes Polaromonas sp. JS666   2 2
No Yes Variovorax paradoxus S110   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Comamonas testosteroni CNB-2   1 1
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Collimonas fungivorans Ter331   1 1
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Advenella kashmirensis WT001   2 2
No Yes Bordetella petrii DSM 12804   1 1
No Yes Bordetella pertussis Tohama I   1 1
No Yes Bordetella parapertussis 12822   1 1
No Yes Bordetella bronchiseptica RB50   1 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Caulobacter sp. K31   3 3
No Yes Caulobacter crescentus NA1000   3 3
No Yes Caulobacter segnis ATCC 21756   4 4
No Yes Phenylobacterium zucineum HLK1   2 2
No Yes Sphingopyxis alaskensis RB2256   2 2
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Sphingobium japonicum UT26S   1 1
No Yes Sphingobium chlorophenolicum L-1   1 1
No Yes Sphingomonas sp. MM-1   3 3
No Yes Sphingomonas wittichii RW1   2 2
No Yes Maricaulis maris MCS10   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Hyphomonas neptunium ATCC 15444   3 3
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Pseudovibrio sp. FO-BEG1   1 1
No Yes Jannaschia sp. CCS1   2 2
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Roseobacter litoralis Och 149   1 1
No Yes Paracoccus denitrificans PD1222   3 3
No Yes Starkeya novella DSM 506   2 2
No Yes Azorhizobium caulinodans ORS 571   1 1
No Yes Methylobacterium nodulans ORS 2060   3 3
No Yes Ochrobactrum anthropi ATCC 49188   2 2
No Yes Sinorhizobium fredii NGR234   2 2
No Yes Sinorhizobium medicae WSM419   2 2
No Yes Sinorhizobium meliloti AK83   2 2
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   2 2
No Yes Rhizobium leguminosarum bv. viciae 3841   2 2
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Mesorhizobium sp. BNC1   2 2
No Yes Mesorhizobium opportunistum WSM2075   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   2 2
No Yes Mesorhizobium loti MAFF303099   2 2
No Yes Methylocella silvestris BL2   1 1
No Yes Pelagibacterium halotolerans B2   5 5
No Yes Hyphomicrobium denitrificans ATCC 51888   1 1
No Yes Bradyrhizobium japonicum USDA 110   2 2
No Yes Methylocystis sp. SC2   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   2 2
No Yes Photobacterium profundum SS9   1 1
No Yes Psychromonas sp. CNPT3   1 1
No Yes Idiomarina loihiensis L2TR   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella baltica OS185   2 2
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Shewanella putrefaciens CN-32   1 1
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Pseudoalteromonas haloplanktis TAC125   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Hahella chejuensis KCTC 2396   2 2
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Marinomonas sp. MWYL1   1 1
No Yes Marinomonas mediterranea MMB-1   2 2
No Yes Rhodanobacter denitrificans   2 2
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Stenotrophomonas maltophilia K279a   2 2
No Yes Coxiella burnetii Dugway 5J108-111   1 1
No Yes Serratia sp. AS12   1 1
No Yes Serratia plymuthica AS9   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Methanocella arvoryzae MRE50   2 2
No Yes Methanocella paludicola SANAE   1 1
No Yes Methanosphaerula palustris E1-9c   1 1
No Yes Complete genome sequence of Methanobacterium sp. Mb1   1 1
No Yes Streptomyces davawensis JCM 4913   2 2
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Saccharothrix espanaensis DSM 44229   3 3
No Yes Amycolatopsis orientalis HCCB10007   2 2
No Yes Propionibacterium avidum 44067   1 1
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Rhodococcus erythropolis CCM2595   2 2
No Yes Nocardia brasiliensis ATCC 700358   2 2
No Yes Mycobacterium sp. MOTT36Y   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium yongonense 05-1390   1 1
No Yes Mycobacterium intracellulare MOTT-64   1 1
No Yes Mycobacterium indicus pranii MTCC 9506   1 1
No Yes Mycobacterium intracellulare MOTT-02   1 1
No Yes Corynebacterium halotolerans YIM 70093 = DSM 44683   2 2
No Yes Corynebacterium callunae DSM 20147   2 2
No Yes Corynebacterium glutamicum MB001   1 1
No Yes Corynebacterium glutamicum SCgG2   2 2
No Yes Corynebacterium glutamicum SCgG1   2 2
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium diphtheriae BH8   1 1
No Yes Corynebacterium diphtheriae INCA 402   1 1
No Yes Corynebacterium diphtheriae VA01   1 1
No Yes Corynebacterium diphtheriae HC04   1 1
No Yes Corynebacterium diphtheriae HC03   1 1
No Yes Corynebacterium diphtheriae HC02   1 1
No Yes Corynebacterium diphtheriae HC01   1 1
No Yes Corynebacterium diphtheriae 241   1 1
No Yes Corynebacterium diphtheriae CDCE 8392   1 1
No Yes Corynebacterium diphtheriae PW8   1 1
No Yes Corynebacterium diphtheriae C7 (beta)   1 1
No Yes Corynebacterium diphtheriae 31A   1 1
No Yes Clavibacter michiganensis subsp. sepedonicus   1 1
No Yes Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   1 1
No Yes Bifidobacterium thermophilum RBL67   1 1
No Yes Actinomyces odontolyticus ATCC 17982   1 1
No Yes Dehalococcoides mccartyi GY50   1 1
No Yes Dehalococcoides mccartyi DCMB5   1 1
No Yes Dehalococcoides mccartyi BTF08   1 1
No Yes Dehalococcoides sp. GT   1 1
No Yes Dehalococcoides sp. VS   1 1
No Yes Dehalococcoides sp. CBDB1   1 1
No Yes Thermus oshimai JL-2   1 1
No Yes Erysipelothrix rhusiopathiae SY1027   1 1
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Desulfosporosinus meridiei DSM 13257   2 2
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   2 2
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Clostridium pasteurianum BC1   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Carnobacterium maltaromaticum LMA28   4 4
No Yes Enterococcus casseliflavus EC20   2 2
No Yes Enterococcus faecium Aus0085   1 1
No Yes Enterococcus faecium NRRL B-2354   1 1
No Yes Enterococcus faecium DO   1 1
No Yes Enterococcus faecalis str. Symbioflor 1   2 2
No Yes Enterococcus faecalis D32   2 2
No Yes Enterococcus faecalis OG1RF   2 2
No Yes Enterococcus faecalis V583   2 2
No Yes Leuconostoc gelidum JB7   1 1
No Yes Lactobacillus paracasei subsp. paracasei 8700:2   1 1
No Yes Lactobacillus casei LOCK919   1 1
No Yes Lactobacillus casei W56   1 1
No Yes Lactobacillus casei LC2W   1 1
No Yes Lactobacillus casei BD-II   1 1
No Yes Lactobacillus casei BL23   1 1
No Yes Lactobacillus casei str. Zhang   1 1
No Yes Lactobacillus plantarum 16   3 3
No Yes Lactobacillus plantarum ZJ316   3 3
No Yes Lactobacillus plantarum subsp. plantarum ST-III   3 3
No Yes Lactobacillus plantarum subsp. plantarum P-8   3 3
No Yes Lactobacillus plantarum WCFS1   3 3
No Yes Lactobacillus brevis KB290   2 2
No Yes Lactococcus lactis subsp. lactis KLDS 4.0325   1 1
No Yes Lactococcus lactis subsp. lactis IO-1   1 1
No Yes Lactococcus lactis subsp. lactis CV56   1 1
No Yes Lactococcus lactis subsp. lactis KF147   1 1
No Yes Lactococcus lactis subsp. lactis Il1403   1 1
No Yes Lactococcus lactis subsp. cremoris KW2   1 1
No Yes Lactococcus lactis subsp. cremoris UC509.9   1 1
No Yes Lactococcus lactis subsp. cremoris A76   1 1
No Yes Lactococcus lactis subsp. cremoris NZ9000   1 1
No Yes Lactococcus lactis subsp. cremoris SK11   1 1
No Yes Streptococcus suis T15   1 1
No Yes Streptococcus suis TL13   1 1
No Yes Streptococcus suis SC070731   1 1
No Yes Streptococcus suis S735   1 1
No Yes Streptococcus suis ST3   1 1
No Yes Streptococcus suis D9   1 1
No Yes Streptococcus suis SS12   1 1
No Yes Streptococcus suis D12   1 1
No Yes Streptococcus suis ST1   1 1
No Yes Streptococcus suis A7   1 1
No Yes Streptococcus suis JS14   1 1
No Yes Streptococcus suis BM407   1 1
No Yes Streptococcus suis SC84   1 1
No Yes Streptococcus suis GZ1   1 1
No Yes Streptococcus suis 98HAH33   1 1
No Yes Streptococcus suis 05ZYH33   1 1
No Yes Exiguobacterium antarcticum B7   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   1 1
No Yes Paenibacillus sp. Y412MC10   7 7
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Paenibacillus polymyxa SC2   2 2
No Yes Paenibacillus polymyxa E681   1 1
No Yes Listeria monocytogenes EGD sequence   3 3
No Yes Listeria monocytogenes N53-1   1 1
No Yes Listeria monocytogenes La111   1 1
No Yes Listeria monocytogenes serotype 4b str. LL195   3 3
No Yes Listeria monocytogenes 07PF0776   3 3
No Yes Listeria monocytogenes M7   3 3
No Yes Listeria monocytogenes J1-220   3 3
No Yes Listeria monocytogenes J1816   3 3
No Yes Listeria monocytogenes SLCC2376   3 3
No Yes Listeria monocytogenes SLCC5850   3 3
No Yes Listeria monocytogenes ATCC 19117   3 3
No Yes Listeria monocytogenes L312   3 3
No Yes Listeria monocytogenes SLCC2479   3 3
No Yes Listeria monocytogenes SLCC7179   3 3
No Yes Listeria monocytogenes SLCC2540   3 3
No Yes Listeria monocytogenes SLCC2378   3 3
No Yes Listeria monocytogenes serotype 1/2b str. SLCC2755   3 3
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   3 3
No Yes Listeria monocytogenes serotype 7 str. SLCC2482   3 3
No Yes Listeria monocytogenes 08-5578   3 3
No Yes Listeria monocytogenes 08-5923   3 3
No Yes Listeria monocytogenes L99   3 3
No Yes Listeria monocytogenes HCC23   3 3
No Yes Listeria monocytogenes 10403S   3 3
No Yes Listeria monocytogenes J0161   3 3
No Yes Listeria monocytogenes Finland 1998   3 3
No Yes Listeria monocytogenes FSL R2-561   3 3
No Yes Listeria monocytogenes serotype 4b str. F2365   3 3
No Yes Listeria monocytogenes EGD-e   3 3
No Yes Amphibacillus xylanus NBRC 15112   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum sequencing   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5033   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5113   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946   2 2
No Yes Bacillus amyloliquefaciens LFB112   2 2
No Yes Bacillus amyloliquefaciens CC178   2 2
No Yes Bacillus amyloliquefaciens Y2   1 1
No Yes Bacillus amyloliquefaciens IT-45   2 2
No Yes Bacillus amyloliquefaciens XH7   1 1
No Yes Bacillus amyloliquefaciens LL3   1 1
No Yes Bacillus amyloliquefaciens TA208   1 1
No Yes Bacillus amyloliquefaciens DSM 7   1 1
No Yes Bacillus licheniformis 9945A   2 2
No Yes Bacillus subtilis PY79   2 2
No Yes Bacillus subtilis XF-1   1 1
No Yes Bacillus subtilis QB928   2 2
No Yes Bacillus subtilis BSn5   2 2
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   2 2
No Yes Bacillus subtilis subsp. subtilis str. BSP1   2 2
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   2 2
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   2 2
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   1 1
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Bacillus subtilis subsp. natto BEST195   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus infantis NRRL B-14911   2 2
No Yes Bacillus megaterium WSH-002   2 2
No Yes Bacillus megaterium QM B1551   2 2
No Yes Staphylococcus aureus subsp. aureus MSHR1132   1 1
No Yes Staphylococcus pseudintermedius ED99   1 1
No Yes Staphylococcus pasteuri SP1   1 1
No Yes Staphylococcus lugdunensis N920143   1 1
No Yes Staphylococcus warneri SG1   1 1
No Yes Staphylococcus epidermidis ATCC 12228   1 1
No Yes Staphylococcus aureus CA-347   1 1
No Yes Staphylococcus aureus Bmb9393   1 1
No Yes Staphylococcus aureus M1   1 1
No Yes Staphylococcus aureus 08BA02176   1 1
No Yes Staphylococcus aureus ST228/18412   1 1
No Yes Staphylococcus aureus ST228/18341   1 1
No Yes Staphylococcus aureus ST228/16125   1 1
No Yes Staphylococcus aureus ST228/16035   1 1
No Yes Staphylococcus aureus ST228/15532   1 1
No Yes Staphylococcus aureus ST228/10497   1 1
No Yes Staphylococcus aureus ST228/10388   1 1
No Yes Staphylococcus aureus 04-02981   1 1
No Yes Staphylococcus aureus subsp. aureus Z172   1 1
No Yes Staphylococcus aureus subsp. aureus 6850   1 1
No Yes Staphylococcus aureus subsp. aureus SA957   1 1
No Yes Staphylococcus aureus subsp. aureus CN1   1 1
No Yes Staphylococcus aureus subsp. aureus SA40   1 1
No Yes Staphylococcus aureus subsp. aureus 11819-97   1 1
No Yes Staphylococcus aureus subsp. aureus M013   1 1
No Yes Staphylococcus aureus subsp. aureus HO 5096 0412   1 1
No Yes Staphylococcus aureus subsp. aureus VC40   1 1
No Yes Staphylococcus aureus subsp. aureus T0131   1 1
No Yes Staphylococcus aureus subsp. aureus LGA251   1 1
No Yes Staphylococcus aureus subsp. aureus ECT-R 2   1 1
No Yes Staphylococcus aureus subsp. aureus JKD6159   1 1
No Yes Staphylococcus aureus subsp. aureus ED133   1 1
No Yes Staphylococcus aureus subsp. aureus ED98   1 1
No Yes Staphylococcus aureus subsp. aureus TW20   1 1
No Yes Staphylococcus aureus subsp. aureus 55/2053   1 1
No Yes Staphylococcus aureus subsp. aureus TCH60   1 1
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   1 1
No Yes Staphylococcus aureus subsp. aureus 71193   1 1
No Yes Staphylococcus aureus subsp. aureus S0385   1 1
No Yes Staphylococcus aureus subsp. aureus str. Newman   1 1
No Yes Staphylococcus aureus subsp. aureus Mu3   1 1
No Yes Staphylococcus aureus subsp. aureus USA300_TCH1516   1 1
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   1 1
No Yes Staphylococcus aureus subsp. aureus JH9   1 1
No Yes Staphylococcus aureus subsp. aureus MSSA476   1 1
No Yes Staphylococcus aureus subsp. aureus MRSA252   1 1
No Yes Staphylococcus aureus subsp. aureus MW2   1 1
No Yes Staphylococcus aureus subsp. aureus N315   1 1
No Yes Staphylococcus aureus subsp. aureus Mu50   1 1
No Yes Staphylococcus aureus subsp. aureus COL   1 1
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   1 1
No Yes Chlorobium phaeobacteroides BS1   1 1
No Yes Echinicola vietnamensis DSM 17526   6 6
No Yes Emticicia oligotrophica DSM 17448   4 4
No Yes Nonlabens dokdonensis DSW-6   4 4
No Yes Singulisphaera acidiphila DSM 18658   3 2
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   1 1
No Yes Leptospira interrogans serovar Lai str. 56601   2 2
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   2 2
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   7 7
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Sorangium cellulosum So0157-2   2 2
No Yes Anaeromyxobacter sp. K   2 2
No Yes Anaeromyxobacter dehalogenans 2CP-C   2 2
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia cepacia GG4   1 1
No Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Bordetella pertussis CS   1 1
No Yes Bordetella parapertussis 18323   1 1
No Yes Bordetella bronchiseptica MO149   1 1
No Yes Bordetella bronchiseptica 253   1 1
No Yes Caulobacter crescentus CB15   2 2
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Octadecabacter antarcticus 307   1 1
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Sinorhizobium fredii USDA 257   2 2
No Yes Sinorhizobium fredii HH103   2 2
No Yes Sinorhizobium meliloti 2011   2 2
No Yes Sinorhizobium meliloti GR4   2 2
No Yes Sinorhizobium meliloti Rm41   2 2
No Yes Sinorhizobium meliloti SM11   2 2
No Yes Sinorhizobium meliloti BL225C   2 2
No Yes Sinorhizobium meliloti 1021   2 2
No Yes Rhizobium etli CFN 42   2 2
No Yes Rhizobium etli bv. mimosae str. Mim1   2 2
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   2 2
No Yes Mesorhizobium australicum WSM2073   2 2
No Yes Hyphomicrobium denitrificans 1NES1   1 1
No Yes Bradyrhizobium sp. S23321   2 2
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   2 2
No Yes Simiduia agarivorans SA1 = DSM 21679   3 3
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio nigripulchritudo VibrioScope   2 2
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Idiomarina loihiensis GSL 199   1 1
No Yes Shewanella sp. W3-18-1   1 1
No Yes Shewanella baltica BA175   2 2
No Yes Shewanella baltica OS678   2 2
No Yes Shewanella baltica OS117   2 2
No Yes Shewanella baltica OS223   2 2
No Yes Shewanella baltica OS195   2 2
No Yes Shewanella baltica OS155   2 2
No Yes Shewanella putrefaciens 200   1 1
No Yes Thalassolituus oleivorans MIL-1   1 1
No Yes Stenotrophomonas maltophilia D457   2 2
No Yes Stenotrophomonas maltophilia JV3   2 2
No Yes Stenotrophomonas maltophilia R551-3   2 2
No Yes Serratia sp. AS13   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Halovivax ruber XH-70   1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Acholeplasma laidlawii PG-8A (duplicate)   4 4
No Yes Felis catus 69 Domestic cat 1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   1 1
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   6 6
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   4 4
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Combined (meta-genome)   24 23
No Yes Crater Hills (meta-genome)   2 2
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   7 7
No Yes Dump bottom (Dump bottom) (meta-genome)   27 27
No Yes Dump top (Dump top) (meta-genome)   30 30
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   5 5
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   9 9
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   11 11
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   7 7
No Yes Fungus garden combined (combined) (meta-genome)   6 6
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   5 5
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   7 7
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   8 8
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   5 5
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   11 11
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   14 14
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   6 6
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   38 37
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   15 15
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   11 11
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   25 25
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   13 13
No Yes NCBI 2017_08 genome   38270 38243
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   26 26
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   2 2
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   2 2
No Yes Protozoadb 2010_08 (Protozoadb)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   8 8
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   6 6
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   6 6
No Yes Sludge/US, Jazz Assembly (meta-genome)   5 5
No Yes Sludge/US, Phrap Assembly (meta-genome)   6 6
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   55 55
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   54 54
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   48 48
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   34 34
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   30 30
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   37 37
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   46 46
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   13 13
No Yes STRING v9.0.5 (STRING)   394 393
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   8 8
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   40 40
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   12 12
No Yes Uniprot 2018_03 genome   13300 13277
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   209 209
No Yes NCBI plasmid sequences (Plasmids)   30 30
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   5 5
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   12 12
No Yes TargetDB (Targets)   42 42

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